Ggra6825.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6825.t1
Unique NameGgra6825.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length82
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:624996..625345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706865.1
Preferred nameMINOS1
PFAMsDUF1232,DUF543
Max annot lvl2759|Eukaryota
KEGG koko:K15707,ko:K17784,ko:K19558
KEGG Pathwayko04350,map04350
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006950,GO:0006952,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007275,GO:0008150,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009792,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0019866,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032592,GO:0032991,GO:0042407,GO:0042742,GO:0043009,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044284,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0048856,GO:0050896,GO:0051704,GO:0051707,GO:0061024,GO:0061617,GO:0071840,GO:0098542,GO:0098573,GO:0098796,GO:0098798,GO:0098800
Evalue7.06e-14
EggNOG OGsKOG4604@1|root,KOG4604@2759|Eukaryota
EC2.3.2.27
Descriptioncristae formation
COG categoryS
BRITEko00000,ko00001,ko01000,ko03029,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6825Ggra6825Gracilaria gracilis GNS1m malegenetig00000056_pilon 624996..625345 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6825.t1Ggra6825.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 624996..625345 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6825.t1.stop1Ggra6825.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 624996..624998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6825.t1.CDS1Ggra6825.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 624996..625126 -
Ggra6825.t1.CDS2Ggra6825.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 625231..625345 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6825.t1.exon1Ggra6825.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 624996..625126 -
Ggra6825.t1.exon2Ggra6825.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 625231..625345 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6825.t1.intron1Ggra6825.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 625127..625230 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6825.t1.start1Ggra6825.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 625343..625345 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6825.t1 ID=Ggra6825.t1|Name=Ggra6825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=82bp
MVSSELKVAEKWDSALEKGIKRMAYGAIAGGIVAALMFRGVGIRSMIIGV
GTGTGIGITYAEAKRDFEELSSTAAPAKAEI*
back to top

spliced messenger RNA

>Ggra6825.t1 ID=Ggra6825.t1|Name=Ggra6825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=246bp|location=Sequence derived from alignment at tig00000056_pilon:624996..625345- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATCGAGTGAGCTCAAGGTGGCAGAGAAATGGGACTCCGCGCTTGA
AAAGGGCATCAAGCGCATGGCGTACGGCGCGATCGCCGGCGGAATCGTCG
CTGCGCTCATGTTTCGTGGTGTGGGAATTCGATCGATGATCATTGGAGTT
GGTACTGGTACTGGTATCGGTATCACGTACGCGGAAGCGAAGCGCGACTT
TGAAGAATTATCGAGCACTGCTGCGCCTGCGAAAGCTGAGATCTAG
back to top

protein sequence of Ggra6825.t1

>Ggra6825.t1 ID=Ggra6825.t1|Name=Ggra6825.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=82bp
MVSSELKVAEKWDSALEKGIKRMAYGAIAGGIVAALMFRGVGIRSMIIGV
GTGTGIGITYAEAKRDFEELSSTAAPAKAEI*
back to top

mRNA from alignment at tig00000056_pilon:624996..625345-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6825.t1 ID=Ggra6825.t1|Name=Ggra6825.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp|location=Sequence derived from alignment at tig00000056_pilon:624996..625345- (Gracilaria gracilis GNS1m male)
ATGGTATCGAGTGAGCTCAAGGTGGCAGAGAAATGGGACTCCGCGCTTGA
AAAGGGCATCAAGCGCATGGCGTACGGCGCGATCGCCGGCGGAATCGTCG
CTGCGCTCATGTTTCGTACGTTGTTGATTTCACGCTGCTTTGGCGAACGT
CATGGTCGCGTATACTCGTTGTCGCTAACTGCGTTTGATTTGTTCAAACT
ACCATTTTTTTTTGTGTAGGTGGTGTGGGAATTCGATCGATGATCATTGG
AGTTGGTACTGGTACTGGTATCGGTATCACGTACGCGGAAGCGAAGCGCG
ACTTTGAAGAATTATCGAGCACTGCTGCGCCTGCGAAAGCTGAGATCTAG
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:624996..625345-

>Ggra6825.t1 ID=Ggra6825.t1|Name=Ggra6825.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=246bp|location=Sequence derived from alignment at tig00000056_pilon:624996..625345- (Gracilaria gracilis GNS1m male)
ATGGTATCGAGTGAGCTCAAGGTGGCAGAGAAATGGGACTCCGCGCTTGA
AAAGGGCATCAAGCGCATGGCGTACGGCGCGATCGCCGGCGGAATCGTCG
CTGCGCTCATGTTTCGTGGTGTGGGAATTCGATCGATGATCATTGGAGTT
GGTACTGGTACTGGTATCGGTATCACGTACGCGGAAGCGAAGCGCGACTT
TGAAGAATTATCGAGCACTGCTGCGCCTGCGAAAGCTGAGATCTAG
back to top