Ggra6822.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6822.t1
Unique NameGgra6822.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:619938..621186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000020656
Max annot lvl121069|Pythiales
Evalue3.91e-09
EggNOG OGs2CYA8@1|root,2S34V@2759|Eukaryota,1MI7F@121069|Pythiales
Descriptionfunction. Source PGD
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6822Ggra6822Gracilaria gracilis GNS1m malegenetig00000056_pilon 619938..621186 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6822.t1Ggra6822.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 619938..621186 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6822.t1.stop1Ggra6822.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 619938..619940 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6822.t1.CDS1Ggra6822.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 619938..619950 -
Ggra6822.t1.CDS2Ggra6822.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 620527..620558 -
Ggra6822.t1.CDS3Ggra6822.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 620617..620938 -
Ggra6822.t1.CDS4Ggra6822.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000056_pilon 621047..621186 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6822.t1.exon1Ggra6822.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 619938..619950 -
Ggra6822.t1.exon2Ggra6822.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 620527..620558 -
Ggra6822.t1.exon3Ggra6822.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 620617..620938 -
Ggra6822.t1.exon4Ggra6822.t1.exon4Gracilaria gracilis GNS1m maleexontig00000056_pilon 621047..621186 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6822.t1.intron1Ggra6822.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 619951..620526 -
Ggra6822.t1.intron2Ggra6822.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 620559..620616 -
Ggra6822.t1.intron3Ggra6822.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000056_pilon 620939..621046 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6822.t1.start1Ggra6822.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 621184..621186 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6822.t1 ID=Ggra6822.t1|Name=Ggra6822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=169bp
MALTREAIESADEYLKMDWDVIHIFHTTRLIITLPSSNTPLTSNEADALP
LLFNSREYALRAGIMLNSEDFDVHQWESTEGVDLVYGRRGDAVSGKGACA
FRLKKGNFPAVYGAISYSFPSLSTNAVTKLIEFLNDLPEIHGPLPTPDSS
LSTTKDIYFDPLPPITYS*
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spliced messenger RNA

>Ggra6822.t1 ID=Ggra6822.t1|Name=Ggra6822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000056_pilon:619938..621186- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCTCACACGAGAGGCAATAGAAAGTGCTGACGAGTATCTGAAGAT
GGACTGGGATGTGATTCACATCTTCCATACTACAAGATTAATAATCACAC
TTCCTTCCTCCAACACACCATTAACATCAAACGAAGCAGATGCACTTCCC
CTTCTCTTCAATTCTCGAGAGTACGCGCTCAGAGCGGGTATTATGCTCAA
CTCTGAAGACTTTGATGTCCACCAATGGGAATCTACCGAAGGTGTGGATT
TAGTGTATGGGAGACGAGGAGACGCAGTCTCAGGGAAGGGCGCTTGTGCG
TTTCGATTGAAGAAAGGTAATTTTCCTGCAGTATACGGGGCGATATCGTA
CTCCTTCCCGTCTCTTTCTACAAATGCTGTTACAAAGTTGATAGAGTTCC
TGAACGATTTGCCTGAGATACATGGACCTTTACCCACTCCAGATTCTTCA
CTCTCGACAACAAAGGATATCTACTTCGATCCTCTTCCTCCTATCACATA
CTCCTGA
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protein sequence of Ggra6822.t1

>Ggra6822.t1 ID=Ggra6822.t1|Name=Ggra6822.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=169bp
MALTREAIESADEYLKMDWDVIHIFHTTRLIITLPSSNTPLTSNEADALP
LLFNSREYALRAGIMLNSEDFDVHQWESTEGVDLVYGRRGDAVSGKGACA
FRLKKGNFPAVYGAISYSFPSLSTNAVTKLIEFLNDLPEIHGPLPTPDSS
LSTTKDIYFDPLPPITYS*
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mRNA from alignment at tig00000056_pilon:619938..621186-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6822.t1 ID=Ggra6822.t1|Name=Ggra6822.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1249bp|location=Sequence derived from alignment at tig00000056_pilon:619938..621186- (Gracilaria gracilis GNS1m male)
ATGGCGCTCACACGAGAGGCAATAGAAAGTGCTGACGAGTATCTGAAGAT
GGACTGGGATGTGATTCACATCTTCCATACTACAAGATTAATAATCACAC
TTCCTTCCTCCAACACACCATTAACATCAAACGAAGCAGAGTAAGTTCCT
TCGCACAATTTCCTTTTGCATCTGCTGTGAACGAATACCATTGCCGTCCA
TGTTATTAATCTCTTTCTGACAGCTCCTTCATCTGATTGCTCTGCTAGTG
CACTTCCCCTTCTCTTCAATTCTCGAGAGTACGCGCTCAGAGCGGGTATT
ATGCTCAACTCTGAAGACTTTGATGTCCACCAATGGGAATCTACCGAAGG
TGTGGATTTAGTGTATGGGAGACGAGGAGACGCAGTCTCAGGGAAGGGCG
CTTGTGCGTTTCGATTGAAGAAAGGTAATTTTCCTGCAGTATACGGGGCG
ATATCGTACTCCTTCCCGTCTCTTTCTACAAATGCTGTTACAAAGTTGAT
AGAGTTCCTGAACGATTTGCCTGAGATACATGGACCTTTACCCACTCCAG
ATTCTTCACTCTCGACAACAGTGAGTTGACGGCAGTATCTCTTCAGTCTA
AGGTTGTCACATCTCCTTGTTGGAACAGAAGGATATCTACTTCGATCCTC
TTCCTCCTATGTGGCTCCCCGATCCCAAGGAGCGATTGATTCTCTGTGCT
TCTGTTTTTTTAAGCGCTACCCGTGGTAATCAGCAGAACAATGCTAAAGG
TGTTCTCTGAGTACCTCGTGGTCCGTCGAACTCCGATGCGATGTCGAAGA
TGCAAAAAGCGAAATGGACACGCAACCGAGACTCACATCGAAAGCAGGCT
TCCATGTCAGCGATAGAAAGTGTACTGGAGTTTCTCGTATCTTGTAGACC
GCCCTTCAGAGTCTAAAAGGTCTAACTATATACTCTTCAAGGAAGATGTG
TAGGACACCCATAACAAAGAGAGAGTAAGACGGAGAGGGAAGGAAAATTC
TCTGAGTGCCTAGGGTTAGTCGAGCTACAGCGGGATTAGGATGTACTCCA
AGTTACAGGGTACATGTTTATGTAAATACGCTCTGACATATCGTAACTTC
GACAAAGCACTACAGAGTAGTGCTCTATTAGCGTACATTAATATCCCCGG
AATGAATGAGTTGTTAAAAACGATTCTGTCCAGCACTTATATTAGTCGTA
AAGTACATGGCGCTGATGACTGAGTGTAAAGATAAGCACATACTCCTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:619938..621186-

>Ggra6822.t1 ID=Ggra6822.t1|Name=Ggra6822.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=507bp|location=Sequence derived from alignment at tig00000056_pilon:619938..621186- (Gracilaria gracilis GNS1m male)
ATGGCGCTCACACGAGAGGCAATAGAAAGTGCTGACGAGTATCTGAAGAT
GGACTGGGATGTGATTCACATCTTCCATACTACAAGATTAATAATCACAC
TTCCTTCCTCCAACACACCATTAACATCAAACGAAGCAGATGCACTTCCC
CTTCTCTTCAATTCTCGAGAGTACGCGCTCAGAGCGGGTATTATGCTCAA
CTCTGAAGACTTTGATGTCCACCAATGGGAATCTACCGAAGGTGTGGATT
TAGTGTATGGGAGACGAGGAGACGCAGTCTCAGGGAAGGGCGCTTGTGCG
TTTCGATTGAAGAAAGGTAATTTTCCTGCAGTATACGGGGCGATATCGTA
CTCCTTCCCGTCTCTTTCTACAAATGCTGTTACAAAGTTGATAGAGTTCC
TGAACGATTTGCCTGAGATACATGGACCTTTACCCACTCCAGATTCTTCA
CTCTCGACAACAAAGGATATCTACTTCGATCCTCTTCCTCCTATCACATA
CTCCTGA
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