Ggra6770.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6770.t1
Unique NameGgra6770.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length331
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:465134..466126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707880.1
PFAMsATP-synt
Max annot lvl2759|Eukaryota
KEGG koko:K02136
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00158
GOsGO:0000275,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005756,GO:0016020,GO:0016469,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0033178,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0045261,GO:0045269,GO:0098796,GO:0098798,GO:0098800
Evalue4.73e-101
EggNOG OGsCOG0224@1|root,KOG1531@2759|Eukaryota
Descriptionproton-transporting ATP synthase activity, rotational mechanism
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6770Ggra6770Gracilaria gracilis GNS1m malegenetig00000056_pilon 465134..466126 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6770.t1.start1Ggra6770.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 465134..465136 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6770.t1.CDS1Ggra6770.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 465134..466126 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6770.t1.exon1Ggra6770.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 465134..466126 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6770.t1.stop1Ggra6770.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 466124..466126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6770.t1Ggra6770.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 465134..466126 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6770.t1 ID=Ggra6770.t1|Name=Ggra6770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=331bp
MMRAAGQRPNALSPSASLVALHSRSPFVLSHPAGANAGWLAVEEPVRWAN
LKAISDRMRSVGSVGKITKAMKMVAAAKLRSVQTMQENSRPFAVGLQGFF
KTMDDSDAVTKTDPEADSAPTRFVVAVTSDRGLCGGVNSSIVKRIKSMIT
SNKSINHAIMLLGDKGRDGIARVHGDSILVSFKDVFKVPVSFPQVCLIAE
DILNREYDEIVLVFNEFKSVIAQETIEKPIVGLKALMASAEAFDEYEFDS
DMDSAQVLVDLFEFQLATQLFNALLENATSEQAARMTAMDNASRNASDML
QTLTLSYNRQRQAAITQELSEITSGAAALD*
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spliced messenger RNA

>Ggra6770.t1 ID=Ggra6770.t1|Name=Ggra6770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000056_pilon:465134..466126+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGGGCCGCCGGCCAGCGCCCCAACGCCCTTTCCCCATCCGCCTC
GCTCGTCGCGCTGCACTCGCGATCCCCGTTCGTCCTCTCCCATCCGGCCG
GTGCCAATGCCGGGTGGCTCGCCGTTGAAGAACCCGTCAGATGGGCGAAT
CTTAAGGCTATTTCCGACCGCATGCGATCCGTTGGCTCTGTTGGTAAGAT
CACCAAGGCCATGAAAATGGTTGCGGCCGCCAAGTTGCGCTCCGTGCAGA
CCATGCAGGAGAATTCTCGCCCGTTTGCAGTCGGATTGCAAGGTTTCTTC
AAGACCATGGATGATTCCGATGCGGTCACCAAGACTGACCCTGAGGCTGA
TTCGGCTCCCACGCGATTTGTTGTTGCTGTCACTTCCGATCGCGGTTTAT
GCGGTGGTGTCAATTCTTCAATCGTGAAGAGGATTAAGAGCATGATCACG
AGCAACAAGAGCATCAATCACGCAATCATGCTTCTTGGCGATAAGGGCCG
CGATGGTATAGCTCGCGTTCATGGCGACAGCATTCTTGTCTCCTTCAAAG
ACGTCTTCAAGGTGCCAGTATCCTTCCCACAAGTTTGCTTAATTGCCGAG
GACATTCTAAATCGCGAATACGACGAGATCGTGCTGGTGTTTAACGAATT
CAAGTCAGTTATTGCACAAGAAACAATTGAGAAGCCTATTGTGGGCCTCA
AGGCTCTCATGGCCTCTGCGGAAGCTTTTGACGAATATGAGTTCGACTCT
GATATGGACTCTGCCCAGGTGCTCGTGGATCTTTTCGAGTTTCAACTGGC
TACCCAATTGTTCAACGCCCTCTTGGAGAATGCTACCTCAGAACAGGCCG
CGCGAATGACTGCTATGGACAATGCTTCTAGGAACGCTTCAGATATGCTT
CAGACACTTACGCTATCGTACAATCGTCAGCGCCAAGCGGCCATTACTCA
GGAACTTAGCGAAATTACGTCTGGTGCTGCGGCACTCGATTAG
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protein sequence of Ggra6770.t1

>Ggra6770.t1 ID=Ggra6770.t1|Name=Ggra6770.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=331bp
MMRAAGQRPNALSPSASLVALHSRSPFVLSHPAGANAGWLAVEEPVRWAN
LKAISDRMRSVGSVGKITKAMKMVAAAKLRSVQTMQENSRPFAVGLQGFF
KTMDDSDAVTKTDPEADSAPTRFVVAVTSDRGLCGGVNSSIVKRIKSMIT
SNKSINHAIMLLGDKGRDGIARVHGDSILVSFKDVFKVPVSFPQVCLIAE
DILNREYDEIVLVFNEFKSVIAQETIEKPIVGLKALMASAEAFDEYEFDS
DMDSAQVLVDLFEFQLATQLFNALLENATSEQAARMTAMDNASRNASDML
QTLTLSYNRQRQAAITQELSEITSGAAALD*
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mRNA from alignment at tig00000056_pilon:465134..466126+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6770.t1 ID=Ggra6770.t1|Name=Ggra6770.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=993bp|location=Sequence derived from alignment at tig00000056_pilon:465134..466126+ (Gracilaria gracilis GNS1m male)
ATGATGCGGGCCGCCGGCCAGCGCCCCAACGCCCTTTCCCCATCCGCCTC
GCTCGTCGCGCTGCACTCGCGATCCCCGTTCGTCCTCTCCCATCCGGCCG
GTGCCAATGCCGGGTGGCTCGCCGTTGAAGAACCCGTCAGATGGGCGAAT
CTTAAGGCTATTTCCGACCGCATGCGATCCGTTGGCTCTGTTGGTAAGAT
CACCAAGGCCATGAAAATGGTTGCGGCCGCCAAGTTGCGCTCCGTGCAGA
CCATGCAGGAGAATTCTCGCCCGTTTGCAGTCGGATTGCAAGGTTTCTTC
AAGACCATGGATGATTCCGATGCGGTCACCAAGACTGACCCTGAGGCTGA
TTCGGCTCCCACGCGATTTGTTGTTGCTGTCACTTCCGATCGCGGTTTAT
GCGGTGGTGTCAATTCTTCAATCGTGAAGAGGATTAAGAGCATGATCACG
AGCAACAAGAGCATCAATCACGCAATCATGCTTCTTGGCGATAAGGGCCG
CGATGGTATAGCTCGCGTTCATGGCGACAGCATTCTTGTCTCCTTCAAAG
ACGTCTTCAAGGTGCCAGTATCCTTCCCACAAGTTTGCTTAATTGCCGAG
GACATTCTAAATCGCGAATACGACGAGATCGTGCTGGTGTTTAACGAATT
CAAGTCAGTTATTGCACAAGAAACAATTGAGAAGCCTATTGTGGGCCTCA
AGGCTCTCATGGCCTCTGCGGAAGCTTTTGACGAATATGAGTTCGACTCT
GATATGGACTCTGCCCAGGTGCTCGTGGATCTTTTCGAGTTTCAACTGGC
TACCCAATTGTTCAACGCCCTCTTGGAGAATGCTACCTCAGAACAGGCCG
CGCGAATGACTGCTATGGACAATGCTTCTAGGAACGCTTCAGATATGCTT
CAGACACTTACGCTATCGTACAATCGTCAGCGCCAAGCGGCCATTACTCA
GGAACTTAGCGAAATTACGTCTGGTGCTGCGGCACTCGATTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:465134..466126+

>Ggra6770.t1 ID=Ggra6770.t1|Name=Ggra6770.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=993bp|location=Sequence derived from alignment at tig00000056_pilon:465134..466126+ (Gracilaria gracilis GNS1m male)
ATGATGCGGGCCGCCGGCCAGCGCCCCAACGCCCTTTCCCCATCCGCCTC
GCTCGTCGCGCTGCACTCGCGATCCCCGTTCGTCCTCTCCCATCCGGCCG
GTGCCAATGCCGGGTGGCTCGCCGTTGAAGAACCCGTCAGATGGGCGAAT
CTTAAGGCTATTTCCGACCGCATGCGATCCGTTGGCTCTGTTGGTAAGAT
CACCAAGGCCATGAAAATGGTTGCGGCCGCCAAGTTGCGCTCCGTGCAGA
CCATGCAGGAGAATTCTCGCCCGTTTGCAGTCGGATTGCAAGGTTTCTTC
AAGACCATGGATGATTCCGATGCGGTCACCAAGACTGACCCTGAGGCTGA
TTCGGCTCCCACGCGATTTGTTGTTGCTGTCACTTCCGATCGCGGTTTAT
GCGGTGGTGTCAATTCTTCAATCGTGAAGAGGATTAAGAGCATGATCACG
AGCAACAAGAGCATCAATCACGCAATCATGCTTCTTGGCGATAAGGGCCG
CGATGGTATAGCTCGCGTTCATGGCGACAGCATTCTTGTCTCCTTCAAAG
ACGTCTTCAAGGTGCCAGTATCCTTCCCACAAGTTTGCTTAATTGCCGAG
GACATTCTAAATCGCGAATACGACGAGATCGTGCTGGTGTTTAACGAATT
CAAGTCAGTTATTGCACAAGAAACAATTGAGAAGCCTATTGTGGGCCTCA
AGGCTCTCATGGCCTCTGCGGAAGCTTTTGACGAATATGAGTTCGACTCT
GATATGGACTCTGCCCAGGTGCTCGTGGATCTTTTCGAGTTTCAACTGGC
TACCCAATTGTTCAACGCCCTCTTGGAGAATGCTACCTCAGAACAGGCCG
CGCGAATGACTGCTATGGACAATGCTTCTAGGAACGCTTCAGATATGCTT
CAGACACTTACGCTATCGTACAATCGTCAGCGCCAAGCGGCCATTACTCA
GGAACTTAGCGAAATTACGTCTGGTGCTGCGGCACTCGATTAG
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