Ggra6832.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6832.t1
Unique NameGgra6832.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length69
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:632842..633288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6832Ggra6832Gracilaria gracilis GNS1m malegenetig00000056_pilon 632842..633288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6832.t1Ggra6832.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 632842..633288 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6832.t1.stop1Ggra6832.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 632842..632844 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6832.t1.CDS1Ggra6832.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 632842..632927 -
Ggra6832.t1.CDS2Ggra6832.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 633061..633119 -
Ggra6832.t1.CDS3Ggra6832.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 633227..633288 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6832.t1.exon1Ggra6832.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 632842..632927 -
Ggra6832.t1.exon2Ggra6832.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 633061..633119 -
Ggra6832.t1.exon3Ggra6832.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 633227..633288 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6832.t1.intron1Ggra6832.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 632928..633060 -
Ggra6832.t1.intron2Ggra6832.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 633120..633226 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6832.t1.start1Ggra6832.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 633286..633288 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6832.t1 ID=Ggra6832.t1|Name=Ggra6832.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=69bp
MSEATVLQTFTKNLRGRHLYPFAIGFTSVLVVSGLLFRLNDEDYLDTPNK
RFAKPFVKKGAADDSHGH*
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spliced messenger RNA

>Ggra6832.t1 ID=Ggra6832.t1|Name=Ggra6832.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=207bp|location=Sequence derived from alignment at tig00000056_pilon:632842..633288- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGAGGCAACTGTGCTTCAGACCTTCACTAAGAACCTTCGTGGTCG
TCACTTGTATCCGTTCGCGATCGGATTCACTTCTGTGCTTGTGGTGAGTG
GTCTGCTCTTTCGACTGAACGACGAAGACTATCTCGACACTCCTAATAAG
CGATTTGCGAAGCCATTTGTGAAGAAGGGTGCCGCTGACGACAGCCATGG
CCATTGA
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protein sequence of Ggra6832.t1

>Ggra6832.t1 ID=Ggra6832.t1|Name=Ggra6832.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=69bp
MSEATVLQTFTKNLRGRHLYPFAIGFTSVLVVSGLLFRLNDEDYLDTPNK
RFAKPFVKKGAADDSHGH*
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mRNA from alignment at tig00000056_pilon:632842..633288-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6832.t1 ID=Ggra6832.t1|Name=Ggra6832.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=447bp|location=Sequence derived from alignment at tig00000056_pilon:632842..633288- (Gracilaria gracilis GNS1m male)
ATGTCGGAGGCAACTGTGCTTCAGACCTTCACTAAGAACCTTCGTGGTCG
TCACTTGTATCCGTACGTTCCGGTTCCAATCACACATACAAATGTGCCGT
AGTATTGCATCGGAACGGCTCTGACTGTGCATTGCTCTTCACATATTCGC
GCTCGGAACCGACGCTTAGGTTCGCGATCGGATTCACTTCTGTGCTTGTG
GTGAGTGGTCTGCTCTTTCGACTGAACGGTAAGTAAGCGGGCCAAAGTCG
TTTGCGCTACTCCTCTTCGCGATACACATCTTTTCGAAGTGAACGAACAT
TGTCTTTCGATCAATGCCCTTCAGGTTATCTGACATTGGTTTTGTTTTAT
ACCGAACCTAGACGAAGACTATCTCGACACTCCTAATAAGCGATTTGCGA
AGCCATTTGTGAAGAAGGGTGCCGCTGACGACAGCCATGGCCATTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:632842..633288-

>Ggra6832.t1 ID=Ggra6832.t1|Name=Ggra6832.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=207bp|location=Sequence derived from alignment at tig00000056_pilon:632842..633288- (Gracilaria gracilis GNS1m male)
ATGTCGGAGGCAACTGTGCTTCAGACCTTCACTAAGAACCTTCGTGGTCG
TCACTTGTATCCGTTCGCGATCGGATTCACTTCTGTGCTTGTGGTGAGTG
GTCTGCTCTTTCGACTGAACGACGAAGACTATCTCGACACTCCTAATAAG
CGATTTGCGAAGCCATTTGTGAAGAAGGGTGCCGCTGACGACAGCCATGG
CCATTGA
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