Ggra6828.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6828.t1
Unique Name	Ggra6828.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:628073..629074 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	57918.XP_004303342.1
PFAMs	AHSA1,Aha1_N
Max annot lvl	35493\|Streptophyta
GOs	GO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0008047,GO:0008150,GO:0030234,GO:0031072,GO:0032781,GO:0043085,GO:0043462,GO:0044093,GO:0044424,GO:0044444,GO:0044464,GO:0050790,GO:0051087,GO:0051336,GO:0051345,GO:0051879,GO:0060589,GO:0060590,GO:0065007,GO:0065009,GO:0098772
Evalue	4.36e-40
EggNOG OGs	COG5580@1\|root,KOG2936@2759\|Eukaryota,37KPG@33090\|Viridiplantae,3GG7A@35493\|Streptophyta,4JIR0@91835\|fabids
Description	Activator of 90 kDa heat shock protein
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6828	Ggra6828	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 628073..629074 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6828.t1.stop1	Ggra6828.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 628073..628075 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6828.t1.CDS1	Ggra6828.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 628073..629074 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6828.t1.exon1	Ggra6828.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 628073..629074 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6828.t1.start1	Ggra6828.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 629072..629074 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6828.t1	Ggra6828.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 628073..629074 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:628073..629074-
coding sequence from alignment at tig00000056_pilon:628073..629074-

mRNA sequence

>Ggra6828.t1 ID=Ggra6828.t1|Name=Ggra6828.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MALQGEGDPRWVVRERNDGRNVNGWHWEDRDVTMWAQQRIKELVNHSVCS
CDYGDTVVAVQSIDSVEGDATLYNRKGVLKVLYDLKVVGKWSTDADDEEE
RAHGEFKFELFDEDPEVTATFDAKAKKDSGAKQQFMKKVVPIMKEQCGIF
IKEMHEGAGQAVDGLRKPSKKKENESKVTDYLRTGMNQKPKARKESNLTL
VVMKDVFTCSAMDVYLALTDVRRLEAITRCKAVSEATVGGKQTLMNGVVK
ATFLRLEQGKQVVMQWKLDSWGDEATAGVATVDIDEEDGKTEVGITIEDV
PKAMASKTEGFWRVQILQAMKVVMGWGSASKFL*

spliced messenger RNA

>Ggra6828.t1 ID=Ggra6828.t1|Name=Ggra6828.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000056_pilon:628073..629074- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTGCAGGGGGAGGGCGACCCTCGATGGGTTGTGCGCGAGAGGAA
TGACGGACGAAACGTAAACGGCTGGCATTGGGAAGATAGGGATGTGACAA
TGTGGGCGCAGCAGAGAATCAAGGAGCTTGTGAACCACTCCGTCTGCTCG
TGCGACTACGGCGACACTGTCGTGGCTGTGCAGTCCATTGACTCCGTTGA
GGGCGACGCAACATTGTACAATAGAAAGGGCGTCCTCAAGGTGCTGTACG
ACCTCAAGGTGGTGGGCAAATGGAGCACAGATGCGGATGATGAGGAGGAA
CGAGCGCACGGAGAATTCAAATTCGAGCTGTTCGACGAGGACCCCGAGGT
CACTGCCACGTTCGACGCCAAGGCGAAGAAGGATTCCGGCGCAAAGCAGC
AGTTTATGAAAAAAGTGGTGCCTATCATGAAAGAGCAGTGTGGCATCTTC
ATAAAGGAGATGCACGAAGGCGCTGGACAGGCGGTGGATGGACTGCGTAA
GCCAAGCAAGAAGAAAGAGAATGAGAGCAAAGTGACGGACTATCTGCGCA
CGGGCATGAATCAGAAGCCAAAGGCTCGCAAGGAGAGTAACCTGACACTC
GTGGTCATGAAAGACGTGTTCACGTGCTCCGCAATGGATGTGTACCTGGC
GCTGACGGACGTGCGACGATTGGAAGCAATCACGCGGTGCAAAGCGGTGT
CAGAAGCGACGGTAGGTGGAAAACAGACACTGATGAACGGGGTGGTGAAG
GCGACGTTCTTGCGGTTGGAACAGGGGAAGCAAGTGGTGATGCAGTGGAA
GTTAGACAGCTGGGGGGATGAAGCGACGGCCGGAGTGGCCACTGTTGACA
TTGACGAGGAGGACGGAAAGACAGAAGTAGGCATCACTATTGAAGACGTG
CCAAAGGCGATGGCGTCGAAGACGGAGGGCTTTTGGCGCGTACAGATTCT
GCAGGCAATGAAGGTAGTGATGGGGTGGGGAAGCGCATCAAAGTTTTTGT
AA

protein sequence of Ggra6828.t1

>Ggra6828.t1 ID=Ggra6828.t1|Name=Ggra6828.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MALQGEGDPRWVVRERNDGRNVNGWHWEDRDVTMWAQQRIKELVNHSVCS
CDYGDTVVAVQSIDSVEGDATLYNRKGVLKVLYDLKVVGKWSTDADDEEE
RAHGEFKFELFDEDPEVTATFDAKAKKDSGAKQQFMKKVVPIMKEQCGIF
IKEMHEGAGQAVDGLRKPSKKKENESKVTDYLRTGMNQKPKARKESNLTL
VVMKDVFTCSAMDVYLALTDVRRLEAITRCKAVSEATVGGKQTLMNGVVK
ATFLRLEQGKQVVMQWKLDSWGDEATAGVATVDIDEEDGKTEVGITIEDV
PKAMASKTEGFWRVQILQAMKVVMGWGSASKFL*

mRNA from alignment at tig00000056_pilon:628073..629074-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6828.t1 ID=Ggra6828.t1|Name=Ggra6828.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000056_pilon:628073..629074- (Gracilaria gracilis GNS1m male)
ATGGCGCTGCAGGGGGAGGGCGACCCTCGATGGGTTGTGCGCGAGAGGAA
TGACGGACGAAACGTAAACGGCTGGCATTGGGAAGATAGGGATGTGACAA
TGTGGGCGCAGCAGAGAATCAAGGAGCTTGTGAACCACTCCGTCTGCTCG
TGCGACTACGGCGACACTGTCGTGGCTGTGCAGTCCATTGACTCCGTTGA
GGGCGACGCAACATTGTACAATAGAAAGGGCGTCCTCAAGGTGCTGTACG
ACCTCAAGGTGGTGGGCAAATGGAGCACAGATGCGGATGATGAGGAGGAA
CGAGCGCACGGAGAATTCAAATTCGAGCTGTTCGACGAGGACCCCGAGGT
CACTGCCACGTTCGACGCCAAGGCGAAGAAGGATTCCGGCGCAAAGCAGC
AGTTTATGAAAAAAGTGGTGCCTATCATGAAAGAGCAGTGTGGCATCTTC
ATAAAGGAGATGCACGAAGGCGCTGGACAGGCGGTGGATGGACTGCGTAA
GCCAAGCAAGAAGAAAGAGAATGAGAGCAAAGTGACGGACTATCTGCGCA
CGGGCATGAATCAGAAGCCAAAGGCTCGCAAGGAGAGTAACCTGACACTC
GTGGTCATGAAAGACGTGTTCACGTGCTCCGCAATGGATGTGTACCTGGC
GCTGACGGACGTGCGACGATTGGAAGCAATCACGCGGTGCAAAGCGGTGT
CAGAAGCGACGGTAGGTGGAAAACAGACACTGATGAACGGGGTGGTGAAG
GCGACGTTCTTGCGGTTGGAACAGGGGAAGCAAGTGGTGATGCAGTGGAA
GTTAGACAGCTGGGGGGATGAAGCGACGGCCGGAGTGGCCACTGTTGACA
TTGACGAGGAGGACGGAAAGACAGAAGTAGGCATCACTATTGAAGACGTG
CCAAAGGCGATGGCGTCGAAGACGGAGGGCTTTTGGCGCGTACAGATTCT
GCAGGCAATGAAGGTAGTGATGGGGTGGGGAAGCGCATCAAAGTTTTTGT
AA

Coding sequence (CDS) from alignment at tig00000056_pilon:628073..629074-

>Ggra6828.t1 ID=Ggra6828.t1|Name=Ggra6828.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000056_pilon:628073..629074- (Gracilaria gracilis GNS1m male)
ATGGCGCTGCAGGGGGAGGGCGACCCTCGATGGGTTGTGCGCGAGAGGAA
TGACGGACGAAACGTAAACGGCTGGCATTGGGAAGATAGGGATGTGACAA
TGTGGGCGCAGCAGAGAATCAAGGAGCTTGTGAACCACTCCGTCTGCTCG
TGCGACTACGGCGACACTGTCGTGGCTGTGCAGTCCATTGACTCCGTTGA
GGGCGACGCAACATTGTACAATAGAAAGGGCGTCCTCAAGGTGCTGTACG
ACCTCAAGGTGGTGGGCAAATGGAGCACAGATGCGGATGATGAGGAGGAA
CGAGCGCACGGAGAATTCAAATTCGAGCTGTTCGACGAGGACCCCGAGGT
CACTGCCACGTTCGACGCCAAGGCGAAGAAGGATTCCGGCGCAAAGCAGC
AGTTTATGAAAAAAGTGGTGCCTATCATGAAAGAGCAGTGTGGCATCTTC
ATAAAGGAGATGCACGAAGGCGCTGGACAGGCGGTGGATGGACTGCGTAA
GCCAAGCAAGAAGAAAGAGAATGAGAGCAAAGTGACGGACTATCTGCGCA
CGGGCATGAATCAGAAGCCAAAGGCTCGCAAGGAGAGTAACCTGACACTC
GTGGTCATGAAAGACGTGTTCACGTGCTCCGCAATGGATGTGTACCTGGC
GCTGACGGACGTGCGACGATTGGAAGCAATCACGCGGTGCAAAGCGGTGT
CAGAAGCGACGGTAGGTGGAAAACAGACACTGATGAACGGGGTGGTGAAG
GCGACGTTCTTGCGGTTGGAACAGGGGAAGCAAGTGGTGATGCAGTGGAA
GTTAGACAGCTGGGGGGATGAAGCGACGGCCGGAGTGGCCACTGTTGACA
TTGACGAGGAGGACGGAAAGACAGAAGTAGGCATCACTATTGAAGACGTG
CCAAAGGCGATGGCGTCGAAGACGGAGGGCTTTTGGCGCGTACAGATTCT
GCAGGCAATGAAGGTAGTGATGGGGTGGGGAAGCGCATCAAAGTTTTTGT
AA