Ggra6834.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6834.t1
Unique NameGgra6834.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:635675..636616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6834Ggra6834Gracilaria gracilis GNS1m malegenetig00000056_pilon 635675..636616 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6834.t1.stop1Ggra6834.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 635675..635677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6834.t1.CDS1Ggra6834.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 635675..636616 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6834.t1.exon1Ggra6834.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 635675..636616 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6834.t1.start1Ggra6834.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 636614..636616 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6834.t1Ggra6834.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 635675..636616 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6834.t1 ID=Ggra6834.t1|Name=Ggra6834.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MSHTIREHAMVKDNGTIPTTLLFCPLVLLDGDDDGEQEIRINERDAGRAS
DLFVYEGRLTTLPGEQDPVRPPSLSSKSAKNFFCPVCDHRVKVTAERIYC
TSCDWNATEAGIHSVSQLLQSEADQYPLLSKRFQQLVKIVRGEQSAQDSK
HSTDSASIGNEALFGDVRLQDLTERRMQKGMLLKRKEPARRRLATSGVEI
LQGNAESAETVLPKLQVDLCGDEAVVQLQNARVEDVTVLVCAAGEDDGQA
LTLGGDVFGEARVHIPDEAISHERDGGVVELDLWFCFESGEYASHQFGVR
VFARFEKFGGVKL*
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spliced messenger RNA

>Ggra6834.t1 ID=Ggra6834.t1|Name=Ggra6834.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000056_pilon:635675..636616- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCACACGATTCGTGAACATGCGATGGTCAAAGACAATGGCACTAT
CCCCACTACGCTGCTGTTCTGCCCCCTCGTTCTTCTCGACGGAGACGACG
ACGGTGAACAGGAGATCAGAATCAACGAAAGGGACGCCGGAAGGGCATCA
GATTTATTTGTCTACGAAGGGCGCCTAACTACTCTTCCCGGAGAACAAGA
CCCCGTCCGTCCACCCTCTCTTTCCTCCAAATCAGCAAAGAACTTCTTCT
GTCCCGTGTGCGACCATCGCGTGAAAGTTACAGCCGAGCGCATATATTGC
ACTTCGTGTGATTGGAACGCAACTGAAGCAGGTATCCACTCTGTGTCACA
ACTCTTGCAAAGCGAGGCAGATCAATACCCGTTGTTGTCCAAACGGTTCC
AACAACTGGTGAAAATCGTGCGCGGGGAGCAGTCAGCGCAGGATTCGAAA
CACAGCACCGATTCAGCATCGATAGGCAATGAAGCATTATTCGGGGATGT
GCGATTGCAAGACCTCACAGAACGGCGTATGCAGAAAGGCATGTTGCTCA
AAAGGAAAGAGCCAGCTCGCCGTCGCCTTGCGACCTCGGGTGTCGAAATC
CTGCAGGGAAATGCGGAGAGTGCCGAAACGGTTCTGCCCAAGCTGCAAGT
AGATTTGTGTGGTGATGAAGCGGTGGTACAGTTACAAAACGCCAGAGTGG
AAGATGTTACGGTGCTGGTGTGCGCAGCCGGCGAGGACGATGGACAGGCG
CTGACACTCGGTGGAGATGTATTTGGTGAGGCACGAGTGCATATTCCAGA
TGAAGCGATAAGTCATGAACGAGATGGGGGTGTGGTTGAACTTGACCTCT
GGTTCTGTTTTGAGAGTGGTGAGTACGCCAGTCATCAGTTTGGAGTGAGG
GTGTTTGCAAGGTTTGAGAAATTTGGAGGGGTGAAGTTGTAG
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protein sequence of Ggra6834.t1

>Ggra6834.t1 ID=Ggra6834.t1|Name=Ggra6834.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MSHTIREHAMVKDNGTIPTTLLFCPLVLLDGDDDGEQEIRINERDAGRAS
DLFVYEGRLTTLPGEQDPVRPPSLSSKSAKNFFCPVCDHRVKVTAERIYC
TSCDWNATEAGIHSVSQLLQSEADQYPLLSKRFQQLVKIVRGEQSAQDSK
HSTDSASIGNEALFGDVRLQDLTERRMQKGMLLKRKEPARRRLATSGVEI
LQGNAESAETVLPKLQVDLCGDEAVVQLQNARVEDVTVLVCAAGEDDGQA
LTLGGDVFGEARVHIPDEAISHERDGGVVELDLWFCFESGEYASHQFGVR
VFARFEKFGGVKL*
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mRNA from alignment at tig00000056_pilon:635675..636616-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6834.t1 ID=Ggra6834.t1|Name=Ggra6834.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000056_pilon:635675..636616- (Gracilaria gracilis GNS1m male)
ATGTCGCACACGATTCGTGAACATGCGATGGTCAAAGACAATGGCACTAT
CCCCACTACGCTGCTGTTCTGCCCCCTCGTTCTTCTCGACGGAGACGACG
ACGGTGAACAGGAGATCAGAATCAACGAAAGGGACGCCGGAAGGGCATCA
GATTTATTTGTCTACGAAGGGCGCCTAACTACTCTTCCCGGAGAACAAGA
CCCCGTCCGTCCACCCTCTCTTTCCTCCAAATCAGCAAAGAACTTCTTCT
GTCCCGTGTGCGACCATCGCGTGAAAGTTACAGCCGAGCGCATATATTGC
ACTTCGTGTGATTGGAACGCAACTGAAGCAGGTATCCACTCTGTGTCACA
ACTCTTGCAAAGCGAGGCAGATCAATACCCGTTGTTGTCCAAACGGTTCC
AACAACTGGTGAAAATCGTGCGCGGGGAGCAGTCAGCGCAGGATTCGAAA
CACAGCACCGATTCAGCATCGATAGGCAATGAAGCATTATTCGGGGATGT
GCGATTGCAAGACCTCACAGAACGGCGTATGCAGAAAGGCATGTTGCTCA
AAAGGAAAGAGCCAGCTCGCCGTCGCCTTGCGACCTCGGGTGTCGAAATC
CTGCAGGGAAATGCGGAGAGTGCCGAAACGGTTCTGCCCAAGCTGCAAGT
AGATTTGTGTGGTGATGAAGCGGTGGTACAGTTACAAAACGCCAGAGTGG
AAGATGTTACGGTGCTGGTGTGCGCAGCCGGCGAGGACGATGGACAGGCG
CTGACACTCGGTGGAGATGTATTTGGTGAGGCACGAGTGCATATTCCAGA
TGAAGCGATAAGTCATGAACGAGATGGGGGTGTGGTTGAACTTGACCTCT
GGTTCTGTTTTGAGAGTGGTGAGTACGCCAGTCATCAGTTTGGAGTGAGG
GTGTTTGCAAGGTTTGAGAAATTTGGAGGGGTGAAGTTGTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:635675..636616-

>Ggra6834.t1 ID=Ggra6834.t1|Name=Ggra6834.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000056_pilon:635675..636616- (Gracilaria gracilis GNS1m male)
ATGTCGCACACGATTCGTGAACATGCGATGGTCAAAGACAATGGCACTAT
CCCCACTACGCTGCTGTTCTGCCCCCTCGTTCTTCTCGACGGAGACGACG
ACGGTGAACAGGAGATCAGAATCAACGAAAGGGACGCCGGAAGGGCATCA
GATTTATTTGTCTACGAAGGGCGCCTAACTACTCTTCCCGGAGAACAAGA
CCCCGTCCGTCCACCCTCTCTTTCCTCCAAATCAGCAAAGAACTTCTTCT
GTCCCGTGTGCGACCATCGCGTGAAAGTTACAGCCGAGCGCATATATTGC
ACTTCGTGTGATTGGAACGCAACTGAAGCAGGTATCCACTCTGTGTCACA
ACTCTTGCAAAGCGAGGCAGATCAATACCCGTTGTTGTCCAAACGGTTCC
AACAACTGGTGAAAATCGTGCGCGGGGAGCAGTCAGCGCAGGATTCGAAA
CACAGCACCGATTCAGCATCGATAGGCAATGAAGCATTATTCGGGGATGT
GCGATTGCAAGACCTCACAGAACGGCGTATGCAGAAAGGCATGTTGCTCA
AAAGGAAAGAGCCAGCTCGCCGTCGCCTTGCGACCTCGGGTGTCGAAATC
CTGCAGGGAAATGCGGAGAGTGCCGAAACGGTTCTGCCCAAGCTGCAAGT
AGATTTGTGTGGTGATGAAGCGGTGGTACAGTTACAAAACGCCAGAGTGG
AAGATGTTACGGTGCTGGTGTGCGCAGCCGGCGAGGACGATGGACAGGCG
CTGACACTCGGTGGAGATGTATTTGGTGAGGCACGAGTGCATATTCCAGA
TGAAGCGATAAGTCATGAACGAGATGGGGGTGTGGTTGAACTTGACCTCT
GGTTCTGTTTTGAGAGTGGTGAGTACGCCAGTCATCAGTTTGGAGTGAGG
GTGTTTGCAAGGTTTGAGAAATTTGGAGGGGTGAAGTTGTAG
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