Ggra6782.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6782.t1
Unique NameGgra6782.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:496173..497543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28072.Nos7524_3957
Preferred namectpA
PFAMsPDZ,PDZ_2,Peptidase_S41
Max annot lvl1117|Cyanobacteria
KEGG koko:K03797
GOsGO:0003674,GO:0003824,GO:0004175,GO:0005575,GO:0005623,GO:0006508,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0016787,GO:0019538,GO:0023052,GO:0030288,GO:0030313,GO:0031975,GO:0042597,GO:0043170,GO:0044238,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070011,GO:0071704,GO:0140096,GO:1901564
Evalue2.71e-100
EggNOG OGsCOG0793@1|root,COG0793@2|Bacteria,1G1XG@1117|Cyanobacteria,1HKBA@1161|Nostocales
EC3.4.21.102
DescriptionBelongs to the peptidase S41A family
COG categoryM
BRITEko00000,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6782Ggra6782Gracilaria gracilis GNS1m malegenetig00000056_pilon 496173..497543 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6782.t1.stop1Ggra6782.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 496173..496175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6782.t1.CDS1Ggra6782.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 496173..497543 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6782.t1.exon1Ggra6782.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 496173..497543 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6782.t1.start1Ggra6782.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 497541..497543 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6782.t1Ggra6782.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 496173..497543 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6782.t1 ID=Ggra6782.t1|Name=Ggra6782.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=457bp
MPKRQRQCSHSPVREWSSIRTETGLPFPMFVSPTILFSNRLRPCLVSQKG
QRTAHSLQMSAAKVKTQIIAAVFSGLLLLPPAGIALTEPQKLVAEAWRIV
DQSFVDRTFNHKDWFQTRMRAVKKSYGSMEDAYMAIRDMLSLLDDPYTRF
LTPPEYISLTSSTTGEVAGVGVEMFPARVDNNLKVTSPIDDSPAQRAGVR
PADIITLIDGEDTSSLTPDEAAARIRGRPGSSVTLTVVHDGGTGKEESFN
LTRENLKLKSVKSSMPKPRELYIKIKQFSSTTADDLKAALGKYENKEIDR
IILDLRNNSGGYFPGGVDVAGLFLKAGNPIVFVMDKSGVPDEIDNAYDGL
FTDVPMCVLVNSGTASASEILAGALKDNGRAKLVGEQTFGKGVVQTVSQL
SNGSGIAVTVARYETPNHVNINKIGIAPDFKKDCSLDADVHTCLPPDFTN
VEAVSQ*
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spliced messenger RNA

>Ggra6782.t1 ID=Ggra6782.t1|Name=Ggra6782.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000056_pilon:496173..497543- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTAAGCGCCAACGTCAATGTTCTCACTCCCCAGTCCGCGAATGGAG
TTCCATCCGAACTGAAACTGGGCTTCCTTTTCCGATGTTTGTATCGCCGA
CAATTTTGTTTTCAAACCGACTTCGTCCATGTCTGGTGAGCCAAAAAGGA
CAAAGGACTGCACATTCCTTGCAAATGAGTGCAGCGAAGGTTAAGACTCA
AATAATCGCTGCAGTGTTCTCTGGCCTTCTTCTTCTTCCCCCAGCCGGAA
TTGCATTAACTGAGCCTCAGAAACTTGTCGCGGAAGCATGGCGAATTGTG
GATCAGTCATTTGTTGACCGAACTTTTAATCATAAGGACTGGTTTCAAAC
TCGAATGCGTGCTGTAAAGAAATCATACGGTTCCATGGAAGACGCATATA
TGGCTATAAGGGACATGTTGTCTTTGTTGGACGATCCATATACTCGCTTC
TTGACGCCACCGGAATACATTTCGCTTACATCTTCTACAACTGGAGAAGT
TGCTGGTGTAGGTGTCGAAATGTTTCCGGCCAGAGTCGATAATAATTTGA
AAGTTACTTCTCCAATAGATGATTCGCCCGCACAACGAGCTGGAGTGCGC
CCAGCTGACATAATAACATTGATTGATGGCGAAGATACTAGCAGTCTTAC
ACCTGATGAGGCTGCAGCACGAATTCGAGGGAGGCCGGGCTCATCTGTCA
CATTGACTGTTGTACATGATGGTGGAACTGGAAAAGAGGAGTCGTTCAAT
TTGACGCGCGAGAATTTGAAGCTGAAGAGCGTCAAGTCATCAATGCCAAA
GCCAAGGGAGCTTTACATAAAGATCAAACAATTCAGCTCCACCACGGCCG
ATGATTTGAAAGCAGCCCTGGGGAAGTACGAGAATAAAGAAATTGATCGA
ATCATCCTTGACTTGCGAAACAACTCAGGAGGCTACTTTCCGGGCGGGGT
CGACGTCGCAGGGCTTTTCTTGAAAGCTGGAAATCCCATTGTTTTCGTGA
TGGACAAGAGTGGCGTACCAGACGAGATTGACAACGCTTACGACGGACTA
TTTACGGATGTACCCATGTGCGTATTAGTGAACAGTGGAACAGCAAGTGC
GAGTGAAATTCTAGCGGGGGCTTTGAAAGACAATGGACGCGCGAAGCTAG
TTGGAGAGCAGACATTTGGAAAGGGTGTCGTACAAACGGTTTCACAACTA
AGTAATGGGAGTGGCATAGCCGTCACTGTTGCTCGATATGAGACTCCGAA
TCACGTCAACATCAACAAGATTGGGATAGCCCCAGATTTCAAGAAAGATT
GTAGTCTAGATGCAGACGTTCACACATGCCTGCCACCCGACTTTACTAAT
GTTGAAGCAGTTTCCCAATGA
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protein sequence of Ggra6782.t1

>Ggra6782.t1 ID=Ggra6782.t1|Name=Ggra6782.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=457bp
MPKRQRQCSHSPVREWSSIRTETGLPFPMFVSPTILFSNRLRPCLVSQKG
QRTAHSLQMSAAKVKTQIIAAVFSGLLLLPPAGIALTEPQKLVAEAWRIV
DQSFVDRTFNHKDWFQTRMRAVKKSYGSMEDAYMAIRDMLSLLDDPYTRF
LTPPEYISLTSSTTGEVAGVGVEMFPARVDNNLKVTSPIDDSPAQRAGVR
PADIITLIDGEDTSSLTPDEAAARIRGRPGSSVTLTVVHDGGTGKEESFN
LTRENLKLKSVKSSMPKPRELYIKIKQFSSTTADDLKAALGKYENKEIDR
IILDLRNNSGGYFPGGVDVAGLFLKAGNPIVFVMDKSGVPDEIDNAYDGL
FTDVPMCVLVNSGTASASEILAGALKDNGRAKLVGEQTFGKGVVQTVSQL
SNGSGIAVTVARYETPNHVNINKIGIAPDFKKDCSLDADVHTCLPPDFTN
VEAVSQ*
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mRNA from alignment at tig00000056_pilon:496173..497543-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6782.t1 ID=Ggra6782.t1|Name=Ggra6782.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000056_pilon:496173..497543- (Gracilaria gracilis GNS1m male)
ATGCCTAAGCGCCAACGTCAATGTTCTCACTCCCCAGTCCGCGAATGGAG
TTCCATCCGAACTGAAACTGGGCTTCCTTTTCCGATGTTTGTATCGCCGA
CAATTTTGTTTTCAAACCGACTTCGTCCATGTCTGGTGAGCCAAAAAGGA
CAAAGGACTGCACATTCCTTGCAAATGAGTGCAGCGAAGGTTAAGACTCA
AATAATCGCTGCAGTGTTCTCTGGCCTTCTTCTTCTTCCCCCAGCCGGAA
TTGCATTAACTGAGCCTCAGAAACTTGTCGCGGAAGCATGGCGAATTGTG
GATCAGTCATTTGTTGACCGAACTTTTAATCATAAGGACTGGTTTCAAAC
TCGAATGCGTGCTGTAAAGAAATCATACGGTTCCATGGAAGACGCATATA
TGGCTATAAGGGACATGTTGTCTTTGTTGGACGATCCATATACTCGCTTC
TTGACGCCACCGGAATACATTTCGCTTACATCTTCTACAACTGGAGAAGT
TGCTGGTGTAGGTGTCGAAATGTTTCCGGCCAGAGTCGATAATAATTTGA
AAGTTACTTCTCCAATAGATGATTCGCCCGCACAACGAGCTGGAGTGCGC
CCAGCTGACATAATAACATTGATTGATGGCGAAGATACTAGCAGTCTTAC
ACCTGATGAGGCTGCAGCACGAATTCGAGGGAGGCCGGGCTCATCTGTCA
CATTGACTGTTGTACATGATGGTGGAACTGGAAAAGAGGAGTCGTTCAAT
TTGACGCGCGAGAATTTGAAGCTGAAGAGCGTCAAGTCATCAATGCCAAA
GCCAAGGGAGCTTTACATAAAGATCAAACAATTCAGCTCCACCACGGCCG
ATGATTTGAAAGCAGCCCTGGGGAAGTACGAGAATAAAGAAATTGATCGA
ATCATCCTTGACTTGCGAAACAACTCAGGAGGCTACTTTCCGGGCGGGGT
CGACGTCGCAGGGCTTTTCTTGAAAGCTGGAAATCCCATTGTTTTCGTGA
TGGACAAGAGTGGCGTACCAGACGAGATTGACAACGCTTACGACGGACTA
TTTACGGATGTACCCATGTGCGTATTAGTGAACAGTGGAACAGCAAGTGC
GAGTGAAATTCTAGCGGGGGCTTTGAAAGACAATGGACGCGCGAAGCTAG
TTGGAGAGCAGACATTTGGAAAGGGTGTCGTACAAACGGTTTCACAACTA
AGTAATGGGAGTGGCATAGCCGTCACTGTTGCTCGATATGAGACTCCGAA
TCACGTCAACATCAACAAGATTGGGATAGCCCCAGATTTCAAGAAAGATT
GTAGTCTAGATGCAGACGTTCACACATGCCTGCCACCCGACTTTACTAAT
GTTGAAGCAGTTTCCCAATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:496173..497543-

>Ggra6782.t1 ID=Ggra6782.t1|Name=Ggra6782.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1371bp|location=Sequence derived from alignment at tig00000056_pilon:496173..497543- (Gracilaria gracilis GNS1m male)
ATGCCTAAGCGCCAACGTCAATGTTCTCACTCCCCAGTCCGCGAATGGAG
TTCCATCCGAACTGAAACTGGGCTTCCTTTTCCGATGTTTGTATCGCCGA
CAATTTTGTTTTCAAACCGACTTCGTCCATGTCTGGTGAGCCAAAAAGGA
CAAAGGACTGCACATTCCTTGCAAATGAGTGCAGCGAAGGTTAAGACTCA
AATAATCGCTGCAGTGTTCTCTGGCCTTCTTCTTCTTCCCCCAGCCGGAA
TTGCATTAACTGAGCCTCAGAAACTTGTCGCGGAAGCATGGCGAATTGTG
GATCAGTCATTTGTTGACCGAACTTTTAATCATAAGGACTGGTTTCAAAC
TCGAATGCGTGCTGTAAAGAAATCATACGGTTCCATGGAAGACGCATATA
TGGCTATAAGGGACATGTTGTCTTTGTTGGACGATCCATATACTCGCTTC
TTGACGCCACCGGAATACATTTCGCTTACATCTTCTACAACTGGAGAAGT
TGCTGGTGTAGGTGTCGAAATGTTTCCGGCCAGAGTCGATAATAATTTGA
AAGTTACTTCTCCAATAGATGATTCGCCCGCACAACGAGCTGGAGTGCGC
CCAGCTGACATAATAACATTGATTGATGGCGAAGATACTAGCAGTCTTAC
ACCTGATGAGGCTGCAGCACGAATTCGAGGGAGGCCGGGCTCATCTGTCA
CATTGACTGTTGTACATGATGGTGGAACTGGAAAAGAGGAGTCGTTCAAT
TTGACGCGCGAGAATTTGAAGCTGAAGAGCGTCAAGTCATCAATGCCAAA
GCCAAGGGAGCTTTACATAAAGATCAAACAATTCAGCTCCACCACGGCCG
ATGATTTGAAAGCAGCCCTGGGGAAGTACGAGAATAAAGAAATTGATCGA
ATCATCCTTGACTTGCGAAACAACTCAGGAGGCTACTTTCCGGGCGGGGT
CGACGTCGCAGGGCTTTTCTTGAAAGCTGGAAATCCCATTGTTTTCGTGA
TGGACAAGAGTGGCGTACCAGACGAGATTGACAACGCTTACGACGGACTA
TTTACGGATGTACCCATGTGCGTATTAGTGAACAGTGGAACAGCAAGTGC
GAGTGAAATTCTAGCGGGGGCTTTGAAAGACAATGGACGCGCGAAGCTAG
TTGGAGAGCAGACATTTGGAAAGGGTGTCGTACAAACGGTTTCACAACTA
AGTAATGGGAGTGGCATAGCCGTCACTGTTGCTCGATATGAGACTCCGAA
TCACGTCAACATCAACAAGATTGGGATAGCCCCAGATTTCAAGAAAGATT
GTAGTCTAGATGCAGACGTTCACACATGCCTGCCACCCGACTTTACTAAT
GTTGAAGCAGTTTCCCAATGA
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