Ggra6795.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6795.t1
Unique NameGgra6795.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length374
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:534614..535735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1192868.CAIU01000017_gene2422
Preferred nameglnD
PFAMsACT,GlnD_UR_UTase,GlnE,HD,NTP_transf_2
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K00990
KEGG Pathwayko02020,map02020
GOsGO:0006355,GO:0006464,GO:0006807,GO:0006808,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009605,GO:0009719,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0018175,GO:0018177,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0036211,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070887,GO:0071310,GO:0071417,GO:0071495,GO:0071496,GO:0071704,GO:0080090,GO:0090293,GO:1901564,GO:1901698,GO:1901699,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue6.9e-07
EggNOG OGsCOG2844@1|root,COG2844@2|Bacteria,1MV54@1224|Proteobacteria,2TSV0@28211|Alphaproteobacteria,43H8C@69277|Phyllobacteriaceae
EC2.7.7.59
DescriptionModifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
COG categoryO
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6795Ggra6795Gracilaria gracilis GNS1m malegenetig00000056_pilon 534614..535735 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6795.t1.start1Ggra6795.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 534614..534616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6795.t1.CDS1Ggra6795.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 534614..535735 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6795.t1.exon1Ggra6795.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 534614..535735 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6795.t1.stop1Ggra6795.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 535733..535735 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6795.t1Ggra6795.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 534614..535735 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6795.t1 ID=Ggra6795.t1|Name=Ggra6795.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=374bp
MAFISPIPINLRPRPAALSSSPSVTHDAPHKRCIARMTTDNGLSAQVQSP
LRTQIYGPEEDTCTYGEECNLSEDIVKESPALNNLISKYVFPMRDQNTQV
FFDNSISDDHTIMIVFAEDRHGLVLDVVSVLKALCVRVHRTASGESDALQ
FMLHRIEGELRSVQELGISLNNCVAFWITDESTGEKIFDDGCRLDQLTTC
IKLELNTPYPRPRPATEDAWHRVSVQKNRADRYTVVSVQTADRPRLLTEL
TDAFASISIDVASATINTFAERVENTFFVTKRGFKEPLSEHDIKRALKNV
AKALLKVGQREPSESLWYQVRDGTAVVIAEAIFIDEVNNRELAMFRFSQF
ETPNFRGRLPDVPYCPILLDGEE*
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spliced messenger RNA

>Ggra6795.t1 ID=Ggra6795.t1|Name=Ggra6795.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000056_pilon:534614..535735+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTCATCTCCCCAATACCGATCAATTTGCGTCCGCGCCCAGCCGC
CCTCAGTTCCTCCCCGTCCGTCACACATGATGCGCCCCACAAACGCTGCA
TCGCGCGCATGACCACTGACAACGGCCTCTCCGCGCAAGTACAGTCGCCA
CTTCGCACGCAGATATACGGCCCCGAGGAAGACACCTGTACCTACGGAGA
GGAGTGCAATCTTTCTGAGGACATCGTCAAGGAATCGCCCGCACTCAATA
ACCTCATCTCCAAGTATGTATTCCCTATGCGTGACCAGAACACCCAAGTG
TTCTTCGACAATTCCATCTCGGACGACCACACCATCATGATTGTGTTTGC
TGAAGACCGACATGGGCTTGTTCTTGATGTCGTTTCGGTCCTCAAGGCGC
TTTGCGTACGAGTTCATCGCACGGCTAGTGGTGAGAGTGATGCGCTTCAA
TTCATGCTTCATCGCATCGAGGGCGAGTTGCGTTCCGTACAGGAGCTCGG
AATTTCCCTCAACAACTGTGTTGCTTTCTGGATTACTGACGAATCCACGG
GAGAGAAGATCTTTGATGATGGTTGTCGCCTTGATCAGCTTACTACTTGT
ATCAAGCTAGAGCTGAATACCCCGTATCCACGACCTCGCCCTGCTACCGA
AGATGCCTGGCATCGTGTCTCTGTCCAGAAAAATCGCGCCGACCGCTACA
CTGTAGTATCTGTTCAGACCGCCGATCGACCGCGCCTGCTGACCGAACTA
ACCGACGCGTTTGCCTCCATCAGCATTGACGTTGCCAGCGCCACCATTAA
CACTTTTGCCGAACGTGTGGAGAACACGTTCTTCGTGACAAAGCGAGGCT
TCAAGGAGCCCTTGTCTGAGCATGACATAAAACGCGCCTTGAAAAACGTC
GCCAAGGCCCTGCTCAAAGTCGGACAGAGGGAACCATCGGAGTCATTGTG
GTATCAAGTAAGAGATGGTACAGCTGTGGTCATCGCCGAAGCTATATTCA
TCGACGAGGTCAACAACCGTGAGCTTGCCATGTTCCGCTTTTCGCAGTTT
GAAACTCCCAACTTTAGGGGCCGTCTGCCTGACGTACCATACTGCCCAAT
TCTCCTCGATGGAGAGGAATAG
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protein sequence of Ggra6795.t1

>Ggra6795.t1 ID=Ggra6795.t1|Name=Ggra6795.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=374bp
MAFISPIPINLRPRPAALSSSPSVTHDAPHKRCIARMTTDNGLSAQVQSP
LRTQIYGPEEDTCTYGEECNLSEDIVKESPALNNLISKYVFPMRDQNTQV
FFDNSISDDHTIMIVFAEDRHGLVLDVVSVLKALCVRVHRTASGESDALQ
FMLHRIEGELRSVQELGISLNNCVAFWITDESTGEKIFDDGCRLDQLTTC
IKLELNTPYPRPRPATEDAWHRVSVQKNRADRYTVVSVQTADRPRLLTEL
TDAFASISIDVASATINTFAERVENTFFVTKRGFKEPLSEHDIKRALKNV
AKALLKVGQREPSESLWYQVRDGTAVVIAEAIFIDEVNNRELAMFRFSQF
ETPNFRGRLPDVPYCPILLDGEE*
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mRNA from alignment at tig00000056_pilon:534614..535735+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6795.t1 ID=Ggra6795.t1|Name=Ggra6795.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000056_pilon:534614..535735+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCATCTCCCCAATACCGATCAATTTGCGTCCGCGCCCAGCCGC
CCTCAGTTCCTCCCCGTCCGTCACACATGATGCGCCCCACAAACGCTGCA
TCGCGCGCATGACCACTGACAACGGCCTCTCCGCGCAAGTACAGTCGCCA
CTTCGCACGCAGATATACGGCCCCGAGGAAGACACCTGTACCTACGGAGA
GGAGTGCAATCTTTCTGAGGACATCGTCAAGGAATCGCCCGCACTCAATA
ACCTCATCTCCAAGTATGTATTCCCTATGCGTGACCAGAACACCCAAGTG
TTCTTCGACAATTCCATCTCGGACGACCACACCATCATGATTGTGTTTGC
TGAAGACCGACATGGGCTTGTTCTTGATGTCGTTTCGGTCCTCAAGGCGC
TTTGCGTACGAGTTCATCGCACGGCTAGTGGTGAGAGTGATGCGCTTCAA
TTCATGCTTCATCGCATCGAGGGCGAGTTGCGTTCCGTACAGGAGCTCGG
AATTTCCCTCAACAACTGTGTTGCTTTCTGGATTACTGACGAATCCACGG
GAGAGAAGATCTTTGATGATGGTTGTCGCCTTGATCAGCTTACTACTTGT
ATCAAGCTAGAGCTGAATACCCCGTATCCACGACCTCGCCCTGCTACCGA
AGATGCCTGGCATCGTGTCTCTGTCCAGAAAAATCGCGCCGACCGCTACA
CTGTAGTATCTGTTCAGACCGCCGATCGACCGCGCCTGCTGACCGAACTA
ACCGACGCGTTTGCCTCCATCAGCATTGACGTTGCCAGCGCCACCATTAA
CACTTTTGCCGAACGTGTGGAGAACACGTTCTTCGTGACAAAGCGAGGCT
TCAAGGAGCCCTTGTCTGAGCATGACATAAAACGCGCCTTGAAAAACGTC
GCCAAGGCCCTGCTCAAAGTCGGACAGAGGGAACCATCGGAGTCATTGTG
GTATCAAGTAAGAGATGGTACAGCTGTGGTCATCGCCGAAGCTATATTCA
TCGACGAGGTCAACAACCGTGAGCTTGCCATGTTCCGCTTTTCGCAGTTT
GAAACTCCCAACTTTAGGGGCCGTCTGCCTGACGTACCATACTGCCCAAT
TCTCCTCGATGGAGAGGAATAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:534614..535735+

>Ggra6795.t1 ID=Ggra6795.t1|Name=Ggra6795.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00000056_pilon:534614..535735+ (Gracilaria gracilis GNS1m male)
ATGGCTTTCATCTCCCCAATACCGATCAATTTGCGTCCGCGCCCAGCCGC
CCTCAGTTCCTCCCCGTCCGTCACACATGATGCGCCCCACAAACGCTGCA
TCGCGCGCATGACCACTGACAACGGCCTCTCCGCGCAAGTACAGTCGCCA
CTTCGCACGCAGATATACGGCCCCGAGGAAGACACCTGTACCTACGGAGA
GGAGTGCAATCTTTCTGAGGACATCGTCAAGGAATCGCCCGCACTCAATA
ACCTCATCTCCAAGTATGTATTCCCTATGCGTGACCAGAACACCCAAGTG
TTCTTCGACAATTCCATCTCGGACGACCACACCATCATGATTGTGTTTGC
TGAAGACCGACATGGGCTTGTTCTTGATGTCGTTTCGGTCCTCAAGGCGC
TTTGCGTACGAGTTCATCGCACGGCTAGTGGTGAGAGTGATGCGCTTCAA
TTCATGCTTCATCGCATCGAGGGCGAGTTGCGTTCCGTACAGGAGCTCGG
AATTTCCCTCAACAACTGTGTTGCTTTCTGGATTACTGACGAATCCACGG
GAGAGAAGATCTTTGATGATGGTTGTCGCCTTGATCAGCTTACTACTTGT
ATCAAGCTAGAGCTGAATACCCCGTATCCACGACCTCGCCCTGCTACCGA
AGATGCCTGGCATCGTGTCTCTGTCCAGAAAAATCGCGCCGACCGCTACA
CTGTAGTATCTGTTCAGACCGCCGATCGACCGCGCCTGCTGACCGAACTA
ACCGACGCGTTTGCCTCCATCAGCATTGACGTTGCCAGCGCCACCATTAA
CACTTTTGCCGAACGTGTGGAGAACACGTTCTTCGTGACAAAGCGAGGCT
TCAAGGAGCCCTTGTCTGAGCATGACATAAAACGCGCCTTGAAAAACGTC
GCCAAGGCCCTGCTCAAAGTCGGACAGAGGGAACCATCGGAGTCATTGTG
GTATCAAGTAAGAGATGGTACAGCTGTGGTCATCGCCGAAGCTATATTCA
TCGACGAGGTCAACAACCGTGAGCTTGCCATGTTCCGCTTTTCGCAGTTT
GAAACTCCCAACTTTAGGGGCCGTCTGCCTGACGTACCATACTGCCCAAT
TCTCCTCGATGGAGAGGAATAG
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