Ggra6759.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6759.t1
Unique NameGgra6759.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:447697..448770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX49692
Preferred nameKAE1
PFAMsPeptidase_M22
Max annot lvl2759|Eukaryota
KEGG rclassRC00070,RC00416
KEGG koko:K01409,ko:K09487
KEGG ReactionR10648
KEGG Pathwayko04141,ko04151,ko04626,ko04657,ko04915,ko04918,ko05200,ko05215,ko05418,map04141,map04151,map04626,map04657,map04915,map04918,map05200,map05215,map05418
GOsGO:0000408,GO:0000722,GO:0000723,GO:0002949,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005886,GO:0006139,GO:0006259,GO:0006310,GO:0006312,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0006996,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031490,GO:0031974,GO:0031981,GO:0032200,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070525,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue1.55e-165
EggNOG OGsCOG0533@1|root,KOG2708@2759|Eukaryota
EC2.3.1.234
DescriptionN(6)-L-threonylcarbamoyladenine synthase activity
COG categoryO
BRITEko00000,ko00001,ko01000,ko03016,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6759Ggra6759Gracilaria gracilis GNS1m malegenetig00000056_pilon 447697..448770 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6759.t1.stop1Ggra6759.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 447697..447699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6759.t1.CDS1Ggra6759.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 447697..448770 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6759.t1.exon1Ggra6759.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 447697..448770 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6759.t1.start1Ggra6759.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 448768..448770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6759.t1Ggra6759.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 447697..448770 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6759.t1 ID=Ggra6759.t1|Name=Ggra6759.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=358bp
MVAPSAEAPDAADPRKRYVLGMEGSANKIGVAVVTTDGKILSNVRETFVP
PTGHGFLPSQTAAHHRKHVVPLISRALSEAAVSPNEIMCIGYTKGPGMGA
PLRSVAVAARTVSLLWHCPLVPVNHCVAHIEMGRLVTASRNPVVLYVSGG
NTQVIAYAHNRYRIFGETIDIAVGNCLDRFARVVGLSNDPSPGYNIEQAA
KRGDVSKRKLMELPYVVKGMDVSFSGLLSFIETEAKKVLSDGSFTVEDLC
FSLQETVFAMLVEVTERAMAHCRQSDVLCVGGVGCNVRLQQMLSEMASER
GGRAFCTDERFCIDNGAMVAWTASLMFQAGGAAIPVADATCTQRFRTDDV
YVNWRDD*
back to top

spliced messenger RNA

>Ggra6759.t1 ID=Ggra6759.t1|Name=Ggra6759.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000056_pilon:447697..448770- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCCCCTCAGCTGAGGCGCCCGATGCCGCAGATCCGCGCAAACG
ATACGTCCTCGGAATGGAGGGCAGCGCCAACAAGATTGGCGTTGCCGTCG
TCACTACCGATGGCAAAATCCTGTCCAATGTGCGCGAAACATTCGTCCCT
CCAACCGGGCACGGTTTCCTTCCGAGTCAAACTGCCGCACATCACCGGAA
ACACGTCGTTCCCCTCATATCGCGCGCCTTGTCAGAAGCTGCGGTCAGTC
CCAACGAAATCATGTGCATTGGCTACACGAAGGGTCCGGGCATGGGAGCT
CCTTTGAGATCTGTTGCTGTTGCTGCCCGCACTGTCTCTTTGCTGTGGCA
CTGTCCGCTTGTTCCCGTCAACCATTGTGTGGCGCACATTGAAATGGGTA
GGCTTGTCACAGCATCTAGAAACCCTGTTGTTTTGTATGTGTCGGGTGGG
AATACCCAAGTTATCGCCTACGCGCATAATCGCTATCGCATATTTGGTGA
GACCATTGATATCGCTGTGGGTAACTGTCTCGACCGCTTTGCACGTGTCG
TCGGCCTTTCGAACGACCCTTCCCCAGGTTACAACATTGAGCAGGCTGCG
AAAAGGGGAGATGTGAGCAAGCGCAAGCTCATGGAACTCCCTTACGTCGT
CAAAGGAATGGATGTGTCGTTTTCGGGCTTGTTATCCTTCATTGAAACCG
AGGCGAAAAAGGTGCTTTCTGATGGATCATTTACTGTCGAAGACCTTTGC
TTCAGTCTTCAAGAAACGGTTTTTGCAATGTTAGTAGAGGTTACTGAACG
AGCAATGGCTCACTGTCGCCAGAGTGACGTGCTTTGTGTCGGTGGCGTTG
GTTGCAATGTCAGATTGCAACAAATGCTGAGTGAAATGGCTTCGGAGCGA
GGCGGCCGTGCATTCTGCACCGATGAGCGCTTTTGCATCGACAATGGCGC
CATGGTGGCCTGGACCGCGTCACTAATGTTTCAGGCGGGCGGTGCTGCTA
TTCCGGTTGCTGACGCTACATGCACTCAACGTTTCCGAACCGACGATGTC
TACGTGAATTGGAGAGATGATTAG
back to top

protein sequence of Ggra6759.t1

>Ggra6759.t1 ID=Ggra6759.t1|Name=Ggra6759.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=358bp
MVAPSAEAPDAADPRKRYVLGMEGSANKIGVAVVTTDGKILSNVRETFVP
PTGHGFLPSQTAAHHRKHVVPLISRALSEAAVSPNEIMCIGYTKGPGMGA
PLRSVAVAARTVSLLWHCPLVPVNHCVAHIEMGRLVTASRNPVVLYVSGG
NTQVIAYAHNRYRIFGETIDIAVGNCLDRFARVVGLSNDPSPGYNIEQAA
KRGDVSKRKLMELPYVVKGMDVSFSGLLSFIETEAKKVLSDGSFTVEDLC
FSLQETVFAMLVEVTERAMAHCRQSDVLCVGGVGCNVRLQQMLSEMASER
GGRAFCTDERFCIDNGAMVAWTASLMFQAGGAAIPVADATCTQRFRTDDV
YVNWRDD*
back to top

mRNA from alignment at tig00000056_pilon:447697..448770-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6759.t1 ID=Ggra6759.t1|Name=Ggra6759.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000056_pilon:447697..448770- (Gracilaria gracilis GNS1m male)
ATGGTCGCCCCCTCAGCTGAGGCGCCCGATGCCGCAGATCCGCGCAAACG
ATACGTCCTCGGAATGGAGGGCAGCGCCAACAAGATTGGCGTTGCCGTCG
TCACTACCGATGGCAAAATCCTGTCCAATGTGCGCGAAACATTCGTCCCT
CCAACCGGGCACGGTTTCCTTCCGAGTCAAACTGCCGCACATCACCGGAA
ACACGTCGTTCCCCTCATATCGCGCGCCTTGTCAGAAGCTGCGGTCAGTC
CCAACGAAATCATGTGCATTGGCTACACGAAGGGTCCGGGCATGGGAGCT
CCTTTGAGATCTGTTGCTGTTGCTGCCCGCACTGTCTCTTTGCTGTGGCA
CTGTCCGCTTGTTCCCGTCAACCATTGTGTGGCGCACATTGAAATGGGTA
GGCTTGTCACAGCATCTAGAAACCCTGTTGTTTTGTATGTGTCGGGTGGG
AATACCCAAGTTATCGCCTACGCGCATAATCGCTATCGCATATTTGGTGA
GACCATTGATATCGCTGTGGGTAACTGTCTCGACCGCTTTGCACGTGTCG
TCGGCCTTTCGAACGACCCTTCCCCAGGTTACAACATTGAGCAGGCTGCG
AAAAGGGGAGATGTGAGCAAGCGCAAGCTCATGGAACTCCCTTACGTCGT
CAAAGGAATGGATGTGTCGTTTTCGGGCTTGTTATCCTTCATTGAAACCG
AGGCGAAAAAGGTGCTTTCTGATGGATCATTTACTGTCGAAGACCTTTGC
TTCAGTCTTCAAGAAACGGTTTTTGCAATGTTAGTAGAGGTTACTGAACG
AGCAATGGCTCACTGTCGCCAGAGTGACGTGCTTTGTGTCGGTGGCGTTG
GTTGCAATGTCAGATTGCAACAAATGCTGAGTGAAATGGCTTCGGAGCGA
GGCGGCCGTGCATTCTGCACCGATGAGCGCTTTTGCATCGACAATGGCGC
CATGGTGGCCTGGACCGCGTCACTAATGTTTCAGGCGGGCGGTGCTGCTA
TTCCGGTTGCTGACGCTACATGCACTCAACGTTTCCGAACCGACGATGTC
TACGTGAATTGGAGAGATGATTAG
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:447697..448770-

>Ggra6759.t1 ID=Ggra6759.t1|Name=Ggra6759.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000056_pilon:447697..448770- (Gracilaria gracilis GNS1m male)
ATGGTCGCCCCCTCAGCTGAGGCGCCCGATGCCGCAGATCCGCGCAAACG
ATACGTCCTCGGAATGGAGGGCAGCGCCAACAAGATTGGCGTTGCCGTCG
TCACTACCGATGGCAAAATCCTGTCCAATGTGCGCGAAACATTCGTCCCT
CCAACCGGGCACGGTTTCCTTCCGAGTCAAACTGCCGCACATCACCGGAA
ACACGTCGTTCCCCTCATATCGCGCGCCTTGTCAGAAGCTGCGGTCAGTC
CCAACGAAATCATGTGCATTGGCTACACGAAGGGTCCGGGCATGGGAGCT
CCTTTGAGATCTGTTGCTGTTGCTGCCCGCACTGTCTCTTTGCTGTGGCA
CTGTCCGCTTGTTCCCGTCAACCATTGTGTGGCGCACATTGAAATGGGTA
GGCTTGTCACAGCATCTAGAAACCCTGTTGTTTTGTATGTGTCGGGTGGG
AATACCCAAGTTATCGCCTACGCGCATAATCGCTATCGCATATTTGGTGA
GACCATTGATATCGCTGTGGGTAACTGTCTCGACCGCTTTGCACGTGTCG
TCGGCCTTTCGAACGACCCTTCCCCAGGTTACAACATTGAGCAGGCTGCG
AAAAGGGGAGATGTGAGCAAGCGCAAGCTCATGGAACTCCCTTACGTCGT
CAAAGGAATGGATGTGTCGTTTTCGGGCTTGTTATCCTTCATTGAAACCG
AGGCGAAAAAGGTGCTTTCTGATGGATCATTTACTGTCGAAGACCTTTGC
TTCAGTCTTCAAGAAACGGTTTTTGCAATGTTAGTAGAGGTTACTGAACG
AGCAATGGCTCACTGTCGCCAGAGTGACGTGCTTTGTGTCGGTGGCGTTG
GTTGCAATGTCAGATTGCAACAAATGCTGAGTGAAATGGCTTCGGAGCGA
GGCGGCCGTGCATTCTGCACCGATGAGCGCTTTTGCATCGACAATGGCGC
CATGGTGGCCTGGACCGCGTCACTAATGTTTCAGGCGGGCGGTGCTGCTA
TTCCGGTTGCTGACGCTACATGCACTCAACGTTTCCGAACCGACGATGTC
TACGTGAATTGGAGAGATGATTAG
back to top