Ggra6793.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6793.t1
Unique NameGgra6793.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:530753..531579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6793Ggra6793Gracilaria gracilis GNS1m malegenetig00000056_pilon 530753..531579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6793.t1Ggra6793.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 530753..531579 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6793.t1.stop1Ggra6793.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 530753..530755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6793.t1.CDS1Ggra6793.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 530753..531009 -
Ggra6793.t1.CDS2Ggra6793.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 531136..531268 -
Ggra6793.t1.CDS3Ggra6793.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 531370..531579 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6793.t1.exon1Ggra6793.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 530753..531009 -
Ggra6793.t1.exon2Ggra6793.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 531136..531268 -
Ggra6793.t1.exon3Ggra6793.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 531370..531579 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6793.t1.intron1Ggra6793.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 531010..531135 -
Ggra6793.t1.intron2Ggra6793.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 531269..531369 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6793.t1.start1Ggra6793.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 531577..531579 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6793.t1 ID=Ggra6793.t1|Name=Ggra6793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=200bp
MAFSSSCSNDSFSSAGSDSPLAHAASVSSSPSAHAAFSLSLSLADPTIPS
SVKGAPAHLRRAIRKRQNSESAKRSRLRRKQASLMFHEQFELQCRRIHTL
EARVQALHDMLECRPLVASCGGMRLGADDDEDDDDDDDVDDVDDDVVVEV
RERDGTVPAWAAPDFDEAAACALQRSDSLLDDVFVLDALSAWFPRSPLP*
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spliced messenger RNA

>Ggra6793.t1 ID=Ggra6793.t1|Name=Ggra6793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp|location=Sequence derived from alignment at tig00000056_pilon:530753..531579- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCTCTTCCAGCTGCAGCAACGACTCCTTCAGTTCGGCCGGCTC
CGACTCGCCCTTGGCGCACGCCGCTTCCGTGTCGTCGTCGCCGTCGGCTC
ACGCCGCCTTCTCGCTCTCGCTCTCGCTCGCCGACCCCACCATCCCCTCC
TCCGTCAAGGGCGCGCCCGCGCACCTCAGACGCGCCATCCGCAAGCGCCA
AAACTCAGAGTCCGCAAAGCGCTCGCGACTGCGACGGAAGCAGGCGTCGC
TCATGTTCCACGAGCAGTTTGAGCTGCAGTGCCGGCGCATCCACACGCTG
GAGGCGCGCGTGCAGGCGCTGCACGACATGCTGGAGTGTCGGCCGCTGGT
GGCGTCGTGCGGCGGCATGCGCCTTGGCGCTGACGACGATGAGGACGACG
ACGACGACGACGACGTCGACGACGTCGACGACGACGTCGTGGTTGAGGTG
CGCGAGCGCGATGGTACCGTGCCCGCGTGGGCGGCGCCGGATTTCGACGA
GGCGGCGGCATGCGCGTTGCAGCGAAGCGACTCTTTGCTTGACGACGTGT
TCGTGTTAGACGCGCTGTCGGCGTGGTTCCCGCGCTCGCCGCTGCCGTGA
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protein sequence of Ggra6793.t1

>Ggra6793.t1 ID=Ggra6793.t1|Name=Ggra6793.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=200bp
MAFSSSCSNDSFSSAGSDSPLAHAASVSSSPSAHAAFSLSLSLADPTIPS
SVKGAPAHLRRAIRKRQNSESAKRSRLRRKQASLMFHEQFELQCRRIHTL
EARVQALHDMLECRPLVASCGGMRLGADDDEDDDDDDDVDDVDDDVVVEV
RERDGTVPAWAAPDFDEAAACALQRSDSLLDDVFVLDALSAWFPRSPLP*
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mRNA from alignment at tig00000056_pilon:530753..531579-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6793.t1 ID=Ggra6793.t1|Name=Ggra6793.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=827bp|location=Sequence derived from alignment at tig00000056_pilon:530753..531579- (Gracilaria gracilis GNS1m male)
ATGGCCTTCTCTTCCAGCTGCAGCAACGACTCCTTCAGTTCGGCCGGCTC
CGACTCGCCCTTGGCGCACGCCGCTTCCGTGTCGTCGTCGCCGTCGGCTC
ACGCCGCCTTCTCGCTCTCGCTCTCGCTCGCCGACCCCACCATCCCCTCC
TCCGTCAAGGGCGCGCCCGCGCACCTCAGACGCGCCATCCGCAAGCGCCA
AAACTCAGAGGTACGTGTGGCGCATGCGCCCGCACGCACGCGCGCCCCCA
CCAGCCGCCAGCCGCCCGTACTGACAGCACTCTTTGTTTCTTCGCGCGCG
CCAATTCGCAGTCCGCAAAGCGCTCGCGACTGCGACGGAAGCAGGCGTCG
CTCATGTTCCACGAGCAGTTTGAGCTGCAGTGCCGGCGCATCCACACGCT
GGAGGCGCGCGTGCAGGCGCTGCACGACATGCTGGAGTGTCGGCGTAAGC
AGCGCGCCGGCGCGCACGCGCCCTCGGCGCAAGCGCTGGCGCCAATTGCG
CGCCCTGCGCGCGCCGGCACGTGGTGGTTGCATCAGGAGGTGAGCGCGGC
GAGCACATTGGACAGCTCAGCGCTGGTGGCGTCGTGCGGCGGCATGCGCC
TTGGCGCTGACGACGATGAGGACGACGACGACGACGACGACGTCGACGAC
GTCGACGACGACGTCGTGGTTGAGGTGCGCGAGCGCGATGGTACCGTGCC
CGCGTGGGCGGCGCCGGATTTCGACGAGGCGGCGGCATGCGCGTTGCAGC
GAAGCGACTCTTTGCTTGACGACGTGTTCGTGTTAGACGCGCTGTCGGCG
TGGTTCCCGCGCTCGCCGCTGCCGTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:530753..531579-

>Ggra6793.t1 ID=Ggra6793.t1|Name=Ggra6793.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=600bp|location=Sequence derived from alignment at tig00000056_pilon:530753..531579- (Gracilaria gracilis GNS1m male)
ATGGCCTTCTCTTCCAGCTGCAGCAACGACTCCTTCAGTTCGGCCGGCTC
CGACTCGCCCTTGGCGCACGCCGCTTCCGTGTCGTCGTCGCCGTCGGCTC
ACGCCGCCTTCTCGCTCTCGCTCTCGCTCGCCGACCCCACCATCCCCTCC
TCCGTCAAGGGCGCGCCCGCGCACCTCAGACGCGCCATCCGCAAGCGCCA
AAACTCAGAGTCCGCAAAGCGCTCGCGACTGCGACGGAAGCAGGCGTCGC
TCATGTTCCACGAGCAGTTTGAGCTGCAGTGCCGGCGCATCCACACGCTG
GAGGCGCGCGTGCAGGCGCTGCACGACATGCTGGAGTGTCGGCCGCTGGT
GGCGTCGTGCGGCGGCATGCGCCTTGGCGCTGACGACGATGAGGACGACG
ACGACGACGACGACGTCGACGACGTCGACGACGACGTCGTGGTTGAGGTG
CGCGAGCGCGATGGTACCGTGCCCGCGTGGGCGGCGCCGGATTTCGACGA
GGCGGCGGCATGCGCGTTGCAGCGAAGCGACTCTTTGCTTGACGACGTGT
TCGTGTTAGACGCGCTGTCGGCGTGGTTCCCGCGCTCGCCGCTGCCGTGA
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