Ggra6812.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6812.t1
Unique NameGgra6812.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length421
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:593543..594805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709259.1
PFAMsRubis-subs-bind,SET
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00031,RC00042,RC00060,RC00181,RC00496
KEGG koko:K00015,ko:K05302,ko:K10134,ko:K12592,ko:K19199
KEGG ReactionR00717,R01388,R03875,R04866,R04867
KEGG Pathwayko00310,ko00630,ko01100,ko01110,ko01120,ko03018,ko04115,map00310,map00630,map01100,map01110,map01120,map03018,map04115
GOsGO:0000229,GO:0000427,GO:0000428,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006351,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009058,GO:0009059,GO:0009295,GO:0009314,GO:0009416,GO:0009507,GO:0009508,GO:0009532,GO:0009534,GO:0009536,GO:0009579,GO:0009628,GO:0009657,GO:0009658,GO:0009668,GO:0009987,GO:0010027,GO:0010467,GO:0016043,GO:0016070,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018026,GO:0018130,GO:0018193,GO:0018205,GO:0019438,GO:0019538,GO:0022613,GO:0030880,GO:0031974,GO:0031976,GO:0031981,GO:0031984,GO:0032259,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0042254,GO:0042646,GO:0042793,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0061024,GO:0061695,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097659,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902494,GO:1990234
Evalue1.27e-37
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota
EC1.1.1.26,2.1.1.43
Descriptionpeptidyl-lysine monomethylation
COG categoryI
BRITEko00000,ko00001,ko01000,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6812Ggra6812Gracilaria gracilis GNS1m malegenetig00000056_pilon 593543..594805 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6812.t1.start1Ggra6812.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 593543..593545 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6812.t1.CDS1Ggra6812.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 593543..594805 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6812.t1.exon1Ggra6812.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 593543..594805 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6812.t1.stop1Ggra6812.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 594803..594805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6812.t1Ggra6812.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 593543..594805 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6812.t1 ID=Ggra6812.t1|Name=Ggra6812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=421bp
MHVLANLDSSFWKGAPWHLRLTVLLLDECLAGSASYFSTYVKNLPAEPTS
VLWAYRRHGRSSLVSQLSPYHMMDSADLYVRAIKSRYQSFRKSLPPHLRS
LVSIEQFCWASSNVVSRAFGIPAASRSEKPVGYALFPMLDMANGSVHVPT
RIRYDNTIDCIRITTGASFSPGEQVYVSYGSKSNDDFMFFYGFVEGDNPS
NTVTISDFREWMLQLAHQQNSGLWDRKLAILRRIGLANKDNIFAFHMDKL
DDDLMTALRIAIATAQELDDFEHNMRTKPASKKYVTINLENELKAWDVLM
EKCHSLLADLPQFTEADQEHLNKILERKPCTAEWDFVQASSEGELLFCHE
RGRVLRATLDRVSHFSKVSQSVGRICTVLLPPSQQLLRADLFQFASESTG
AAEIRKLKISHDDIQALFSD*
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spliced messenger RNA

>Ggra6812.t1 ID=Ggra6812.t1|Name=Ggra6812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000056_pilon:593543..594805+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTGCTTGCGAATCTAGATTCATCGTTTTGGAAAGGTGCTCCATG
GCATCTTCGACTAACTGTTCTGCTTTTGGATGAATGTCTTGCTGGGAGCG
CTTCGTACTTTTCCACATACGTAAAGAATCTGCCGGCTGAACCCACGTCT
GTATTGTGGGCATACCGTCGTCATGGACGTTCGTCTCTTGTTTCACAACT
TTCTCCCTATCATATGATGGATTCTGCTGACTTGTATGTCCGTGCCATCA
AATCAAGATATCAATCATTTCGGAAGTCCTTACCACCTCACTTACGTTCC
CTTGTGTCGATAGAGCAATTTTGTTGGGCTTCTTCAAATGTTGTCAGCCG
AGCCTTTGGTATACCCGCAGCATCGCGATCAGAAAAGCCAGTCGGTTATG
CTTTGTTTCCAATGTTGGATATGGCAAACGGATCGGTTCATGTTCCTACC
AGAATACGATATGACAACACAATCGATTGTATTCGAATAACGACTGGTGC
TTCTTTTTCCCCGGGGGAGCAAGTCTATGTATCATATGGATCTAAATCAA
ATGACGATTTCATGTTCTTTTATGGGTTTGTTGAGGGGGATAATCCGTCA
AATACGGTCACAATATCTGACTTTCGAGAGTGGATGCTCCAACTGGCACA
CCAACAAAATTCTGGTCTATGGGATCGAAAGCTTGCCATTCTACGACGTA
TAGGACTGGCAAACAAGGACAACATATTTGCATTTCATATGGACAAGCTC
GATGACGATCTTATGACGGCTTTGAGAATCGCCATTGCTACCGCTCAAGA
GCTGGACGACTTTGAGCATAACATGCGAACGAAGCCTGCGTCTAAAAAAT
ACGTCACCATCAACTTGGAGAATGAGTTGAAAGCCTGGGACGTACTTATG
GAAAAGTGCCACAGTCTTCTTGCTGACCTTCCACAGTTCACAGAGGCAGA
CCAGGAACATCTGAACAAGATACTAGAACGTAAACCCTGTACAGCTGAGT
GGGATTTCGTGCAAGCTAGCTCTGAGGGTGAGCTGCTTTTTTGTCATGAG
CGTGGTCGGGTGTTAAGGGCCACTTTGGACAGAGTGTCGCATTTTTCGAA
AGTAAGTCAATCCGTGGGTAGAATATGCACTGTGTTGCTCCCTCCGTCTC
AACAGTTGTTGCGTGCAGACTTGTTCCAGTTTGCGTCTGAAAGTACTGGC
GCTGCAGAGATTAGAAAACTCAAGATCTCTCATGATGATATCCAAGCCCT
GTTCAGTGACTAG
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protein sequence of Ggra6812.t1

>Ggra6812.t1 ID=Ggra6812.t1|Name=Ggra6812.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=421bp
MHVLANLDSSFWKGAPWHLRLTVLLLDECLAGSASYFSTYVKNLPAEPTS
VLWAYRRHGRSSLVSQLSPYHMMDSADLYVRAIKSRYQSFRKSLPPHLRS
LVSIEQFCWASSNVVSRAFGIPAASRSEKPVGYALFPMLDMANGSVHVPT
RIRYDNTIDCIRITTGASFSPGEQVYVSYGSKSNDDFMFFYGFVEGDNPS
NTVTISDFREWMLQLAHQQNSGLWDRKLAILRRIGLANKDNIFAFHMDKL
DDDLMTALRIAIATAQELDDFEHNMRTKPASKKYVTINLENELKAWDVLM
EKCHSLLADLPQFTEADQEHLNKILERKPCTAEWDFVQASSEGELLFCHE
RGRVLRATLDRVSHFSKVSQSVGRICTVLLPPSQQLLRADLFQFASESTG
AAEIRKLKISHDDIQALFSD*
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mRNA from alignment at tig00000056_pilon:593543..594805+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6812.t1 ID=Ggra6812.t1|Name=Ggra6812.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1263bp|location=Sequence derived from alignment at tig00000056_pilon:593543..594805+ (Gracilaria gracilis GNS1m male)
ATGCACGTGCTTGCGAATCTAGATTCATCGTTTTGGAAAGGTGCTCCATG
GCATCTTCGACTAACTGTTCTGCTTTTGGATGAATGTCTTGCTGGGAGCG
CTTCGTACTTTTCCACATACGTAAAGAATCTGCCGGCTGAACCCACGTCT
GTATTGTGGGCATACCGTCGTCATGGACGTTCGTCTCTTGTTTCACAACT
TTCTCCCTATCATATGATGGATTCTGCTGACTTGTATGTCCGTGCCATCA
AATCAAGATATCAATCATTTCGGAAGTCCTTACCACCTCACTTACGTTCC
CTTGTGTCGATAGAGCAATTTTGTTGGGCTTCTTCAAATGTTGTCAGCCG
AGCCTTTGGTATACCCGCAGCATCGCGATCAGAAAAGCCAGTCGGTTATG
CTTTGTTTCCAATGTTGGATATGGCAAACGGATCGGTTCATGTTCCTACC
AGAATACGATATGACAACACAATCGATTGTATTCGAATAACGACTGGTGC
TTCTTTTTCCCCGGGGGAGCAAGTCTATGTATCATATGGATCTAAATCAA
ATGACGATTTCATGTTCTTTTATGGGTTTGTTGAGGGGGATAATCCGTCA
AATACGGTCACAATATCTGACTTTCGAGAGTGGATGCTCCAACTGGCACA
CCAACAAAATTCTGGTCTATGGGATCGAAAGCTTGCCATTCTACGACGTA
TAGGACTGGCAAACAAGGACAACATATTTGCATTTCATATGGACAAGCTC
GATGACGATCTTATGACGGCTTTGAGAATCGCCATTGCTACCGCTCAAGA
GCTGGACGACTTTGAGCATAACATGCGAACGAAGCCTGCGTCTAAAAAAT
ACGTCACCATCAACTTGGAGAATGAGTTGAAAGCCTGGGACGTACTTATG
GAAAAGTGCCACAGTCTTCTTGCTGACCTTCCACAGTTCACAGAGGCAGA
CCAGGAACATCTGAACAAGATACTAGAACGTAAACCCTGTACAGCTGAGT
GGGATTTCGTGCAAGCTAGCTCTGAGGGTGAGCTGCTTTTTTGTCATGAG
CGTGGTCGGGTGTTAAGGGCCACTTTGGACAGAGTGTCGCATTTTTCGAA
AGTAAGTCAATCCGTGGGTAGAATATGCACTGTGTTGCTCCCTCCGTCTC
AACAGTTGTTGCGTGCAGACTTGTTCCAGTTTGCGTCTGAAAGTACTGGC
GCTGCAGAGATTAGAAAACTCAAGATCTCTCATGATGATATCCAAGCCCT
GTTCAGTGACTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:593543..594805+

>Ggra6812.t1 ID=Ggra6812.t1|Name=Ggra6812.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1263bp|location=Sequence derived from alignment at tig00000056_pilon:593543..594805+ (Gracilaria gracilis GNS1m male)
ATGCACGTGCTTGCGAATCTAGATTCATCGTTTTGGAAAGGTGCTCCATG
GCATCTTCGACTAACTGTTCTGCTTTTGGATGAATGTCTTGCTGGGAGCG
CTTCGTACTTTTCCACATACGTAAAGAATCTGCCGGCTGAACCCACGTCT
GTATTGTGGGCATACCGTCGTCATGGACGTTCGTCTCTTGTTTCACAACT
TTCTCCCTATCATATGATGGATTCTGCTGACTTGTATGTCCGTGCCATCA
AATCAAGATATCAATCATTTCGGAAGTCCTTACCACCTCACTTACGTTCC
CTTGTGTCGATAGAGCAATTTTGTTGGGCTTCTTCAAATGTTGTCAGCCG
AGCCTTTGGTATACCCGCAGCATCGCGATCAGAAAAGCCAGTCGGTTATG
CTTTGTTTCCAATGTTGGATATGGCAAACGGATCGGTTCATGTTCCTACC
AGAATACGATATGACAACACAATCGATTGTATTCGAATAACGACTGGTGC
TTCTTTTTCCCCGGGGGAGCAAGTCTATGTATCATATGGATCTAAATCAA
ATGACGATTTCATGTTCTTTTATGGGTTTGTTGAGGGGGATAATCCGTCA
AATACGGTCACAATATCTGACTTTCGAGAGTGGATGCTCCAACTGGCACA
CCAACAAAATTCTGGTCTATGGGATCGAAAGCTTGCCATTCTACGACGTA
TAGGACTGGCAAACAAGGACAACATATTTGCATTTCATATGGACAAGCTC
GATGACGATCTTATGACGGCTTTGAGAATCGCCATTGCTACCGCTCAAGA
GCTGGACGACTTTGAGCATAACATGCGAACGAAGCCTGCGTCTAAAAAAT
ACGTCACCATCAACTTGGAGAATGAGTTGAAAGCCTGGGACGTACTTATG
GAAAAGTGCCACAGTCTTCTTGCTGACCTTCCACAGTTCACAGAGGCAGA
CCAGGAACATCTGAACAAGATACTAGAACGTAAACCCTGTACAGCTGAGT
GGGATTTCGTGCAAGCTAGCTCTGAGGGTGAGCTGCTTTTTTGTCATGAG
CGTGGTCGGGTGTTAAGGGCCACTTTGGACAGAGTGTCGCATTTTTCGAA
AGTAAGTCAATCCGTGGGTAGAATATGCACTGTGTTGCTCCCTCCGTCTC
AACAGTTGTTGCGTGCAGACTTGTTCCAGTTTGCGTCTGAAAGTACTGGC
GCTGCAGAGATTAGAAAACTCAAGATCTCTCATGATGATATCCAAGCCCT
GTTCAGTGACTAG
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