Ggra6803.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6803.t1
Unique NameGgra6803.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length400
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:553873..555072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009033031.1
PFAMsGlycos_transf_2
Max annot lvl2759|Eukaryota
Evalue2.46e-39
EggNOG OGs2EQX0@1|root,2STUC@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6803Ggra6803Gracilaria gracilis GNS1m malegenetig00000056_pilon 553873..555072 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6803.t1.stop1Ggra6803.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 553873..553875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6803.t1.CDS1Ggra6803.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 553873..555072 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6803.t1.exon1Ggra6803.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 553873..555072 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6803.t1.start1Ggra6803.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 555070..555072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6803.t1Ggra6803.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 553873..555072 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6803.t1 ID=Ggra6803.t1|Name=Ggra6803.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=400bp
MNGPMISHASRASEPSRNPRSTLLVLLFLVALRGQFYISSTFAGTRPART
SNFSQQFEENSWQICADILRDGLNDVGDASSVWLTHAYVGSNHYPMNDVS
NPSERYKCRCLIPQLHVKKQPLLTAIVQSFNHHGNIANISTALKSSSVVQ
EIVISEDGSTDGSLHDWHAALNEPHHFIIRSNNLHELRSYNRAMRMSSGD
IVVLLQDDDLLPLTDEWLKNAIKLFEALPELGVLGGYIGQLWDHNSGQGY
EYGEQISTHGGLRQGNTKPLPFLEPTTKLPFMYAECVWIAPVFIRREVLR
KAGGLELTIAKRGEPGVWQDCVLSYEAWINGYAVGAYSAPFERGVGGHGS
ATSTMKVKQRERVYERAVAYTNRKYPRRRIHDSIIARNNQTLLPRAFVK*
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spliced messenger RNA

>Ggra6803.t1 ID=Ggra6803.t1|Name=Ggra6803.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000056_pilon:553873..555072- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGCCCTATGATTTCACACGCCTCTCGTGCGTCAGAACCATCTCG
AAATCCGCGTTCAACTCTGCTGGTTCTCCTTTTTCTTGTGGCATTACGAG
GTCAGTTTTACATCTCTTCCACATTCGCTGGTACACGACCCGCACGCACA
TCCAATTTTTCCCAGCAGTTTGAGGAGAATTCATGGCAGATTTGCGCCGA
TATTTTACGAGATGGGTTGAATGATGTTGGTGACGCTTCATCGGTTTGGC
TTACTCATGCATACGTTGGATCTAATCATTATCCGATGAATGATGTTTCA
AATCCGTCAGAAAGATATAAATGTCGATGCTTGATTCCTCAACTCCATGT
TAAGAAACAACCTTTGCTTACTGCCATTGTCCAGAGTTTTAATCATCATG
GTAATATTGCCAACATTTCCACCGCTCTCAAGTCTTCCTCTGTGGTTCAG
GAGATTGTTATCAGCGAAGATGGCTCTACTGATGGGTCCCTACACGACTG
GCATGCCGCTCTTAACGAACCGCATCACTTTATCATTCGGTCAAACAATC
TTCACGAGTTGCGAAGTTATAATCGTGCAATGCGAATGTCTTCTGGTGAT
ATTGTTGTTTTGTTACAAGACGATGATTTGTTGCCTCTCACTGACGAATG
GTTGAAGAATGCTATCAAACTGTTCGAAGCGTTACCCGAGTTGGGCGTCT
TGGGGGGTTACATTGGCCAACTCTGGGACCACAATTCGGGACAAGGATAT
GAATACGGTGAACAAATCAGTACACACGGTGGGTTACGTCAAGGAAACAC
AAAGCCATTACCGTTTTTGGAACCGACAACCAAGCTCCCATTTATGTATG
CCGAATGCGTATGGATCGCACCAGTTTTCATCAGAAGAGAAGTTTTGAGA
AAAGCAGGTGGACTAGAGCTGACTATAGCGAAACGGGGAGAACCAGGTGT
CTGGCAGGATTGTGTTCTCAGCTACGAGGCATGGATCAATGGTTACGCCG
TTGGTGCTTACTCTGCACCTTTCGAACGAGGAGTTGGTGGTCATGGTTCC
GCAACTTCTACAATGAAGGTGAAGCAAAGAGAACGTGTTTATGAAAGAGC
TGTCGCATATACTAATCGAAAGTATCCTAGAAGAAGGATACATGACTCAA
TTATCGCCCGGAACAACCAAACTTTGTTACCTAGAGCGTTTGTCAAGTAG
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protein sequence of Ggra6803.t1

>Ggra6803.t1 ID=Ggra6803.t1|Name=Ggra6803.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=400bp
MNGPMISHASRASEPSRNPRSTLLVLLFLVALRGQFYISSTFAGTRPART
SNFSQQFEENSWQICADILRDGLNDVGDASSVWLTHAYVGSNHYPMNDVS
NPSERYKCRCLIPQLHVKKQPLLTAIVQSFNHHGNIANISTALKSSSVVQ
EIVISEDGSTDGSLHDWHAALNEPHHFIIRSNNLHELRSYNRAMRMSSGD
IVVLLQDDDLLPLTDEWLKNAIKLFEALPELGVLGGYIGQLWDHNSGQGY
EYGEQISTHGGLRQGNTKPLPFLEPTTKLPFMYAECVWIAPVFIRREVLR
KAGGLELTIAKRGEPGVWQDCVLSYEAWINGYAVGAYSAPFERGVGGHGS
ATSTMKVKQRERVYERAVAYTNRKYPRRRIHDSIIARNNQTLLPRAFVK*
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mRNA from alignment at tig00000056_pilon:553873..555072-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6803.t1 ID=Ggra6803.t1|Name=Ggra6803.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1200bp|location=Sequence derived from alignment at tig00000056_pilon:553873..555072- (Gracilaria gracilis GNS1m male)
ATGAACGGCCCTATGATTTCACACGCCTCTCGTGCGTCAGAACCATCTCG
AAATCCGCGTTCAACTCTGCTGGTTCTCCTTTTTCTTGTGGCATTACGAG
GTCAGTTTTACATCTCTTCCACATTCGCTGGTACACGACCCGCACGCACA
TCCAATTTTTCCCAGCAGTTTGAGGAGAATTCATGGCAGATTTGCGCCGA
TATTTTACGAGATGGGTTGAATGATGTTGGTGACGCTTCATCGGTTTGGC
TTACTCATGCATACGTTGGATCTAATCATTATCCGATGAATGATGTTTCA
AATCCGTCAGAAAGATATAAATGTCGATGCTTGATTCCTCAACTCCATGT
TAAGAAACAACCTTTGCTTACTGCCATTGTCCAGAGTTTTAATCATCATG
GTAATATTGCCAACATTTCCACCGCTCTCAAGTCTTCCTCTGTGGTTCAG
GAGATTGTTATCAGCGAAGATGGCTCTACTGATGGGTCCCTACACGACTG
GCATGCCGCTCTTAACGAACCGCATCACTTTATCATTCGGTCAAACAATC
TTCACGAGTTGCGAAGTTATAATCGTGCAATGCGAATGTCTTCTGGTGAT
ATTGTTGTTTTGTTACAAGACGATGATTTGTTGCCTCTCACTGACGAATG
GTTGAAGAATGCTATCAAACTGTTCGAAGCGTTACCCGAGTTGGGCGTCT
TGGGGGGTTACATTGGCCAACTCTGGGACCACAATTCGGGACAAGGATAT
GAATACGGTGAACAAATCAGTACACACGGTGGGTTACGTCAAGGAAACAC
AAAGCCATTACCGTTTTTGGAACCGACAACCAAGCTCCCATTTATGTATG
CCGAATGCGTATGGATCGCACCAGTTTTCATCAGAAGAGAAGTTTTGAGA
AAAGCAGGTGGACTAGAGCTGACTATAGCGAAACGGGGAGAACCAGGTGT
CTGGCAGGATTGTGTTCTCAGCTACGAGGCATGGATCAATGGTTACGCCG
TTGGTGCTTACTCTGCACCTTTCGAACGAGGAGTTGGTGGTCATGGTTCC
GCAACTTCTACAATGAAGGTGAAGCAAAGAGAACGTGTTTATGAAAGAGC
TGTCGCATATACTAATCGAAAGTATCCTAGAAGAAGGATACATGACTCAA
TTATCGCCCGGAACAACCAAACTTTGTTACCTAGAGCGTTTGTCAAGTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:553873..555072-

>Ggra6803.t1 ID=Ggra6803.t1|Name=Ggra6803.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1200bp|location=Sequence derived from alignment at tig00000056_pilon:553873..555072- (Gracilaria gracilis GNS1m male)
ATGAACGGCCCTATGATTTCACACGCCTCTCGTGCGTCAGAACCATCTCG
AAATCCGCGTTCAACTCTGCTGGTTCTCCTTTTTCTTGTGGCATTACGAG
GTCAGTTTTACATCTCTTCCACATTCGCTGGTACACGACCCGCACGCACA
TCCAATTTTTCCCAGCAGTTTGAGGAGAATTCATGGCAGATTTGCGCCGA
TATTTTACGAGATGGGTTGAATGATGTTGGTGACGCTTCATCGGTTTGGC
TTACTCATGCATACGTTGGATCTAATCATTATCCGATGAATGATGTTTCA
AATCCGTCAGAAAGATATAAATGTCGATGCTTGATTCCTCAACTCCATGT
TAAGAAACAACCTTTGCTTACTGCCATTGTCCAGAGTTTTAATCATCATG
GTAATATTGCCAACATTTCCACCGCTCTCAAGTCTTCCTCTGTGGTTCAG
GAGATTGTTATCAGCGAAGATGGCTCTACTGATGGGTCCCTACACGACTG
GCATGCCGCTCTTAACGAACCGCATCACTTTATCATTCGGTCAAACAATC
TTCACGAGTTGCGAAGTTATAATCGTGCAATGCGAATGTCTTCTGGTGAT
ATTGTTGTTTTGTTACAAGACGATGATTTGTTGCCTCTCACTGACGAATG
GTTGAAGAATGCTATCAAACTGTTCGAAGCGTTACCCGAGTTGGGCGTCT
TGGGGGGTTACATTGGCCAACTCTGGGACCACAATTCGGGACAAGGATAT
GAATACGGTGAACAAATCAGTACACACGGTGGGTTACGTCAAGGAAACAC
AAAGCCATTACCGTTTTTGGAACCGACAACCAAGCTCCCATTTATGTATG
CCGAATGCGTATGGATCGCACCAGTTTTCATCAGAAGAGAAGTTTTGAGA
AAAGCAGGTGGACTAGAGCTGACTATAGCGAAACGGGGAGAACCAGGTGT
CTGGCAGGATTGTGTTCTCAGCTACGAGGCATGGATCAATGGTTACGCCG
TTGGTGCTTACTCTGCACCTTTCGAACGAGGAGTTGGTGGTCATGGTTCC
GCAACTTCTACAATGAAGGTGAAGCAAAGAGAACGTGTTTATGAAAGAGC
TGTCGCATATACTAATCGAAAGTATCCTAGAAGAAGGATACATGACTCAA
TTATCGCCCGGAACAACCAAACTTTGTTACCTAGAGCGTTTGTCAAGTAG
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