Ggra6829.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6829.t1
Unique NameGgra6829.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:629591..630205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703152.1
Preferred nameSBA1
PFAMsCS
Max annot lvl2759|Eukaryota
KEGG rclassRC00672
KEGG koko:K10858,ko:K13127,ko:K15730
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,ko03430,ko03460,map00590,map01100,map03430,map03460
KEGG ModuleM00295
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005911,GO:0006457,GO:0007275,GO:0008150,GO:0009506,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010449,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010648,GO:0010817,GO:0016020,GO:0019219,GO:0019222,GO:0022622,GO:0023051,GO:0023057,GO:0030054,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032204,GO:0032206,GO:0032210,GO:0032212,GO:0032501,GO:0032502,GO:0032879,GO:0033043,GO:0033044,GO:0035266,GO:0040007,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043392,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0048364,GO:0048507,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051049,GO:0051052,GO:0051054,GO:0051087,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051338,GO:0051972,GO:0055044,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0071944,GO:0080036,GO:0080037,GO:0080090,GO:0099402,GO:1904356,GO:1904358,GO:2000012,GO:2000112,GO:2000278,GO:2000573,GO:2001252
Evalue1.9e-46
EggNOG OGsKOG3158@1|root,KOG3158@2759|Eukaryota
EC5.3.99.3
Descriptionprostaglandin-E synthase activity
COG categoryK
BRITEko00000,ko00001,ko00002,ko01000,ko03041,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6829Ggra6829Gracilaria gracilis GNS1m malegenetig00000056_pilon 629591..630205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6829.t1Ggra6829.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 629591..630205 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6829.t1.start1Ggra6829.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 629591..629593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6829.t1.CDS1Ggra6829.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 629591..629595 +
Ggra6829.t1.CDS2Ggra6829.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 629707..630205 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6829.t1.exon1Ggra6829.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 629591..629595 +
Ggra6829.t1.exon2Ggra6829.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 629707..630205 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6829.t1.intron1Ggra6829.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 629596..629706 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6829.t1.stop1Ggra6829.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 630203..630205 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6829.t1 ID=Ggra6829.t1|Name=Ggra6829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=168bp
MSASKVLTPEFLWAQRKDQIYLTINVPNVKRAETTIKVTDDGHVYFKGPG
GAVGHEAEYILDITLFKPIKAEQSKYKVSARFVFFKIAKADSGPYWDRLL
KPEGRNIHCKIDWDNWKDEDEDENENEYSFGSQFADSKDLQDMDFGSGGS
TSDEEEEASSAPNTSDK*
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spliced messenger RNA

>Ggra6829.t1 ID=Ggra6829.t1|Name=Ggra6829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00000056_pilon:629591..630205+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCATCAAAGGTGCTTACGCCTGAGTTTCTTTGGGCGCAACGAAA
GGATCAGATATACCTAACTATCAACGTTCCGAACGTCAAGAGAGCCGAAA
CAACCATCAAAGTCACTGACGACGGTCACGTATACTTCAAGGGACCTGGC
GGAGCCGTTGGTCATGAAGCGGAATACATTCTCGACATAACTCTCTTCAA
GCCAATCAAGGCCGAACAATCGAAGTACAAGGTCTCTGCGCGATTTGTGT
TCTTCAAAATCGCCAAGGCCGACTCTGGTCCATATTGGGATCGCCTACTC
AAACCGGAGGGGCGTAACATTCACTGCAAAATCGACTGGGATAACTGGAa
ggatgaggatgaggatgagaatgagaatgagtatTCTTTCGGCTCTCAGT
TTGCTGATAGTAAGGATTTGCAAGACATGGACTTCGGTTCCGGTGGCTCT
ACTTCTGACGAAGAGGAAGAAGCAAGTAGCGCTCCGAATACTTCGGACAA
GTAA
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protein sequence of Ggra6829.t1

>Ggra6829.t1 ID=Ggra6829.t1|Name=Ggra6829.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=168bp
MSASKVLTPEFLWAQRKDQIYLTINVPNVKRAETTIKVTDDGHVYFKGPG
GAVGHEAEYILDITLFKPIKAEQSKYKVSARFVFFKIAKADSGPYWDRLL
KPEGRNIHCKIDWDNWKDEDEDENENEYSFGSQFADSKDLQDMDFGSGGS
TSDEEEEASSAPNTSDK*
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mRNA from alignment at tig00000056_pilon:629591..630205+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6829.t1 ID=Ggra6829.t1|Name=Ggra6829.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000056_pilon:629591..630205+ (Gracilaria gracilis GNS1m male)
ATGAGGTGAGTTCAACCTTCTCTTTCGGCCGCACCCTTGCTTTCTCCGCG
GCAAGTTCGCGTGTTCTGACCGAATTGATTCCCTTCAACTTTTGCACCTC
TTATTTGCGTCGGCAGTGCATCAAAGGTGCTTACGCCTGAGTTTCTTTGG
GCGCAACGAAAGGATCAGATATACCTAACTATCAACGTTCCGAACGTCAA
GAGAGCCGAAACAACCATCAAAGTCACTGACGACGGTCACGTATACTTCA
AGGGACCTGGCGGAGCCGTTGGTCATGAAGCGGAATACATTCTCGACATA
ACTCTCTTCAAGCCAATCAAGGCCGAACAATCGAAGTACAAGGTCTCTGC
GCGATTTGTGTTCTTCAAAATCGCCAAGGCCGACTCTGGTCCATATTGGG
ATCGCCTACTCAAACCGGAGGGGCGTAACATTCACTGCAAAATCGACTGG
GATAACTGGAaggatgaggatgaggatgagaatgagaatgagtatTCTTT
CGGCTCTCAGTTTGCTGATAGTAAGGATTTGCAAGACATGGACTTCGGTT
CCGGTGGCTCTACTTCTGACGAAGAGGAAGAAGCAAGTAGCGCTCCGAAT
ACTTCGGACAAGTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:629591..630205+

>Ggra6829.t1 ID=Ggra6829.t1|Name=Ggra6829.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00000056_pilon:629591..630205+ (Gracilaria gracilis GNS1m male)
ATGAGTGCATCAAAGGTGCTTACGCCTGAGTTTCTTTGGGCGCAACGAAA
GGATCAGATATACCTAACTATCAACGTTCCGAACGTCAAGAGAGCCGAAA
CAACCATCAAAGTCACTGACGACGGTCACGTATACTTCAAGGGACCTGGC
GGAGCCGTTGGTCATGAAGCGGAATACATTCTCGACATAACTCTCTTCAA
GCCAATCAAGGCCGAACAATCGAAGTACAAGGTCTCTGCGCGATTTGTGT
TCTTCAAAATCGCCAAGGCCGACTCTGGTCCATATTGGGATCGCCTACTC
AAACCGGAGGGGCGTAACATTCACTGCAAAATCGACTGGGATAACTGGAa
ggatgaggatgaggatgagaatgagaatgagtatTCTTTCGGCTCTCAGT
TTGCTGATAGTAAGGATTTGCAAGACATGGACTTCGGTTCCGGTGGCTCT
ACTTCTGACGAAGAGGAAGAAGCAAGTAGCGCTCCGAATACTTCGGACAA
GTAA
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