Ggra6772.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6772.t1
Unique Name	Ggra6772.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	591

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:471970..473742 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6772	Ggra6772	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 471970..473742 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6772.t1.stop1	Ggra6772.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 471970..471972 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6772.t1.CDS1	Ggra6772.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 471970..473742 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6772.t1.exon1	Ggra6772.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 471970..473742 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6772.t1.start1	Ggra6772.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 473740..473742 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6772.t1	Ggra6772.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 471970..473742 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:471970..473742-
coding sequence from alignment at tig00000056_pilon:471970..473742-

mRNA sequence

>Ggra6772.t1 ID=Ggra6772.t1|Name=Ggra6772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp
MSSPTEAQSQVPFRFNYCIDIEILNIVLAKEIYLIPFKKAHAAFDMIRQR
MIDTNALCTVPLHCHAPTGTSTPPTALQMLQHYQHLIVNHPSREVPPAEE
IFSRAQFRKRSRLLDQVFSRIIGSIYVRGVGRPPRKYAFDVQLDLMLLEH
VLQYKAHLRPRSELHPTFSVIRQGIIIKYGFHSDQTIPAPSTVHEGAPTV
SQLSVRYQYLITGHVNSSGKEGADQRRGPESARKRSHLLDIIVRDIVTQA
LSGSEILRKSRRSSLEAPENDVELLAPRPKRRKSYPSVENVIAEPAPRLG
VIPTPKALPSRQVVLRDATGTAYTVAGNAKEPRTTSHPEPEDEVVWRRKM
EERRMALEEDHQKKNWKFAVLQEQRLKVEQQRVKLQEKTLEMMQKEHKVL
VQTLSGLATVFSKVAEQMGIVDPNTSSNDKDQLVAHAVPESCDPVATNIA
VATKKPATNDATPMDIELTPKEGSTATDGHPAEEKPAVEDKETEKGESPA
KGKTTMGKDSAVKNEPPIQGGASKEGCNEEKQSRDNKESRAGKLVKTGAA
KQVKTRKRARAAPVPIVSAGSGLAKSSGMAGASAAVSNGQ*

spliced messenger RNA

>Ggra6772.t1 ID=Ggra6772.t1|Name=Ggra6772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000056_pilon:471970..473742- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCTCCTACCGAAGCTCAATCACAAGTTCCGTTTCGATTTAACTA
CTGTATCGACATTGAGATACTTAATATCGTACTGGCCAAGGAAATCTACC
TCATTCCGTTCAAAAAAGCCCATGCCGCGTTCGATATGATCCGTCAGCGT
ATGATCGATACGAACGCTCTTTGCACAGTTCCGCTTCATTGTCATGCTCC
GACTGGCACCAGCACTCCACCGACCGCCTTGCAAATGCTGCAACACTACC
AGCACCTCATCGTAAACCACCCGAGTCGTGAAGTACCCCCCGCTGAAGAA
ATCTTTTCCCGTGCCCAGTTCCGAAAGCGTTCTCGACTTCTCGACCAGGT
CTTCTCCCGTATCATTGGCTCTATTTATGTCCGTGGTGTTGGCAGACCGC
CCAGAAAGTATGCTTTCGACGTTCAATTGGACCTAATGCTGCTTGAGCAT
GTATTACAATATAAGGCACATCTCCGTCCTCGCTCGGAACTCCATCCCAC
CTTTTCTGTCATCCGACAGGGCATCATCATCAAGTATGGCTTTCATTCAG
ATCAAACCATCCCCGCGCCTTCTACTGTCCACGAGGGGGCTCCCACGGTA
TCACAGCTCTCCGTTCGCTATCAATATCTAATAACCGGTCATGTTAATTC
AAGTGGGAAGGAAGGGGCCGACCAACGCCGTGGCCCTGAGTCCGCCCGCA
AACGTAGCCATCTGCTGGATATCATTGTGCGTGATATTGTCACCCAAGCT
CTTTCGGGCTCTGAAATCCTTAGGAAAAGCCGTCGTTCTTCACTGGAAGC
CCCGGAGAACGACGTAGAACTTCTTGCTCCCCGCCCGAAGAGGAGGAAGT
CTTATCCAAGTGTGGAGAATGTTATTGCAGAACCCGCACCACGACTGGGA
GTGATCCCTACTCCAAAGGCCTTGCCATCTCGACAGGTCGTTCTCAGAGA
TGCGACTGGAACTGCATATACGGTGGCTGGTAACGCAAAAGAACCACGAA
CAACCTCTCACCCTGAACCCGAAGATGAGGTTGTATGGCGCAGAAAAATG
GAGGAAAGGCGAATGGCTCTCGAAGAAGATCATCAGAAAAAGAATTGGAA
GTTTGCTGTTCTTCAAGAACAGCGATTGAAGGTCGAGCAACAGCGCGTTA
AGCTTCAGGAGAAAACCTTAGAGATGATGCAGAAAGAACACAAGGTACTG
GTCCAAACGCTTTCTGGTCTCGCTACGGTATTTTCAAAAGTCGCAGAGCA
GATGGGCATCGTCGATCCGAATACCAGTTCCAATGATAAGGACCAACTTG
TGGCACATGCGGTGCCTGAGAGTTGCGATCCAGTTGCGACTAACATTGCA
GTTGCTACTAAGAAGCCAGCCACAAATGATGCGACACCCATGGACATAGA
GCTAACTCCGAAGGAAGGGTCTACCGCGACTGACGGGCATCCCGCAGAAG
AGAAGCCAGCCGTTGAGGACAAGGAAACTGAGAAAGGTGAATCTCCTGCG
AAGGGTAAAACAACTATGGGAAAGGATTCAGCAGTAAAGAATGAACCACC
GATACAAGGTGGAGCTTCCAAGGAAGGCTGCAATGAAGAAAAGCAATCTA
GGGATAACAAGGAAAGTCGAGCTGGAAAACTTGTCAAAACGGGCGCTGCT
AAGCAAGTTAAAACCCGGAAGAGAGCAAGAGCAGCTCCGGTTCCGATTGT
TTCAGCTGGCTCAGGTTTGGCCAAAAGTTCAGGAATGGCAGGTGCTTCAG
CTGCTGTGTCCAACGGTCAATGA

protein sequence of Ggra6772.t1

>Ggra6772.t1 ID=Ggra6772.t1|Name=Ggra6772.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=591bp
MSSPTEAQSQVPFRFNYCIDIEILNIVLAKEIYLIPFKKAHAAFDMIRQR
MIDTNALCTVPLHCHAPTGTSTPPTALQMLQHYQHLIVNHPSREVPPAEE
IFSRAQFRKRSRLLDQVFSRIIGSIYVRGVGRPPRKYAFDVQLDLMLLEH
VLQYKAHLRPRSELHPTFSVIRQGIIIKYGFHSDQTIPAPSTVHEGAPTV
SQLSVRYQYLITGHVNSSGKEGADQRRGPESARKRSHLLDIIVRDIVTQA
LSGSEILRKSRRSSLEAPENDVELLAPRPKRRKSYPSVENVIAEPAPRLG
VIPTPKALPSRQVVLRDATGTAYTVAGNAKEPRTTSHPEPEDEVVWRRKM
EERRMALEEDHQKKNWKFAVLQEQRLKVEQQRVKLQEKTLEMMQKEHKVL
VQTLSGLATVFSKVAEQMGIVDPNTSSNDKDQLVAHAVPESCDPVATNIA
VATKKPATNDATPMDIELTPKEGSTATDGHPAEEKPAVEDKETEKGESPA
KGKTTMGKDSAVKNEPPIQGGASKEGCNEEKQSRDNKESRAGKLVKTGAA
KQVKTRKRARAAPVPIVSAGSGLAKSSGMAGASAAVSNGQ*

mRNA from alignment at tig00000056_pilon:471970..473742-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6772.t1 ID=Ggra6772.t1|Name=Ggra6772.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1773bp|location=Sequence derived from alignment at tig00000056_pilon:471970..473742- (Gracilaria gracilis GNS1m male)
ATGTCCTCTCCTACCGAAGCTCAATCACAAGTTCCGTTTCGATTTAACTA
CTGTATCGACATTGAGATACTTAATATCGTACTGGCCAAGGAAATCTACC
TCATTCCGTTCAAAAAAGCCCATGCCGCGTTCGATATGATCCGTCAGCGT
ATGATCGATACGAACGCTCTTTGCACAGTTCCGCTTCATTGTCATGCTCC
GACTGGCACCAGCACTCCACCGACCGCCTTGCAAATGCTGCAACACTACC
AGCACCTCATCGTAAACCACCCGAGTCGTGAAGTACCCCCCGCTGAAGAA
ATCTTTTCCCGTGCCCAGTTCCGAAAGCGTTCTCGACTTCTCGACCAGGT
CTTCTCCCGTATCATTGGCTCTATTTATGTCCGTGGTGTTGGCAGACCGC
CCAGAAAGTATGCTTTCGACGTTCAATTGGACCTAATGCTGCTTGAGCAT
GTATTACAATATAAGGCACATCTCCGTCCTCGCTCGGAACTCCATCCCAC
CTTTTCTGTCATCCGACAGGGCATCATCATCAAGTATGGCTTTCATTCAG
ATCAAACCATCCCCGCGCCTTCTACTGTCCACGAGGGGGCTCCCACGGTA
TCACAGCTCTCCGTTCGCTATCAATATCTAATAACCGGTCATGTTAATTC
AAGTGGGAAGGAAGGGGCCGACCAACGCCGTGGCCCTGAGTCCGCCCGCA
AACGTAGCCATCTGCTGGATATCATTGTGCGTGATATTGTCACCCAAGCT
CTTTCGGGCTCTGAAATCCTTAGGAAAAGCCGTCGTTCTTCACTGGAAGC
CCCGGAGAACGACGTAGAACTTCTTGCTCCCCGCCCGAAGAGGAGGAAGT
CTTATCCAAGTGTGGAGAATGTTATTGCAGAACCCGCACCACGACTGGGA
GTGATCCCTACTCCAAAGGCCTTGCCATCTCGACAGGTCGTTCTCAGAGA
TGCGACTGGAACTGCATATACGGTGGCTGGTAACGCAAAAGAACCACGAA
CAACCTCTCACCCTGAACCCGAAGATGAGGTTGTATGGCGCAGAAAAATG
GAGGAAAGGCGAATGGCTCTCGAAGAAGATCATCAGAAAAAGAATTGGAA
GTTTGCTGTTCTTCAAGAACAGCGATTGAAGGTCGAGCAACAGCGCGTTA
AGCTTCAGGAGAAAACCTTAGAGATGATGCAGAAAGAACACAAGGTACTG
GTCCAAACGCTTTCTGGTCTCGCTACGGTATTTTCAAAAGTCGCAGAGCA
GATGGGCATCGTCGATCCGAATACCAGTTCCAATGATAAGGACCAACTTG
TGGCACATGCGGTGCCTGAGAGTTGCGATCCAGTTGCGACTAACATTGCA
GTTGCTACTAAGAAGCCAGCCACAAATGATGCGACACCCATGGACATAGA
GCTAACTCCGAAGGAAGGGTCTACCGCGACTGACGGGCATCCCGCAGAAG
AGAAGCCAGCCGTTGAGGACAAGGAAACTGAGAAAGGTGAATCTCCTGCG
AAGGGTAAAACAACTATGGGAAAGGATTCAGCAGTAAAGAATGAACCACC
GATACAAGGTGGAGCTTCCAAGGAAGGCTGCAATGAAGAAAAGCAATCTA
GGGATAACAAGGAAAGTCGAGCTGGAAAACTTGTCAAAACGGGCGCTGCT
AAGCAAGTTAAAACCCGGAAGAGAGCAAGAGCAGCTCCGGTTCCGATTGT
TTCAGCTGGCTCAGGTTTGGCCAAAAGTTCAGGAATGGCAGGTGCTTCAG
CTGCTGTGTCCAACGGTCAATGA

Coding sequence (CDS) from alignment at tig00000056_pilon:471970..473742-

>Ggra6772.t1 ID=Ggra6772.t1|Name=Ggra6772.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1773bp|location=Sequence derived from alignment at tig00000056_pilon:471970..473742- (Gracilaria gracilis GNS1m male)
ATGTCCTCTCCTACCGAAGCTCAATCACAAGTTCCGTTTCGATTTAACTA
CTGTATCGACATTGAGATACTTAATATCGTACTGGCCAAGGAAATCTACC
TCATTCCGTTCAAAAAAGCCCATGCCGCGTTCGATATGATCCGTCAGCGT
ATGATCGATACGAACGCTCTTTGCACAGTTCCGCTTCATTGTCATGCTCC
GACTGGCACCAGCACTCCACCGACCGCCTTGCAAATGCTGCAACACTACC
AGCACCTCATCGTAAACCACCCGAGTCGTGAAGTACCCCCCGCTGAAGAA
ATCTTTTCCCGTGCCCAGTTCCGAAAGCGTTCTCGACTTCTCGACCAGGT
CTTCTCCCGTATCATTGGCTCTATTTATGTCCGTGGTGTTGGCAGACCGC
CCAGAAAGTATGCTTTCGACGTTCAATTGGACCTAATGCTGCTTGAGCAT
GTATTACAATATAAGGCACATCTCCGTCCTCGCTCGGAACTCCATCCCAC
CTTTTCTGTCATCCGACAGGGCATCATCATCAAGTATGGCTTTCATTCAG
ATCAAACCATCCCCGCGCCTTCTACTGTCCACGAGGGGGCTCCCACGGTA
TCACAGCTCTCCGTTCGCTATCAATATCTAATAACCGGTCATGTTAATTC
AAGTGGGAAGGAAGGGGCCGACCAACGCCGTGGCCCTGAGTCCGCCCGCA
AACGTAGCCATCTGCTGGATATCATTGTGCGTGATATTGTCACCCAAGCT
CTTTCGGGCTCTGAAATCCTTAGGAAAAGCCGTCGTTCTTCACTGGAAGC
CCCGGAGAACGACGTAGAACTTCTTGCTCCCCGCCCGAAGAGGAGGAAGT
CTTATCCAAGTGTGGAGAATGTTATTGCAGAACCCGCACCACGACTGGGA
GTGATCCCTACTCCAAAGGCCTTGCCATCTCGACAGGTCGTTCTCAGAGA
TGCGACTGGAACTGCATATACGGTGGCTGGTAACGCAAAAGAACCACGAA
CAACCTCTCACCCTGAACCCGAAGATGAGGTTGTATGGCGCAGAAAAATG
GAGGAAAGGCGAATGGCTCTCGAAGAAGATCATCAGAAAAAGAATTGGAA
GTTTGCTGTTCTTCAAGAACAGCGATTGAAGGTCGAGCAACAGCGCGTTA
AGCTTCAGGAGAAAACCTTAGAGATGATGCAGAAAGAACACAAGGTACTG
GTCCAAACGCTTTCTGGTCTCGCTACGGTATTTTCAAAAGTCGCAGAGCA
GATGGGCATCGTCGATCCGAATACCAGTTCCAATGATAAGGACCAACTTG
TGGCACATGCGGTGCCTGAGAGTTGCGATCCAGTTGCGACTAACATTGCA
GTTGCTACTAAGAAGCCAGCCACAAATGATGCGACACCCATGGACATAGA
GCTAACTCCGAAGGAAGGGTCTACCGCGACTGACGGGCATCCCGCAGAAG
AGAAGCCAGCCGTTGAGGACAAGGAAACTGAGAAAGGTGAATCTCCTGCG
AAGGGTAAAACAACTATGGGAAAGGATTCAGCAGTAAAGAATGAACCACC
GATACAAGGTGGAGCTTCCAAGGAAGGCTGCAATGAAGAAAAGCAATCTA
GGGATAACAAGGAAAGTCGAGCTGGAAAACTTGTCAAAACGGGCGCTGCT
AAGCAAGTTAAAACCCGGAAGAGAGCAAGAGCAGCTCCGGTTCCGATTGT
TTCAGCTGGCTCAGGTTTGGCCAAAAGTTCAGGAATGGCAGGTGCTTCAG
CTGCTGTGTCCAACGGTCAATGA