Ggra6774.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6774.t1
Unique NameGgra6774.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:477555..479183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6500.XP_005092570.1
Preferred namequa-1
PFAMsAIG1,HH_signal,Hint
Max annot lvl2759|Eukaryota
GOsGO:0002119,GO:0002164,GO:0005575,GO:0005576,GO:0007275,GO:0008150,GO:0009791,GO:0018996,GO:0031012,GO:0032501,GO:0032502,GO:0042303,GO:0044421,GO:0048856,GO:0060102,GO:0062023
Evalue1.89e-14
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6774Ggra6774Gracilaria gracilis GNS1m malegenetig00000056_pilon 477555..479183 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6774.t1.stop1Ggra6774.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 477555..477557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6774.t1.CDS1Ggra6774.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 477555..479183 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6774.t1.exon1Ggra6774.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 477555..479183 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6774.t1.start1Ggra6774.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 479181..479183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6774.t1Ggra6774.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 477555..479183 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6774.t1 ID=Ggra6774.t1|Name=Ggra6774.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp
MLWFALLCAALCLPATLGASLRVSERAAVQNRASVRSDVLGVYSLHPASK
DVARPFNCPEKFTTVTFEFQVTNSPSTLPAPPAFNILIPHINTLLDDRQC
ESSGNVIATTSDHPFVQMASSPLEVITYWAGGGTAKNATWVTEELVDAVS
RQSFVIGYDFTERSCRGIRLRPGTAFLWFQPAWDIPLGDLQLEGKNKYLL
LTFKNQIRAGCIYVAEVVGGEGDFSVGPVSDPSIEAALGNPDSLTVPPTV
SVPPASDSNSEQPPPSEDEQDGEEGDDGEELVQDDDQTDPPSDASDQTDS
SSTSTGEQDSSDSSQPSDSDDADSGGNVFGGATEQNGNSDSASGGALQPD
SEGEGPACFSGSSMVQLQHGSKVQMRNLKIGHRVRVRDKHFSDVFFFSHR
LEQEDVLHDFVRIGTEHEHVLTLSEGHYVYVNGRMCAAGAASIGDSLKTA
DGGWTKIVSIERVKERGLYAPHTFDGDIVVDGIQVSTYTTAVHPRFAHHV
LLAPVRLLYRLGVRSVWDRVIDGRVRDLYRFLPRGPQRFERV*
back to top

spliced messenger RNA

>Ggra6774.t1 ID=Ggra6774.t1|Name=Ggra6774.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000056_pilon:477555..479183- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTGGTTCGCGCTTTTGTGCGCGGCGTTATGCCTCCCCGCAACTCT
CGGCGCTTCGTTGCGTGTGTCGGAACGCGCCGCCGTGCAGAACAGGGCCT
CCGTGCGCTCCGATGTTCTGGGAGTCTATTCGCTGCATCCGGCTTCGAAG
GACGTCGCTAGGCCGTTTAACTGTCCCGAGAAGTTCACCACCGTCACCTT
TGAGTTCCAGGTCACTAATTCCCCCTCAACTTTGCCGGCGCCTCCCGCCT
TCAACATACTCATCCCGCACATTAACACGCTGTTAGATGATCGACAATGT
GAGTCATCGGGCAATGTCATCGCTACTACTAGCGATCACCCCTTCGTTCA
GATGGCCTCCAGTCCGCTCGAGGTCATCACGTACTGGGCCGGTGGCGGAA
CCGCAAAGAACGCCACCTGGGTCACCGAAGAGCTTGTCGACGCTGTGTCC
CGACAATCCTTTGTTATCGGTTACGATTTCACCGAACGGAGCTGTAGAGG
AATTCGCTTGCGACCTGGCACGGCGTTTTTGTGGTTTCAGCCGGCATGGG
ATATCCCGCTTGGAGACCTTCAGCTAGAGGGCAAGAACAAGTACTTGTTA
CTCACTTTCAAGAATCAAATACGTGCCGGATGCATATACGTTGCTGAAGT
TGTGGGCGGTGAAGGAGACTTTTCCGTTGGACCCGTTTCAGACCCTAGCA
TCGAGGCTGCGCTTGGCAATCCTGATTCGCTAACCGTCCCTCCTACTGTT
AGTGTTCCCCCCGCGTCTGACAGCAATTCAGAACAACCGCCTCCGAGCGA
GGATGAACAGGATGGTGAAGAAGGAGACGACGGCGAAGAACTTGTTCAAG
ATGACGATCAGACTGACCCGCCTTCTGATGCTTCGGATCAAACCGACAGC
TCTTCGACGTCTACGGGTGAACAAGATTCATCGGACTCTTCTCAACCCTC
TGATTCAGACGATGCTGATTCTGGCGGCAATGTTTTCGGTGGCGCCACGG
AGCAGAATGGCAACAGCGACAGTGCTTCTGGCGGTGCTTTGCAACCAGAT
TCAGAAGGTGAGGGGCCTGCATGTTTTTCGGGTTCGTCCATGGTTCAGCT
TCAACATGGATCAAAGGTTCAAATGCGCAATTTGAAGATTGGGCATCGTG
TGCGAGTGCGAGATAAACACTTTTCCGACGTGTTTTTCTTCTCCCATCGT
TTAGAGCAGGAAGATGTGTTACATGACTTTGTCAGAATTGGAACTGAACA
TGAGCATGTCCTTACTTTGTCTGAAGGACACTATGTTTATGTGAATGGTC
GTATGTGTGCCGCGGGTGCTGCTTCGATTGGAGATAGCTTAAAAACGGCT
GATGGTGGTTGGACGAAAATTGTGAGCATTGAACGTGTTAAGGAACGAGG
GTTGTACGCACCTCATACATTTGATGGAGATATTGTTGTTGATGGGATTC
AGGTGTCAACGTATACAACTGCTGTGCATCCTCGATTTGCGCATCATGTC
TTGCTTGCACCTGTAAGACTTCTGTATCGTTTAGGCGTTCGTTCTGTCTG
GGACCGGGTTATCGATGGACGTGTCAGAGATTTGTATCGTTTTCTGCCGC
GTGGTCCGCAACGGTTCGAGAGGGTTTGA
back to top

protein sequence of Ggra6774.t1

>Ggra6774.t1 ID=Ggra6774.t1|Name=Ggra6774.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=543bp
MLWFALLCAALCLPATLGASLRVSERAAVQNRASVRSDVLGVYSLHPASK
DVARPFNCPEKFTTVTFEFQVTNSPSTLPAPPAFNILIPHINTLLDDRQC
ESSGNVIATTSDHPFVQMASSPLEVITYWAGGGTAKNATWVTEELVDAVS
RQSFVIGYDFTERSCRGIRLRPGTAFLWFQPAWDIPLGDLQLEGKNKYLL
LTFKNQIRAGCIYVAEVVGGEGDFSVGPVSDPSIEAALGNPDSLTVPPTV
SVPPASDSNSEQPPPSEDEQDGEEGDDGEELVQDDDQTDPPSDASDQTDS
SSTSTGEQDSSDSSQPSDSDDADSGGNVFGGATEQNGNSDSASGGALQPD
SEGEGPACFSGSSMVQLQHGSKVQMRNLKIGHRVRVRDKHFSDVFFFSHR
LEQEDVLHDFVRIGTEHEHVLTLSEGHYVYVNGRMCAAGAASIGDSLKTA
DGGWTKIVSIERVKERGLYAPHTFDGDIVVDGIQVSTYTTAVHPRFAHHV
LLAPVRLLYRLGVRSVWDRVIDGRVRDLYRFLPRGPQRFERV*
back to top

mRNA from alignment at tig00000056_pilon:477555..479183-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6774.t1 ID=Ggra6774.t1|Name=Ggra6774.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000056_pilon:477555..479183- (Gracilaria gracilis GNS1m male)
ATGCTTTGGTTCGCGCTTTTGTGCGCGGCGTTATGCCTCCCCGCAACTCT
CGGCGCTTCGTTGCGTGTGTCGGAACGCGCCGCCGTGCAGAACAGGGCCT
CCGTGCGCTCCGATGTTCTGGGAGTCTATTCGCTGCATCCGGCTTCGAAG
GACGTCGCTAGGCCGTTTAACTGTCCCGAGAAGTTCACCACCGTCACCTT
TGAGTTCCAGGTCACTAATTCCCCCTCAACTTTGCCGGCGCCTCCCGCCT
TCAACATACTCATCCCGCACATTAACACGCTGTTAGATGATCGACAATGT
GAGTCATCGGGCAATGTCATCGCTACTACTAGCGATCACCCCTTCGTTCA
GATGGCCTCCAGTCCGCTCGAGGTCATCACGTACTGGGCCGGTGGCGGAA
CCGCAAAGAACGCCACCTGGGTCACCGAAGAGCTTGTCGACGCTGTGTCC
CGACAATCCTTTGTTATCGGTTACGATTTCACCGAACGGAGCTGTAGAGG
AATTCGCTTGCGACCTGGCACGGCGTTTTTGTGGTTTCAGCCGGCATGGG
ATATCCCGCTTGGAGACCTTCAGCTAGAGGGCAAGAACAAGTACTTGTTA
CTCACTTTCAAGAATCAAATACGTGCCGGATGCATATACGTTGCTGAAGT
TGTGGGCGGTGAAGGAGACTTTTCCGTTGGACCCGTTTCAGACCCTAGCA
TCGAGGCTGCGCTTGGCAATCCTGATTCGCTAACCGTCCCTCCTACTGTT
AGTGTTCCCCCCGCGTCTGACAGCAATTCAGAACAACCGCCTCCGAGCGA
GGATGAACAGGATGGTGAAGAAGGAGACGACGGCGAAGAACTTGTTCAAG
ATGACGATCAGACTGACCCGCCTTCTGATGCTTCGGATCAAACCGACAGC
TCTTCGACGTCTACGGGTGAACAAGATTCATCGGACTCTTCTCAACCCTC
TGATTCAGACGATGCTGATTCTGGCGGCAATGTTTTCGGTGGCGCCACGG
AGCAGAATGGCAACAGCGACAGTGCTTCTGGCGGTGCTTTGCAACCAGAT
TCAGAAGGTGAGGGGCCTGCATGTTTTTCGGGTTCGTCCATGGTTCAGCT
TCAACATGGATCAAAGGTTCAAATGCGCAATTTGAAGATTGGGCATCGTG
TGCGAGTGCGAGATAAACACTTTTCCGACGTGTTTTTCTTCTCCCATCGT
TTAGAGCAGGAAGATGTGTTACATGACTTTGTCAGAATTGGAACTGAACA
TGAGCATGTCCTTACTTTGTCTGAAGGACACTATGTTTATGTGAATGGTC
GTATGTGTGCCGCGGGTGCTGCTTCGATTGGAGATAGCTTAAAAACGGCT
GATGGTGGTTGGACGAAAATTGTGAGCATTGAACGTGTTAAGGAACGAGG
GTTGTACGCACCTCATACATTTGATGGAGATATTGTTGTTGATGGGATTC
AGGTGTCAACGTATACAACTGCTGTGCATCCTCGATTTGCGCATCATGTC
TTGCTTGCACCTGTAAGACTTCTGTATCGTTTAGGCGTTCGTTCTGTCTG
GGACCGGGTTATCGATGGACGTGTCAGAGATTTGTATCGTTTTCTGCCGC
GTGGTCCGCAACGGTTCGAGAGGGTTTGA
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:477555..479183-

>Ggra6774.t1 ID=Ggra6774.t1|Name=Ggra6774.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1629bp|location=Sequence derived from alignment at tig00000056_pilon:477555..479183- (Gracilaria gracilis GNS1m male)
ATGCTTTGGTTCGCGCTTTTGTGCGCGGCGTTATGCCTCCCCGCAACTCT
CGGCGCTTCGTTGCGTGTGTCGGAACGCGCCGCCGTGCAGAACAGGGCCT
CCGTGCGCTCCGATGTTCTGGGAGTCTATTCGCTGCATCCGGCTTCGAAG
GACGTCGCTAGGCCGTTTAACTGTCCCGAGAAGTTCACCACCGTCACCTT
TGAGTTCCAGGTCACTAATTCCCCCTCAACTTTGCCGGCGCCTCCCGCCT
TCAACATACTCATCCCGCACATTAACACGCTGTTAGATGATCGACAATGT
GAGTCATCGGGCAATGTCATCGCTACTACTAGCGATCACCCCTTCGTTCA
GATGGCCTCCAGTCCGCTCGAGGTCATCACGTACTGGGCCGGTGGCGGAA
CCGCAAAGAACGCCACCTGGGTCACCGAAGAGCTTGTCGACGCTGTGTCC
CGACAATCCTTTGTTATCGGTTACGATTTCACCGAACGGAGCTGTAGAGG
AATTCGCTTGCGACCTGGCACGGCGTTTTTGTGGTTTCAGCCGGCATGGG
ATATCCCGCTTGGAGACCTTCAGCTAGAGGGCAAGAACAAGTACTTGTTA
CTCACTTTCAAGAATCAAATACGTGCCGGATGCATATACGTTGCTGAAGT
TGTGGGCGGTGAAGGAGACTTTTCCGTTGGACCCGTTTCAGACCCTAGCA
TCGAGGCTGCGCTTGGCAATCCTGATTCGCTAACCGTCCCTCCTACTGTT
AGTGTTCCCCCCGCGTCTGACAGCAATTCAGAACAACCGCCTCCGAGCGA
GGATGAACAGGATGGTGAAGAAGGAGACGACGGCGAAGAACTTGTTCAAG
ATGACGATCAGACTGACCCGCCTTCTGATGCTTCGGATCAAACCGACAGC
TCTTCGACGTCTACGGGTGAACAAGATTCATCGGACTCTTCTCAACCCTC
TGATTCAGACGATGCTGATTCTGGCGGCAATGTTTTCGGTGGCGCCACGG
AGCAGAATGGCAACAGCGACAGTGCTTCTGGCGGTGCTTTGCAACCAGAT
TCAGAAGGTGAGGGGCCTGCATGTTTTTCGGGTTCGTCCATGGTTCAGCT
TCAACATGGATCAAAGGTTCAAATGCGCAATTTGAAGATTGGGCATCGTG
TGCGAGTGCGAGATAAACACTTTTCCGACGTGTTTTTCTTCTCCCATCGT
TTAGAGCAGGAAGATGTGTTACATGACTTTGTCAGAATTGGAACTGAACA
TGAGCATGTCCTTACTTTGTCTGAAGGACACTATGTTTATGTGAATGGTC
GTATGTGTGCCGCGGGTGCTGCTTCGATTGGAGATAGCTTAAAAACGGCT
GATGGTGGTTGGACGAAAATTGTGAGCATTGAACGTGTTAAGGAACGAGG
GTTGTACGCACCTCATACATTTGATGGAGATATTGTTGTTGATGGGATTC
AGGTGTCAACGTATACAACTGCTGTGCATCCTCGATTTGCGCATCATGTC
TTGCTTGCACCTGTAAGACTTCTGTATCGTTTAGGCGTTCGTTCTGTCTG
GGACCGGGTTATCGATGGACGTGTCAGAGATTTGTATCGTTTTCTGCCGC
GTGGTCCGCAACGGTTCGAGAGGGTTTGA
back to top