Ggra6823.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6823.t1
Unique NameGgra6823.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:622880..623701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6823Ggra6823Gracilaria gracilis GNS1m malegenetig00000056_pilon 622880..623701 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6823.t1.stop1Ggra6823.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 622880..622882 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6823.t1.CDS1Ggra6823.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 622880..623701 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6823.t1.exon1Ggra6823.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 622880..623701 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6823.t1.start1Ggra6823.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 623699..623701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6823.t1Ggra6823.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 622880..623701 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6823.t1 ID=Ggra6823.t1|Name=Ggra6823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=274bp
MNSFALLQDDVEDTEVAYDNSAAQKAPTTDAPVPAVDVRDAAVAQAPEEL
NGADPTAPSPDAAANTNTNTDADADADADPENAHKADQKPPKQKDLTLEE
YLAKKAAMSSGLASLNIRGLRQANDGVDGFEKMSVLKKNNSPDDNSIMHE
VAVKAQQQNKTIKDSTQAAVARNAEIQKFFKPDPSERRRGEYRRNYGERR
GAARGRFEHRADRGRGERGRGGRGGRGAYRGAYRGGFNNRQYDNETDHHR
TVNGRQDTEDVPNVDDTSAFPSL*
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spliced messenger RNA

>Ggra6823.t1 ID=Ggra6823.t1|Name=Ggra6823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000056_pilon:622880..623701- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCCTTCGCGCTGTTGCAGGACGACGTGGAGGACACTGAGGTTGC
TTATGACAACAGCGCCGCGCAGAAGGCGCCCACCACTGACGCGCCAGTTC
CTGCCGTCGACGTGCGTGATGCCGCCGTCGCTCAGGCCCCTGAGGAGCTG
AATGGCGCCGATCCTACCGCGCCTAGCCCCGACGCCGCCGCCAACACCAA
CACCAACACCGACGCCGACGCCGACGCCGACGCCGACCCAGAAAATGCAC
ACAAGGCAGATCAGAAACCACCCAAGCAGAAGGATCTCACCTTGGAAGAG
TACTTGGCTAAGAAGGCCGCCATGTCCTCAGGGCTTGCTTCTCTCAACAT
CCGTGGCCTCAGACAAGCCAATGACGGCGTCGATGGCTTCGAGAAGATGA
GCGTGCTCAAGAAGAATAACTCTCCCGATGACAACTCTATCATGCATGAA
GTGGCCGTCAAGGCTCAACAGCAAAACAAGACAATAAAGGATTCCACCCA
GGCCGCCGTCGCAAGAAACGCCGAGATCCAAAAGTTCTTCAAGCCCGATC
CGTCCGAAAGAAGACGCGGCGAATATCGACGCAACTATGGAGAACGACGA
GGAGCAGCTCGTGGAAGATTCGAACACAGAGCTGACAGAGGAAGAGGAGA
GAGAGGAAGAGGCGGAAGAGGTGGCAGAGGCGCTTATCGTGGCGCCTATC
GTGGTGGCTTTAACAACAGACAGTACGATAACGAAACTGATCATCATCGG
ACGGTTAATGGCAGGCAGGACACTGAAGATGTCCCGAATGTGGATGATAC
CTCCGCCTTTCCAAGCCTGTAA
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protein sequence of Ggra6823.t1

>Ggra6823.t1 ID=Ggra6823.t1|Name=Ggra6823.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=274bp
MNSFALLQDDVEDTEVAYDNSAAQKAPTTDAPVPAVDVRDAAVAQAPEEL
NGADPTAPSPDAAANTNTNTDADADADADPENAHKADQKPPKQKDLTLEE
YLAKKAAMSSGLASLNIRGLRQANDGVDGFEKMSVLKKNNSPDDNSIMHE
VAVKAQQQNKTIKDSTQAAVARNAEIQKFFKPDPSERRRGEYRRNYGERR
GAARGRFEHRADRGRGERGRGGRGGRGAYRGAYRGGFNNRQYDNETDHHR
TVNGRQDTEDVPNVDDTSAFPSL*
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mRNA from alignment at tig00000056_pilon:622880..623701-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6823.t1 ID=Ggra6823.t1|Name=Ggra6823.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000056_pilon:622880..623701- (Gracilaria gracilis GNS1m male)
ATGAACTCCTTCGCGCTGTTGCAGGACGACGTGGAGGACACTGAGGTTGC
TTATGACAACAGCGCCGCGCAGAAGGCGCCCACCACTGACGCGCCAGTTC
CTGCCGTCGACGTGCGTGATGCCGCCGTCGCTCAGGCCCCTGAGGAGCTG
AATGGCGCCGATCCTACCGCGCCTAGCCCCGACGCCGCCGCCAACACCAA
CACCAACACCGACGCCGACGCCGACGCCGACGCCGACCCAGAAAATGCAC
ACAAGGCAGATCAGAAACCACCCAAGCAGAAGGATCTCACCTTGGAAGAG
TACTTGGCTAAGAAGGCCGCCATGTCCTCAGGGCTTGCTTCTCTCAACAT
CCGTGGCCTCAGACAAGCCAATGACGGCGTCGATGGCTTCGAGAAGATGA
GCGTGCTCAAGAAGAATAACTCTCCCGATGACAACTCTATCATGCATGAA
GTGGCCGTCAAGGCTCAACAGCAAAACAAGACAATAAAGGATTCCACCCA
GGCCGCCGTCGCAAGAAACGCCGAGATCCAAAAGTTCTTCAAGCCCGATC
CGTCCGAAAGAAGACGCGGCGAATATCGACGCAACTATGGAGAACGACGA
GGAGCAGCTCGTGGAAGATTCGAACACAGAGCTGACAGAGGAAGAGGAGA
GAGAGGAAGAGGCGGAAGAGGTGGCAGAGGCGCTTATCGTGGCGCCTATC
GTGGTGGCTTTAACAACAGACAGTACGATAACGAAACTGATCATCATCGG
ACGGTTAATGGCAGGCAGGACACTGAAGATGTCCCGAATGTGGATGATAC
CTCCGCCTTTCCAAGCCTGTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:622880..623701-

>Ggra6823.t1 ID=Ggra6823.t1|Name=Ggra6823.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=822bp|location=Sequence derived from alignment at tig00000056_pilon:622880..623701- (Gracilaria gracilis GNS1m male)
ATGAACTCCTTCGCGCTGTTGCAGGACGACGTGGAGGACACTGAGGTTGC
TTATGACAACAGCGCCGCGCAGAAGGCGCCCACCACTGACGCGCCAGTTC
CTGCCGTCGACGTGCGTGATGCCGCCGTCGCTCAGGCCCCTGAGGAGCTG
AATGGCGCCGATCCTACCGCGCCTAGCCCCGACGCCGCCGCCAACACCAA
CACCAACACCGACGCCGACGCCGACGCCGACGCCGACCCAGAAAATGCAC
ACAAGGCAGATCAGAAACCACCCAAGCAGAAGGATCTCACCTTGGAAGAG
TACTTGGCTAAGAAGGCCGCCATGTCCTCAGGGCTTGCTTCTCTCAACAT
CCGTGGCCTCAGACAAGCCAATGACGGCGTCGATGGCTTCGAGAAGATGA
GCGTGCTCAAGAAGAATAACTCTCCCGATGACAACTCTATCATGCATGAA
GTGGCCGTCAAGGCTCAACAGCAAAACAAGACAATAAAGGATTCCACCCA
GGCCGCCGTCGCAAGAAACGCCGAGATCCAAAAGTTCTTCAAGCCCGATC
CGTCCGAAAGAAGACGCGGCGAATATCGACGCAACTATGGAGAACGACGA
GGAGCAGCTCGTGGAAGATTCGAACACAGAGCTGACAGAGGAAGAGGAGA
GAGAGGAAGAGGCGGAAGAGGTGGCAGAGGCGCTTATCGTGGCGCCTATC
GTGGTGGCTTTAACAACAGACAGTACGATAACGAAACTGATCATCATCGG
ACGGTTAATGGCAGGCAGGACACTGAAGATGTCCCGAATGTGGATGATAC
CTCCGCCTTTCCAAGCCTGTAA
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