Ggra6809.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6809.t1
Unique NameGgra6809.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:570447..571811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706857.1
Preferred nameHIS4
PFAMsHistidinol_dh,PRA-CH,PRA-PH
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00099,RC00242,RC00463,RC01055
KEGG koko:K00013,ko:K14152
KEGG ReactionR01158,R01163,R03012,R04035,R04037
KEGG Pathwayko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG ModuleM00026
GOsGO:0000105,GO:0003674,GO:0003824,GO:0004399,GO:0004635,GO:0004636,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006547,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009532,GO:0009536,GO:0009555,GO:0009570,GO:0009628,GO:0009987,GO:0016053,GO:0016462,GO:0016491,GO:0016614,GO:0016616,GO:0016787,GO:0016810,GO:0016814,GO:0016817,GO:0016818,GO:0018130,GO:0019238,GO:0019438,GO:0019752,GO:0030145,GO:0032501,GO:0032502,GO:0034641,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0048229,GO:0048856,GO:0050896,GO:0052803,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue4.54e-184
EggNOG OGsCOG0141@1|root,KOG2697@2759|Eukaryota
EC1.1.1.23,3.5.4.19,3.6.1.31
Descriptionhistidinol dehydrogenase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6809Ggra6809Gracilaria gracilis GNS1m malegenetig00000056_pilon 570447..571811 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6809.t1.start1Ggra6809.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 570447..570449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6809.t1.CDS1Ggra6809.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 570447..571811 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6809.t1.exon1Ggra6809.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 570447..571811 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6809.t1.stop1Ggra6809.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 571809..571811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6809.t1Ggra6809.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 570447..571811 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6809.t1 ID=Ggra6809.t1|Name=Ggra6809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=455bp
MATSSARIYTSAEAQRTILKRGLIEDTTVPPHVQARIDEMFGQPTTPVQC
VQNILRSVREKGDEAVQYWTKTIDGVDISSGAEISYDTVQASLEQVPAHV
IDALRLARDRVVSYHKKQPVTSWFTNDLGGTVGQAIRPIERVGFYVPGGT
APLPSTVLMSVLPAVVAGCEQLTVVSPPDRQSGTIASVTLAACAVINELE
GVKVRVFTVGGSQAVGALAYGTATIPRVDKIVGPGNIFVAIAKKEVYGVV
GIDGIYGPTEAVVVADEHADAELVAADLLAQAEHDFMAVPILITDSNKLA
EDVQKAVDVQIEKLDRKEVAKHAMEHQGGLVVAENLDECVDLANEFATEH
VSLSVENPWDVVGKMKNAGGLFLGEGSCEVLGDYVAGPSHVMPTGGSARF
SSPLSVVDFVKIVSVVGLDGKAVREIAGAAETIARSEGLDAHANAAKLRK
HLEA*
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spliced messenger RNA

>Ggra6809.t1 ID=Ggra6809.t1|Name=Ggra6809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000056_pilon:570447..571811+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCACATCCAGCGCGCGGATCTACACCTCGGCGGAAGCGCAGCGTAC
CATTTTGAAGCGCGGTCTGATCGAGGATACTACCGTTCCGCCACACGTTC
AAGCGAGGATCGACGAGATGTTTGGGCAGCCCACCACGCCCGTGCAATGT
GTACAGAACATCCTTCGTTCGGTAAGGGAAAAGGGCGATGAGGCTGTGCA
ATATTGGACCAAGACCATTGATGGCGTGGACATTTCCTCTGGCGCAGAGA
TTTCTTATGATACAGTTCAGGCGTCGTTGGAACAGGTACCTGCTCACGTC
ATTGATGCGCTTCGCCTAGCAAGGGATCGCGTTGTGTCGTACCATAAGAA
GCAGCCTGTCACTAGCTGGTTTACAAACGACCTTGGCGGCACTGTTGGTC
AGGCTATTCGTCCCATCGAAAGAGTGGGTTTCTACGTTCCAGGCGGCACG
GCTCCATTGCCTTCGACCGTGCTCATGTCCGTGCTACCGGCGGTGGTGGC
AGGCTGCGAACAGCTGACCGTAGTATCTCCACCCGATCGTCAAAGCGGTA
CCATCGCCAGCGTGACGTTGGCGGCATGCGCAGTGATAAACGAACTGGAG
GGCGTTAAGGTGCGCGTGTTCACCGTGGGTGGCTCACAAGCTGTTGGCGC
TCTGGCGTACGGAACGGCGACAATTCCGCGTGTGGATAAGATTGTGGGAC
CGGGCAACATTTTTGTGGCGATTGCGAAGAAGGAGGTGTACGGAGTGGTG
GGTATTGATGGCATTTACGGCCCTACTGAGGCGGTGGTGGTGGCTGATGA
GCACGCGGATGCGGAGCTGGTGGCGGCCGATTTGCTTGCGCAGGCAGAAC
ATGACTTTATGGCGGTGCCTATTCTTATCACCGACTCAAACAAGTTGGCG
GAGGACGTGCAGAAGGCCGTCGATGTGCAGATTGAAAAGCTGGATCGCAA
GGAGGTGGCAAAACACGCGATGGAGCACCAGGGAGGGTTGGTGGTGGCAG
AAAACCTGGACGAATGCGTGGATCTGGCAAACGAATTCGCCACAGAGCAC
GTGTCGCTGTCGGTGGAGAACCCGTGGGACGTGGTGGGAAAGATGAAGAA
CGCCGGCGGGCTGTTCCTGGGAGAAGGCAGCTGTGAGGTTCTGGGCGATT
ACGTGGCTGGTCCGAGCCACGTGATGCCGACGGGAGGGAGCGCGAGGTTC
TCGTCGCCGCTGAGCGTGGTGGACTTTGTGAAGATCGTGAGCGTGGTGGG
TCTGGATGGCAAGGCGGTGCGGGAGATCGCCGGCGCGGCGGAGACGATTG
CGCGGTCCGAGGGGCTGGACGCGCACGCGAACGCGGCGAAGCTGCGAAAG
CACCTGGAGGCGTAA
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protein sequence of Ggra6809.t1

>Ggra6809.t1 ID=Ggra6809.t1|Name=Ggra6809.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=455bp
MATSSARIYTSAEAQRTILKRGLIEDTTVPPHVQARIDEMFGQPTTPVQC
VQNILRSVREKGDEAVQYWTKTIDGVDISSGAEISYDTVQASLEQVPAHV
IDALRLARDRVVSYHKKQPVTSWFTNDLGGTVGQAIRPIERVGFYVPGGT
APLPSTVLMSVLPAVVAGCEQLTVVSPPDRQSGTIASVTLAACAVINELE
GVKVRVFTVGGSQAVGALAYGTATIPRVDKIVGPGNIFVAIAKKEVYGVV
GIDGIYGPTEAVVVADEHADAELVAADLLAQAEHDFMAVPILITDSNKLA
EDVQKAVDVQIEKLDRKEVAKHAMEHQGGLVVAENLDECVDLANEFATEH
VSLSVENPWDVVGKMKNAGGLFLGEGSCEVLGDYVAGPSHVMPTGGSARF
SSPLSVVDFVKIVSVVGLDGKAVREIAGAAETIARSEGLDAHANAAKLRK
HLEA*
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mRNA from alignment at tig00000056_pilon:570447..571811+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6809.t1 ID=Ggra6809.t1|Name=Ggra6809.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1365bp|location=Sequence derived from alignment at tig00000056_pilon:570447..571811+ (Gracilaria gracilis GNS1m male)
ATGGCCACATCCAGCGCGCGGATCTACACCTCGGCGGAAGCGCAGCGTAC
CATTTTGAAGCGCGGTCTGATCGAGGATACTACCGTTCCGCCACACGTTC
AAGCGAGGATCGACGAGATGTTTGGGCAGCCCACCACGCCCGTGCAATGT
GTACAGAACATCCTTCGTTCGGTAAGGGAAAAGGGCGATGAGGCTGTGCA
ATATTGGACCAAGACCATTGATGGCGTGGACATTTCCTCTGGCGCAGAGA
TTTCTTATGATACAGTTCAGGCGTCGTTGGAACAGGTACCTGCTCACGTC
ATTGATGCGCTTCGCCTAGCAAGGGATCGCGTTGTGTCGTACCATAAGAA
GCAGCCTGTCACTAGCTGGTTTACAAACGACCTTGGCGGCACTGTTGGTC
AGGCTATTCGTCCCATCGAAAGAGTGGGTTTCTACGTTCCAGGCGGCACG
GCTCCATTGCCTTCGACCGTGCTCATGTCCGTGCTACCGGCGGTGGTGGC
AGGCTGCGAACAGCTGACCGTAGTATCTCCACCCGATCGTCAAAGCGGTA
CCATCGCCAGCGTGACGTTGGCGGCATGCGCAGTGATAAACGAACTGGAG
GGCGTTAAGGTGCGCGTGTTCACCGTGGGTGGCTCACAAGCTGTTGGCGC
TCTGGCGTACGGAACGGCGACAATTCCGCGTGTGGATAAGATTGTGGGAC
CGGGCAACATTTTTGTGGCGATTGCGAAGAAGGAGGTGTACGGAGTGGTG
GGTATTGATGGCATTTACGGCCCTACTGAGGCGGTGGTGGTGGCTGATGA
GCACGCGGATGCGGAGCTGGTGGCGGCCGATTTGCTTGCGCAGGCAGAAC
ATGACTTTATGGCGGTGCCTATTCTTATCACCGACTCAAACAAGTTGGCG
GAGGACGTGCAGAAGGCCGTCGATGTGCAGATTGAAAAGCTGGATCGCAA
GGAGGTGGCAAAACACGCGATGGAGCACCAGGGAGGGTTGGTGGTGGCAG
AAAACCTGGACGAATGCGTGGATCTGGCAAACGAATTCGCCACAGAGCAC
GTGTCGCTGTCGGTGGAGAACCCGTGGGACGTGGTGGGAAAGATGAAGAA
CGCCGGCGGGCTGTTCCTGGGAGAAGGCAGCTGTGAGGTTCTGGGCGATT
ACGTGGCTGGTCCGAGCCACGTGATGCCGACGGGAGGGAGCGCGAGGTTC
TCGTCGCCGCTGAGCGTGGTGGACTTTGTGAAGATCGTGAGCGTGGTGGG
TCTGGATGGCAAGGCGGTGCGGGAGATCGCCGGCGCGGCGGAGACGATTG
CGCGGTCCGAGGGGCTGGACGCGCACGCGAACGCGGCGAAGCTGCGAAAG
CACCTGGAGGCGTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:570447..571811+

>Ggra6809.t1 ID=Ggra6809.t1|Name=Ggra6809.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1365bp|location=Sequence derived from alignment at tig00000056_pilon:570447..571811+ (Gracilaria gracilis GNS1m male)
ATGGCCACATCCAGCGCGCGGATCTACACCTCGGCGGAAGCGCAGCGTAC
CATTTTGAAGCGCGGTCTGATCGAGGATACTACCGTTCCGCCACACGTTC
AAGCGAGGATCGACGAGATGTTTGGGCAGCCCACCACGCCCGTGCAATGT
GTACAGAACATCCTTCGTTCGGTAAGGGAAAAGGGCGATGAGGCTGTGCA
ATATTGGACCAAGACCATTGATGGCGTGGACATTTCCTCTGGCGCAGAGA
TTTCTTATGATACAGTTCAGGCGTCGTTGGAACAGGTACCTGCTCACGTC
ATTGATGCGCTTCGCCTAGCAAGGGATCGCGTTGTGTCGTACCATAAGAA
GCAGCCTGTCACTAGCTGGTTTACAAACGACCTTGGCGGCACTGTTGGTC
AGGCTATTCGTCCCATCGAAAGAGTGGGTTTCTACGTTCCAGGCGGCACG
GCTCCATTGCCTTCGACCGTGCTCATGTCCGTGCTACCGGCGGTGGTGGC
AGGCTGCGAACAGCTGACCGTAGTATCTCCACCCGATCGTCAAAGCGGTA
CCATCGCCAGCGTGACGTTGGCGGCATGCGCAGTGATAAACGAACTGGAG
GGCGTTAAGGTGCGCGTGTTCACCGTGGGTGGCTCACAAGCTGTTGGCGC
TCTGGCGTACGGAACGGCGACAATTCCGCGTGTGGATAAGATTGTGGGAC
CGGGCAACATTTTTGTGGCGATTGCGAAGAAGGAGGTGTACGGAGTGGTG
GGTATTGATGGCATTTACGGCCCTACTGAGGCGGTGGTGGTGGCTGATGA
GCACGCGGATGCGGAGCTGGTGGCGGCCGATTTGCTTGCGCAGGCAGAAC
ATGACTTTATGGCGGTGCCTATTCTTATCACCGACTCAAACAAGTTGGCG
GAGGACGTGCAGAAGGCCGTCGATGTGCAGATTGAAAAGCTGGATCGCAA
GGAGGTGGCAAAACACGCGATGGAGCACCAGGGAGGGTTGGTGGTGGCAG
AAAACCTGGACGAATGCGTGGATCTGGCAAACGAATTCGCCACAGAGCAC
GTGTCGCTGTCGGTGGAGAACCCGTGGGACGTGGTGGGAAAGATGAAGAA
CGCCGGCGGGCTGTTCCTGGGAGAAGGCAGCTGTGAGGTTCTGGGCGATT
ACGTGGCTGGTCCGAGCCACGTGATGCCGACGGGAGGGAGCGCGAGGTTC
TCGTCGCCGCTGAGCGTGGTGGACTTTGTGAAGATCGTGAGCGTGGTGGG
TCTGGATGGCAAGGCGGTGCGGGAGATCGCCGGCGCGGCGGAGACGATTG
CGCGGTCCGAGGGGCTGGACGCGCACGCGAACGCGGCGAAGCTGCGAAAG
CACCTGGAGGCGTAA
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