Ggra6764.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6764.t1
Unique NameGgra6764.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:454128..455522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMR015CT
Preferred nameSQD2
PFAMsGlyco_trans_1_4,Glyco_transf_4,Glycos_transf_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K06119
KEGG ReactionR06867
KEGG Pathwayko00561,ko01100,map00561,map01100
GOsGO:0000030,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006629,GO:0006643,GO:0006664,GO:0006790,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0008194,GO:0008610,GO:0009058,GO:0009247,GO:0009267,GO:0009507,GO:0009526,GO:0009536,GO:0009605,GO:0009941,GO:0009987,GO:0009991,GO:0016036,GO:0016740,GO:0016757,GO:0016758,GO:0031667,GO:0031668,GO:0031669,GO:0031967,GO:0031975,GO:0033554,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046467,GO:0046505,GO:0046506,GO:0050896,GO:0051716,GO:0070085,GO:0071496,GO:0071704,GO:0097502,GO:1901135,GO:1901137,GO:1901576,GO:1903509
Evalue2.09e-159
EggNOG OGsCOG0438@1|root,KOG1111@2759|Eukaryota
Descriptionphosphatidylinositol N-acetylglucosaminyltransferase activity
COG categoryM
CAZyGT4
BiGG ReactioniRC1080.CRv4_Au5_s1_g1736_t1
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6764Ggra6764Gracilaria gracilis GNS1m malegenetig00000056_pilon 454128..455522 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6764.t1.stop1Ggra6764.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 454128..454130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6764.t1.CDS1Ggra6764.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 454128..455522 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6764.t1.exon1Ggra6764.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 454128..455522 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6764.t1.start1Ggra6764.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 455520..455522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6764.t1Ggra6764.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 454128..455522 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6764.t1 ID=Ggra6764.t1|Name=Ggra6764.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp
MTRRRRGVFARADTGTTPDEAVAAATATHSYAVASGHNLQLTATPPRRVA
LLVEPSPFTHTSGYSNRFKNLIEQLRHAGDEVLVIVPDNDRDAPTEFAGA
KIVNVPGFRFPLYRRITLTLGLRGVYRALKHFDPDVIHLTTPGFLIFATL
LFARLLRKALLLSYHTHLPIYAKDYGLGSLQRVIWTMLRLQHNRADFTLT
TSPQLCEELVTNGFQRVGLWRKGIDTVIFNPTFKCDAMRHRLTAGRPQQP
LLIYVGRIGAEKNLIFFKQLMERFSHCRLALVGDGPYKHTLQRELANTNT
VFTGILHGEQLSRAFASADLFVMPSESETLGFVVLESMASGVPVVGANAG
GIPDIICDGQNGFLFAPGSQAECGQRVQQLLDDEQLRARMGRAARDEALK
WSWKASAAATRNVGYGRAISNFKYRAMGGLGLPRSLTWLRWVRVKLAQLK
RRLFGRFLVAINAQ*
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spliced messenger RNA

>Ggra6764.t1 ID=Ggra6764.t1|Name=Ggra6764.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000056_pilon:454128..455522- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGCCGCCGCCGCGGCGTGTTTGCGCGCGCCGACACCGGCACCAC
CCCGGACGAGGCCGTCGCCGCCGCCACCGCCACCCACTCCTACGCCGTCG
CCTCCGGTCACAACCTGCAACTCACCGCCACCCCGCCACGCCGTGTCGCC
CTGCTCGTCGAGCCCTCGCCCTTCACCCACACCTCGGGCTACTCCAACCG
CTTCAAGAACCTCATCGAGCAGCTGCGCCACGCCGGAGACGAGGTGCTCG
TCATCGTGCCGGACAATGACCGAGACGCCCCCACCGAGTTTGCCGGCGCC
AAAATCGTCAACGTGCCGGGCTTCCGCTTCCCGCTCTACCGCCGCATCAC
CCTCACCCTCGGCTTGCGCGGCGTGTACCGCGCCCTCAAGCACTTTGACC
CGGACGTCATCCACCTCACCACCCCGGGCTTTCTCATCTTTGCCACCCTG
TTGTTCGCGCGCCTGCTGCGCAAGGCGCTGCTGCTCAGCTACCACACCCA
CCTGCCCATCTACGCAAAGGACTACGGGCTGGGCTCGCTGCAGCGCGTCA
TCTGGACCATGCTGCGCCTGCAGCACAACCGCGCCGACTTTACGCTCACC
ACGTCGCCGCAGCTGTGCGAGGAGCTGGTCACCAACGGCTTCCAGCGCGT
CGGGCTGTGGAGGAAGGGCATTGACACTGTCATTTTCAACCCCACCTTCA
AGTGCGATGCCATGAGGCATCGCCTCACCGCCGGCCGCCCGCAACAGCCG
CTGCTCATCTACGTGGGGCGTATCGGCGCCGAGAAGAACCTCATCTTCTT
CAAACAGCTCATGGAGCGCTTCTCGCACTGCCGACTGGCGCTGGTGGGCG
ACGGCCCGTACAAACACACGCTGCAGCGCGAGCTGGCCAACACCAACACC
GTTTTTACTGGCATTCTGCACGGCGAGCAGCTCAGCCGCGCATTTGCGTC
CGCCGACCTGTTCGTCATGCCGTCCGAGTCCGAAACGCTCGGCTTCGTCG
TGCTGGAGAGCATGGCGTCCGGCGTGCCCGTCGTGGGCGCCAACGCGGGC
GGCATCCCGGACATCATCTGCGATGGGCAGAACGGCTTCCTGTTCGCGCC
CGGCAGTCAGGCCGAGTGCGGCCAGCGCGTGCAGCAGCTGCTGGACGACG
AACAGCTCAGGGCGCGCATGGGGCGCGCCGCGCGCGACGAGGCGCTCAAG
TGGTCGTGGAAGGCGTCGGCCGCCGCTACAAGGAACGTCGGCTATGGACG
CGCCATCTCCAACTTCAAGTACCGCGCCATGGGAGGCTTGGGCTTGCCGC
GCTCGCTCACGTGGCTGCGTTGGGTGCGCGTCAAACTGGCGCAGTTGAAG
CGCCGCCTGTTTGGCCGCTTCCTGGTCGCCATCAACGCGCAGTAA
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protein sequence of Ggra6764.t1

>Ggra6764.t1 ID=Ggra6764.t1|Name=Ggra6764.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MTRRRRGVFARADTGTTPDEAVAAATATHSYAVASGHNLQLTATPPRRVA
LLVEPSPFTHTSGYSNRFKNLIEQLRHAGDEVLVIVPDNDRDAPTEFAGA
KIVNVPGFRFPLYRRITLTLGLRGVYRALKHFDPDVIHLTTPGFLIFATL
LFARLLRKALLLSYHTHLPIYAKDYGLGSLQRVIWTMLRLQHNRADFTLT
TSPQLCEELVTNGFQRVGLWRKGIDTVIFNPTFKCDAMRHRLTAGRPQQP
LLIYVGRIGAEKNLIFFKQLMERFSHCRLALVGDGPYKHTLQRELANTNT
VFTGILHGEQLSRAFASADLFVMPSESETLGFVVLESMASGVPVVGANAG
GIPDIICDGQNGFLFAPGSQAECGQRVQQLLDDEQLRARMGRAARDEALK
WSWKASAAATRNVGYGRAISNFKYRAMGGLGLPRSLTWLRWVRVKLAQLK
RRLFGRFLVAINAQ*
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mRNA from alignment at tig00000056_pilon:454128..455522-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6764.t1 ID=Ggra6764.t1|Name=Ggra6764.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000056_pilon:454128..455522- (Gracilaria gracilis GNS1m male)
ATGACGCGCCGCCGCCGCGGCGTGTTTGCGCGCGCCGACACCGGCACCAC
CCCGGACGAGGCCGTCGCCGCCGCCACCGCCACCCACTCCTACGCCGTCG
CCTCCGGTCACAACCTGCAACTCACCGCCACCCCGCCACGCCGTGTCGCC
CTGCTCGTCGAGCCCTCGCCCTTCACCCACACCTCGGGCTACTCCAACCG
CTTCAAGAACCTCATCGAGCAGCTGCGCCACGCCGGAGACGAGGTGCTCG
TCATCGTGCCGGACAATGACCGAGACGCCCCCACCGAGTTTGCCGGCGCC
AAAATCGTCAACGTGCCGGGCTTCCGCTTCCCGCTCTACCGCCGCATCAC
CCTCACCCTCGGCTTGCGCGGCGTGTACCGCGCCCTCAAGCACTTTGACC
CGGACGTCATCCACCTCACCACCCCGGGCTTTCTCATCTTTGCCACCCTG
TTGTTCGCGCGCCTGCTGCGCAAGGCGCTGCTGCTCAGCTACCACACCCA
CCTGCCCATCTACGCAAAGGACTACGGGCTGGGCTCGCTGCAGCGCGTCA
TCTGGACCATGCTGCGCCTGCAGCACAACCGCGCCGACTTTACGCTCACC
ACGTCGCCGCAGCTGTGCGAGGAGCTGGTCACCAACGGCTTCCAGCGCGT
CGGGCTGTGGAGGAAGGGCATTGACACTGTCATTTTCAACCCCACCTTCA
AGTGCGATGCCATGAGGCATCGCCTCACCGCCGGCCGCCCGCAACAGCCG
CTGCTCATCTACGTGGGGCGTATCGGCGCCGAGAAGAACCTCATCTTCTT
CAAACAGCTCATGGAGCGCTTCTCGCACTGCCGACTGGCGCTGGTGGGCG
ACGGCCCGTACAAACACACGCTGCAGCGCGAGCTGGCCAACACCAACACC
GTTTTTACTGGCATTCTGCACGGCGAGCAGCTCAGCCGCGCATTTGCGTC
CGCCGACCTGTTCGTCATGCCGTCCGAGTCCGAAACGCTCGGCTTCGTCG
TGCTGGAGAGCATGGCGTCCGGCGTGCCCGTCGTGGGCGCCAACGCGGGC
GGCATCCCGGACATCATCTGCGATGGGCAGAACGGCTTCCTGTTCGCGCC
CGGCAGTCAGGCCGAGTGCGGCCAGCGCGTGCAGCAGCTGCTGGACGACG
AACAGCTCAGGGCGCGCATGGGGCGCGCCGCGCGCGACGAGGCGCTCAAG
TGGTCGTGGAAGGCGTCGGCCGCCGCTACAAGGAACGTCGGCTATGGACG
CGCCATCTCCAACTTCAAGTACCGCGCCATGGGAGGCTTGGGCTTGCCGC
GCTCGCTCACGTGGCTGCGTTGGGTGCGCGTCAAACTGGCGCAGTTGAAG
CGCCGCCTGTTTGGCCGCTTCCTGGTCGCCATCAACGCGCAGTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:454128..455522-

>Ggra6764.t1 ID=Ggra6764.t1|Name=Ggra6764.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00000056_pilon:454128..455522- (Gracilaria gracilis GNS1m male)
ATGACGCGCCGCCGCCGCGGCGTGTTTGCGCGCGCCGACACCGGCACCAC
CCCGGACGAGGCCGTCGCCGCCGCCACCGCCACCCACTCCTACGCCGTCG
CCTCCGGTCACAACCTGCAACTCACCGCCACCCCGCCACGCCGTGTCGCC
CTGCTCGTCGAGCCCTCGCCCTTCACCCACACCTCGGGCTACTCCAACCG
CTTCAAGAACCTCATCGAGCAGCTGCGCCACGCCGGAGACGAGGTGCTCG
TCATCGTGCCGGACAATGACCGAGACGCCCCCACCGAGTTTGCCGGCGCC
AAAATCGTCAACGTGCCGGGCTTCCGCTTCCCGCTCTACCGCCGCATCAC
CCTCACCCTCGGCTTGCGCGGCGTGTACCGCGCCCTCAAGCACTTTGACC
CGGACGTCATCCACCTCACCACCCCGGGCTTTCTCATCTTTGCCACCCTG
TTGTTCGCGCGCCTGCTGCGCAAGGCGCTGCTGCTCAGCTACCACACCCA
CCTGCCCATCTACGCAAAGGACTACGGGCTGGGCTCGCTGCAGCGCGTCA
TCTGGACCATGCTGCGCCTGCAGCACAACCGCGCCGACTTTACGCTCACC
ACGTCGCCGCAGCTGTGCGAGGAGCTGGTCACCAACGGCTTCCAGCGCGT
CGGGCTGTGGAGGAAGGGCATTGACACTGTCATTTTCAACCCCACCTTCA
AGTGCGATGCCATGAGGCATCGCCTCACCGCCGGCCGCCCGCAACAGCCG
CTGCTCATCTACGTGGGGCGTATCGGCGCCGAGAAGAACCTCATCTTCTT
CAAACAGCTCATGGAGCGCTTCTCGCACTGCCGACTGGCGCTGGTGGGCG
ACGGCCCGTACAAACACACGCTGCAGCGCGAGCTGGCCAACACCAACACC
GTTTTTACTGGCATTCTGCACGGCGAGCAGCTCAGCCGCGCATTTGCGTC
CGCCGACCTGTTCGTCATGCCGTCCGAGTCCGAAACGCTCGGCTTCGTCG
TGCTGGAGAGCATGGCGTCCGGCGTGCCCGTCGTGGGCGCCAACGCGGGC
GGCATCCCGGACATCATCTGCGATGGGCAGAACGGCTTCCTGTTCGCGCC
CGGCAGTCAGGCCGAGTGCGGCCAGCGCGTGCAGCAGCTGCTGGACGACG
AACAGCTCAGGGCGCGCATGGGGCGCGCCGCGCGCGACGAGGCGCTCAAG
TGGTCGTGGAAGGCGTCGGCCGCCGCTACAAGGAACGTCGGCTATGGACG
CGCCATCTCCAACTTCAAGTACCGCGCCATGGGAGGCTTGGGCTTGCCGC
GCTCGCTCACGTGGCTGCGTTGGGTGCGCGTCAAACTGGCGCAGTTGAAG
CGCCGCCTGTTTGGCCGCTTCCTGGTCGCCATCAACGCGCAGTAA
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