Ggra6781.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6781.t1
Unique NameGgra6781.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:494667..495161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704661.1
Preferred nameUBC17
PFAMsUQ_con
Max annot lvl2759|Eukaryota
KEGG rclassRC00064,RC00141
KEGG koko:K01446,ko:K10688,ko:K13963,ko:K19589,ko:K20182
KEGG ReactionR04112
KEGG Pathwayko04120,ko04138,ko05146,map04120,map04138,map05146
GOsGO:0000209,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009719,GO:0009725,GO:0009739,GO:0009987,GO:0010033,GO:0010498,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0032446,GO:0033993,GO:0036211,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0061630,GO:0061659,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901700
Evalue1.05e-74
EggNOG OGsCOG5078@1|root,KOG0427@2759|Eukaryota
EC2.1.1.297,2.3.2.25
Descriptionprotein polyubiquitination
COG categoryO
BRITEko00000,ko00001,ko01000,ko03012,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6781Ggra6781Gracilaria gracilis GNS1m malegenetig00000056_pilon 494667..495161 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6781.t1.start1Ggra6781.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 494667..494669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6781.t1.CDS1Ggra6781.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 494667..495161 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6781.t1.exon1Ggra6781.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 494667..495161 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6781.t1.stop1Ggra6781.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 495159..495161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6781.t1Ggra6781.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 494667..495161 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6781.t1 ID=Ggra6781.t1|Name=Ggra6781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=165bp
MNMGGPSSHRRKELTRVAQRRLTRELAEWSVKSPPVPGMSVSETDRVDEW
LVTVTGAAGSVYENEKYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNG
HICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQGR
SPKQTRWMFHDDHV*
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spliced messenger RNA

>Ggra6781.t1 ID=Ggra6781.t1|Name=Ggra6781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000056_pilon:494667..495161+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATGGGCGGCCCTTCATCACATCGTCGGAAAGAACTTACGCGCGT
CGCGCAGCGTCGCCTCACGCGTGAGTTGGCTGAGTGGTCCGTCAAGTCGC
CGCCTGTTCCGGGTATGTCGGTATCCGAGACTGATCGAGTGGACGAGTGG
CTCGTCACCGTCACCGGCGCTGCCGGTAGCGTGTACGAAAATGAGAAGTA
CACATTGCGTTTCGTTTTCCCTTCAGACTATCCCATGGAAGCCCCGGAAG
TCGTATTTTTACAGCCTACGCCGCGTCATCCTCATGTATACTCCAATGGC
CATATTTGTCTCAACGTGCTCTACGACGGCTGGAGTCCTGCGCTCACCGT
CACCTCCGTTTGTCTCAGTATCGTCAGCATGTTGAGCAGCGCCACAAAGA
AAGGTGTTCCTCCCGATAACGACACCTACATTCGTAACTGTCAAGGAAGG
TCACCCAAACAAACGCGGTGGATGTTCCACGATGACCATGTTTGA
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protein sequence of Ggra6781.t1

>Ggra6781.t1 ID=Ggra6781.t1|Name=Ggra6781.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=165bp
MNMGGPSSHRRKELTRVAQRRLTRELAEWSVKSPPVPGMSVSETDRVDEW
LVTVTGAAGSVYENEKYTLRFVFPSDYPMEAPEVVFLQPTPRHPHVYSNG
HICLNVLYDGWSPALTVTSVCLSIVSMLSSATKKGVPPDNDTYIRNCQGR
SPKQTRWMFHDDHV*
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mRNA from alignment at tig00000056_pilon:494667..495161+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6781.t1 ID=Ggra6781.t1|Name=Ggra6781.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp|location=Sequence derived from alignment at tig00000056_pilon:494667..495161+ (Gracilaria gracilis GNS1m male)
ATGAACATGGGCGGCCCTTCATCACATCGTCGGAAAGAACTTACGCGCGT
CGCGCAGCGTCGCCTCACGCGTGAGTTGGCTGAGTGGTCCGTCAAGTCGC
CGCCTGTTCCGGGTATGTCGGTATCCGAGACTGATCGAGTGGACGAGTGG
CTCGTCACCGTCACCGGCGCTGCCGGTAGCGTGTACGAAAATGAGAAGTA
CACATTGCGTTTCGTTTTCCCTTCAGACTATCCCATGGAAGCCCCGGAAG
TCGTATTTTTACAGCCTACGCCGCGTCATCCTCATGTATACTCCAATGGC
CATATTTGTCTCAACGTGCTCTACGACGGCTGGAGTCCTGCGCTCACCGT
CACCTCCGTTTGTCTCAGTATCGTCAGCATGTTGAGCAGCGCCACAAAGA
AAGGTGTTCCTCCCGATAACGACACCTACATTCGTAACTGTCAAGGAAGG
TCACCCAAACAAACGCGGTGGATGTTCCACGATGACCATGTTTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:494667..495161+

>Ggra6781.t1 ID=Ggra6781.t1|Name=Ggra6781.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=495bp|location=Sequence derived from alignment at tig00000056_pilon:494667..495161+ (Gracilaria gracilis GNS1m male)
ATGAACATGGGCGGCCCTTCATCACATCGTCGGAAAGAACTTACGCGCGT
CGCGCAGCGTCGCCTCACGCGTGAGTTGGCTGAGTGGTCCGTCAAGTCGC
CGCCTGTTCCGGGTATGTCGGTATCCGAGACTGATCGAGTGGACGAGTGG
CTCGTCACCGTCACCGGCGCTGCCGGTAGCGTGTACGAAAATGAGAAGTA
CACATTGCGTTTCGTTTTCCCTTCAGACTATCCCATGGAAGCCCCGGAAG
TCGTATTTTTACAGCCTACGCCGCGTCATCCTCATGTATACTCCAATGGC
CATATTTGTCTCAACGTGCTCTACGACGGCTGGAGTCCTGCGCTCACCGT
CACCTCCGTTTGTCTCAGTATCGTCAGCATGTTGAGCAGCGCCACAAAGA
AAGGTGTTCCTCCCGATAACGACACCTACATTCGTAACTGTCAAGGAAGG
TCACCCAAACAAACGCGGTGGATGTTCCACGATGACCATGTTTGA
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