Ggra6771.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6771.t1
Unique NameGgra6771.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:469915..470685 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_09680T0
PFAMsDSPc
Max annot lvl2759|Eukaryota
Evalue2.66e-39
EggNOG OGsCOG2453@1|root,2S79E@2759|Eukaryota
Descriptionprotein tyrosine/serine/threonine phosphatase activity
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6771Ggra6771Gracilaria gracilis GNS1m malegenetig00000056_pilon 469915..470685 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6771.t1.start1Ggra6771.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 469915..469917 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6771.t1.CDS1Ggra6771.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 469915..470685 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6771.t1.exon1Ggra6771.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 469915..470685 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6771.t1.stop1Ggra6771.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 470683..470685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6771.t1Ggra6771.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 469915..470685 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6771.t1 ID=Ggra6771.t1|Name=Ggra6771.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=257bp
MAAYASSFRLFAGNTRSVREGSVIVGSDSHLCKPKKLRRKSTIVGQHLFK
QSIAKGFPQPKSIDSEAGLWQYNTLAACLREMSENSFNFSRVSDRDELAF
GSARPGFPSKEVTAEELEPWVRFMKAKGVKRVLSLLGDDEKEYYKFDIDQ
EMTSAFGEGKYTRTSVFAPNSMDVIISALDAAHKAEEPIVIHCSGGEGRA
AIGMCVWLIHVYGISPEEAAQEIQKETGRTPGTVRRTSAQKVAHLIAAGT
MTGFKK*
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spliced messenger RNA

>Ggra6771.t1 ID=Ggra6771.t1|Name=Ggra6771.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000056_pilon:469915..470685+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGTACGCCTCATCATTTCGTTTATTTGCAGGCAATACGAGATC
GGTCAGAGAAGGTAGCGTTATCGTAGGCAGCGATAGTCACTTGTGTAAAC
CCAAGAAGTTGCGGCGGAAATCGACAATTGTCGGTCAACATTTGTTCAAG
CAGTCCATAGCCAAAGGCTTTCCCCAGCCAAAGTCCATCGATTCTGAAGC
AGGTCTGTGGCAGTATAACACTTTGGCAGCCTGTTTGAGAGAAATGTCAG
AGAACAGCTTCAATTTTTCTCGCGTGTCAGATCGCGACGAGTTGGCGTTC
GGGTCTGCACGGCCTGGGTTTCCATCTAAAGAAGTAACTGCGGAAGAACT
GGAGCCATGGGTGAGGTTTATGAAAGCCAAGGGTGTGAAGCGTGTCCTGA
GCCTTCTCGGGGACGATGAAAAAGAGTACTACAAATTCGACATTGACCAG
GAGATGACATCTGCTTTCGGTGAAGGAAAATACACTCGGACTTCTGTGTT
TGCTCCGAATTCCATGGATGTCATAATCTCTGCCTTAGATGCTGCGCACA
AAGCTGAAGAACCAATTGTCATTCACTGTTCAGGAGGAGAAGGCCGTGCA
GCAATTGGTATGTGCGTGTGGTTGATACATGTGTATGGGATTTCGCCGGA
GGAAGCCGCTCAAGAGATTCAAAAGGAAACAGGCCGCACCCCTGGAACAG
TTCGAAGAACATCTGCTCAGAAAGTTGCCCACCTTATTGCCGCGGGTACC
ATGACTGGATTCAAAAAGTAG
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protein sequence of Ggra6771.t1

>Ggra6771.t1 ID=Ggra6771.t1|Name=Ggra6771.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
MAAYASSFRLFAGNTRSVREGSVIVGSDSHLCKPKKLRRKSTIVGQHLFK
QSIAKGFPQPKSIDSEAGLWQYNTLAACLREMSENSFNFSRVSDRDELAF
GSARPGFPSKEVTAEELEPWVRFMKAKGVKRVLSLLGDDEKEYYKFDIDQ
EMTSAFGEGKYTRTSVFAPNSMDVIISALDAAHKAEEPIVIHCSGGEGRA
AIGMCVWLIHVYGISPEEAAQEIQKETGRTPGTVRRTSAQKVAHLIAAGT
MTGFKK*
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mRNA from alignment at tig00000056_pilon:469915..470685+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6771.t1 ID=Ggra6771.t1|Name=Ggra6771.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000056_pilon:469915..470685+ (Gracilaria gracilis GNS1m male)
ATGGCCGCGTACGCCTCATCATTTCGTTTATTTGCAGGCAATACGAGATC
GGTCAGAGAAGGTAGCGTTATCGTAGGCAGCGATAGTCACTTGTGTAAAC
CCAAGAAGTTGCGGCGGAAATCGACAATTGTCGGTCAACATTTGTTCAAG
CAGTCCATAGCCAAAGGCTTTCCCCAGCCAAAGTCCATCGATTCTGAAGC
AGGTCTGTGGCAGTATAACACTTTGGCAGCCTGTTTGAGAGAAATGTCAG
AGAACAGCTTCAATTTTTCTCGCGTGTCAGATCGCGACGAGTTGGCGTTC
GGGTCTGCACGGCCTGGGTTTCCATCTAAAGAAGTAACTGCGGAAGAACT
GGAGCCATGGGTGAGGTTTATGAAAGCCAAGGGTGTGAAGCGTGTCCTGA
GCCTTCTCGGGGACGATGAAAAAGAGTACTACAAATTCGACATTGACCAG
GAGATGACATCTGCTTTCGGTGAAGGAAAATACACTCGGACTTCTGTGTT
TGCTCCGAATTCCATGGATGTCATAATCTCTGCCTTAGATGCTGCGCACA
AAGCTGAAGAACCAATTGTCATTCACTGTTCAGGAGGAGAAGGCCGTGCA
GCAATTGGTATGTGCGTGTGGTTGATACATGTGTATGGGATTTCGCCGGA
GGAAGCCGCTCAAGAGATTCAAAAGGAAACAGGCCGCACCCCTGGAACAG
TTCGAAGAACATCTGCTCAGAAAGTTGCCCACCTTATTGCCGCGGGTACC
ATGACTGGATTCAAAAAGTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:469915..470685+

>Ggra6771.t1 ID=Ggra6771.t1|Name=Ggra6771.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000056_pilon:469915..470685+ (Gracilaria gracilis GNS1m male)
ATGGCCGCGTACGCCTCATCATTTCGTTTATTTGCAGGCAATACGAGATC
GGTCAGAGAAGGTAGCGTTATCGTAGGCAGCGATAGTCACTTGTGTAAAC
CCAAGAAGTTGCGGCGGAAATCGACAATTGTCGGTCAACATTTGTTCAAG
CAGTCCATAGCCAAAGGCTTTCCCCAGCCAAAGTCCATCGATTCTGAAGC
AGGTCTGTGGCAGTATAACACTTTGGCAGCCTGTTTGAGAGAAATGTCAG
AGAACAGCTTCAATTTTTCTCGCGTGTCAGATCGCGACGAGTTGGCGTTC
GGGTCTGCACGGCCTGGGTTTCCATCTAAAGAAGTAACTGCGGAAGAACT
GGAGCCATGGGTGAGGTTTATGAAAGCCAAGGGTGTGAAGCGTGTCCTGA
GCCTTCTCGGGGACGATGAAAAAGAGTACTACAAATTCGACATTGACCAG
GAGATGACATCTGCTTTCGGTGAAGGAAAATACACTCGGACTTCTGTGTT
TGCTCCGAATTCCATGGATGTCATAATCTCTGCCTTAGATGCTGCGCACA
AAGCTGAAGAACCAATTGTCATTCACTGTTCAGGAGGAGAAGGCCGTGCA
GCAATTGGTATGTGCGTGTGGTTGATACATGTGTATGGGATTTCGCCGGA
GGAAGCCGCTCAAGAGATTCAAAAGGAAACAGGCCGCACCCCTGGAACAG
TTCGAAGAACATCTGCTCAGAAAGTTGCCCACCTTATTGCCGCGGGTACC
ATGACTGGATTCAAAAAGTAG
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