Ggra6749.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6749.t1
Unique Name	Ggra6749.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	603

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:345470..347500 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005649264.1
PFAMs	ABC2_membrane,ABC_tran
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K21396
KEGG TC	3.A.1.204
Evalue	8.33e-162
EggNOG OGs	COG1131@1\|root,KOG0061@2759\|Eukaryota,37JQZ@33090\|Viridiplantae,34H44@3041\|Chlorophyta
Description	ABC(ABCG) family transporter White protein-like protein (ABCG)
COG category	Q
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6749	Ggra6749	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 345470..347500 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6749.t1	Ggra6749.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 345470..347500 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6749.t1.stop1	Ggra6749.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 345470..345472 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6749.t1.CDS1	Ggra6749.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 345470..345988 -
Ggra6749.t1.CDS2	Ggra6749.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 346211..347500 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6749.t1.exon1	Ggra6749.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 345470..345988 -
Ggra6749.t1.exon2	Ggra6749.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 346211..347500 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6749.t1.intron1	Ggra6749.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000056_pilon 345989..346210 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6749.t1.start1	Ggra6749.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 347498..347500 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:345470..347500-
coding sequence from alignment at tig00000056_pilon:345470..347500-

mRNA sequence

>Ggra6749.t1 ID=Ggra6749.t1|Name=Ggra6749.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp
MLLAVGGLMATLALPGRTVPSLLLTATAATINIIRRSRKKPAEQRLKQCT
ASSQPVTVQWSHVTCTLSSSKQRSAKRILDDVSGRAKPGRVLAILGPSGS
GKTTLLNALAGRLSESSKAQLFGHITRNGIPVDDDTQPVAYVTQEDLFFS
QLTVRETLDIAAALRLPGDMPQEQKRAFVDALIRKLGLVSTVSTRVGDEK
TRGISGGEKKRLSLGCELISTPRLILCDEPTSGLDAFQAVKVMSSLRELA
RTGHTVICSIHQPSSSIFSMIDDILLLANGRVVYTGDANEAPVFFEKEGF
PLPAQCNPAERYLEHISVDFSSNETIAESNSRIDKLTSSFDKQYRKTDTS
AVAVESKLNGSKIEESVPPLGFFGRLRLLFRRAWKQITRDKKTNISRFMS
SFMSALLFGVIYWRIGNTQTTIQDRLGLLQILRFMGVITLESFTAASYGL
AIGAIMPTTEAAVAVGPSSFVLQIVFGGLYLAEENVPVWARWIPRISLIK
HAYEGLCVNEFRGLEFKAERPYDVKTGDQVLQRMTWENSTVLKTCMSQVR
VLAFNYLATYAILVLKKPRYEKVREPESDPEVSRVESMDAIALPNGKAPV
IS*

spliced messenger RNA

>Ggra6749.t1 ID=Ggra6749.t1|Name=Ggra6749.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1809bp|location=Sequence derived from alignment at tig00000056_pilon:345470..347500- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTTAGCGGTGGGCGGCCTTATGGCCACTCTGGCTCTGCCAGGACG
CACCGTTCCCTCTCTCTTGCTCACCGCCACTGCCGCCACCATCAACATCA
TTCGAAGGTCTCGGAAGAAGCCTGCTGAGCAACGTTTGAAGCAATGTACA
GCCTCATCACAACCGGTCACAGTACAGTGGTCTCATGTTACCTGTACTCT
CTCCTCGTCGAAGCAGCGCAGTGCTAAGCGAATTCTTGATGATGTGTCTG
GAAGAGCCAAACCCGGACGCGTTCTCGCCATTCTGGGTCCGTCTGGTTCG
GGGAAGACTACTCTGCTGAACGCTTTGGCGGGGCGTTTGTCAGAATCTTC
AAAGGCACAGCTATTCGGTCACATTACTCGAAATGGAATCCCGGTGGATG
ATGATACTCAGCCCGTTGCTTACGTTACTCAAGAAGATCTGTTCTTTTCC
CAACTGACCGTGCGCGAAACTCTCGATATTGCAGCTGCGTTAAGACTTCC
AGGGGACATGCCGCAAGAACAGAAACGAGCCTTTGTTGACGCTCTTATCA
GAAAGTTGGGACTTGTATCCACTGTCAGTACCCGTGTCGGGGATGAGAAG
ACTCGAGGTATTTCTGGTGGAGAGAAGAAGAGACTTTCACTTGGATGCGA
GCTCATTTCAACTCCACGACTTATCTTGTGCGACGAACCCACCTCTGGCC
TGGATGCTTTCCAAGCTGTCAAGGTGATGAGCAGTCTACGAGAGCTTGCG
CGAACGGGACATACCGTCATCTGTTCGATTCATCAACCTAGCTCGAGCAT
ATTCTCAATGATTGATGATATTCTGTTGCTTGCAAATGGACGTGTTGTTT
ATACTGGCGACGCGAATGAGGCACCTGTGTTCTTTGAGAAAGAAGGCTTC
CCTCTTCCTGCCCAGTGCAATCCTGCCGAAAGATACCTCGAGCATATTTC
AGTTGATTTCTCGTCGAATGAGACAATCGCAGAATCGAATTCACGCATTG
ACAAGCTTACTAGTTCTTTCGATAAGCAATACCGTAAGACGGATACAAGT
GCTGTTGCTGTGGAATCAAAGCTAAATGGCAGCAAAATCGAGGAAAGTGT
GCCTCCGTTGGGATTCTTCGGAAGACTTCGTTTACTGTTTCGCCGCGCAT
GGAAGCAGATTACGCGTGATAAGAAGACTAATATATCTCGCTTCATGTCC
TCTTTCATGAGTGCTCTTCTGTTTGGTGTCATCTACTGGAGAATTGGAAA
TACTCAGACTACTATTCAGGACCGTCTTGGTTTGTTGCAGATTCTTCGCT
TTATGGGAGTAATCACACTGGAATCGTTTACTGCAGCCTCCTACGGTCTG
GCGATTGGAGCAATCATGCCGACTACTGAAGCAGCAGTAGCGGTTGGGCC
TTCGAGCTTTGTTCTCCAGATTGTTTTCGGCGGTCTATACCTTGCTGAAG
AGAATGTTCCCGTTTGGGCTCGCTGGATTCCTCGCATATCGCTAATAAAG
CATGCATACGAAGGTTTGTGCGTAAACGAGTTTCGAGGACTTGAGTTCAA
AGCCGAGCGTCCGTATGATGTGAAGACCGGTGATCAAGTTCTCCAACGTA
TGACTTGGGAGAATTCTACGGTTCTGAAGACTTGTATGTCTCAGGTTCGT
GTGCTTGCATTCAACTATTTAGCGACATATGCAATTCTGGTTCTGAAGAA
GCCACGGTATGAGAAAGTACGAGAGCCCGAAAGTGATCCTGAAGTGAGTC
GGGTAGAATCCATGGATGCGATTGCTCTTCCGAATGGAAAAGCGCCTGTT
ATATCTTGA

protein sequence of Ggra6749.t1

>Ggra6749.t1 ID=Ggra6749.t1|Name=Ggra6749.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=603bp
MLLAVGGLMATLALPGRTVPSLLLTATAATINIIRRSRKKPAEQRLKQCT
ASSQPVTVQWSHVTCTLSSSKQRSAKRILDDVSGRAKPGRVLAILGPSGS
GKTTLLNALAGRLSESSKAQLFGHITRNGIPVDDDTQPVAYVTQEDLFFS
QLTVRETLDIAAALRLPGDMPQEQKRAFVDALIRKLGLVSTVSTRVGDEK
TRGISGGEKKRLSLGCELISTPRLILCDEPTSGLDAFQAVKVMSSLRELA
RTGHTVICSIHQPSSSIFSMIDDILLLANGRVVYTGDANEAPVFFEKEGF
PLPAQCNPAERYLEHISVDFSSNETIAESNSRIDKLTSSFDKQYRKTDTS
AVAVESKLNGSKIEESVPPLGFFGRLRLLFRRAWKQITRDKKTNISRFMS
SFMSALLFGVIYWRIGNTQTTIQDRLGLLQILRFMGVITLESFTAASYGL
AIGAIMPTTEAAVAVGPSSFVLQIVFGGLYLAEENVPVWARWIPRISLIK
HAYEGLCVNEFRGLEFKAERPYDVKTGDQVLQRMTWENSTVLKTCMSQVR
VLAFNYLATYAILVLKKPRYEKVREPESDPEVSRVESMDAIALPNGKAPV
IS*

mRNA from alignment at tig00000056_pilon:345470..347500-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6749.t1 ID=Ggra6749.t1|Name=Ggra6749.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000056_pilon:345470..347500- (Gracilaria gracilis GNS1m male)
ATGCTGTTAGCGGTGGGCGGCCTTATGGCCACTCTGGCTCTGCCAGGACG
CACCGTTCCCTCTCTCTTGCTCACCGCCACTGCCGCCACCATCAACATCA
TTCGAAGGTCTCGGAAGAAGCCTGCTGAGCAACGTTTGAAGCAATGTACA
GCCTCATCACAACCGGTCACAGTACAGTGGTCTCATGTTACCTGTACTCT
CTCCTCGTCGAAGCAGCGCAGTGCTAAGCGAATTCTTGATGATGTGTCTG
GAAGAGCCAAACCCGGACGCGTTCTCGCCATTCTGGGTCCGTCTGGTTCG
GGGAAGACTACTCTGCTGAACGCTTTGGCGGGGCGTTTGTCAGAATCTTC
AAAGGCACAGCTATTCGGTCACATTACTCGAAATGGAATCCCGGTGGATG
ATGATACTCAGCCCGTTGCTTACGTTACTCAAGAAGATCTGTTCTTTTCC
CAACTGACCGTGCGCGAAACTCTCGATATTGCAGCTGCGTTAAGACTTCC
AGGGGACATGCCGCAAGAACAGAAACGAGCCTTTGTTGACGCTCTTATCA
GAAAGTTGGGACTTGTATCCACTGTCAGTACCCGTGTCGGGGATGAGAAG
ACTCGAGGTATTTCTGGTGGAGAGAAGAAGAGACTTTCACTTGGATGCGA
GCTCATTTCAACTCCACGACTTATCTTGTGCGACGAACCCACCTCTGGCC
TGGATGCTTTCCAAGCTGTCAAGGTGATGAGCAGTCTACGAGAGCTTGCG
CGAACGGGACATACCGTCATCTGTTCGATTCATCAACCTAGCTCGAGCAT
ATTCTCAATGATTGATGATATTCTGTTGCTTGCAAATGGACGTGTTGTTT
ATACTGGCGACGCGAATGAGGCACCTGTGTTCTTTGAGAAAGAAGGCTTC
CCTCTTCCTGCCCAGTGCAATCCTGCCGAAAGATACCTCGAGCATATTTC
AGTTGATTTCTCGTCGAATGAGACAATCGCAGAATCGAATTCACGCATTG
ACAAGCTTACTAGTTCTTTCGATAAGCAATACCGTAAGACGGATACAAGT
GCTGTTGCTGTGGAATCAAAGCTAAATGGCAGCAAAATCGAGGAAAGTGT
GCCTCCGTTGGGATTCTTCGGAAGACTTCGTTTACTGTTTCGCCGCGCAT
GGAAGCAGATTACGCGTGATAAGAAGACTAATATATCTCGCTTCATGTCC
TCTTTCATGAGTGCTCTTCTGTTTGGTGTCATCTACTGGAGAATTGGAAA
TACTCAGACTACTATTCAGGACCGTCTTGGTTTGTTGCAGGTATGTACAA
TTAACACCGCTATGACCGCTCTTGTGAAGACGCTGTATGTTTTCCCCAAG
GAAAGCGTGCTCGTCAATCAGGAACGAGCAAGGGGTTCATATAATGTCGC
ACAGTATTTCTTGAGTAAGCTTCTTGCTGAGATGCCTGTGAGCGCATTCT
TCCCATTATTGTTTTCTTTCACTGTGTATCCAATGGTGCGGCTTTCTGGT
GGTTTGGGTAAGATTCTTCGCTTTATGGGAGTAATCACACTGGAATCGTT
TACTGCAGCCTCCTACGGTCTGGCGATTGGAGCAATCATGCCGACTACTG
AAGCAGCAGTAGCGGTTGGGCCTTCGAGCTTTGTTCTCCAGATTGTTTTC
GGCGGTCTATACCTTGCTGAAGAGAATGTTCCCGTTTGGGCTCGCTGGAT
TCCTCGCATATCGCTAATAAAGCATGCATACGAAGGTTTGTGCGTAAACG
AGTTTCGAGGACTTGAGTTCAAAGCCGAGCGTCCGTATGATGTGAAGACC
GGTGATCAAGTTCTCCAACGTATGACTTGGGAGAATTCTACGGTTCTGAA
GACTTGTATGTCTCAGGTTCGTGTGCTTGCATTCAACTATTTAGCGACAT
ATGCAATTCTGGTTCTGAAGAAGCCACGGTATGAGAAAGTACGAGAGCCC
GAAAGTGATCCTGAAGTGAGTCGGGTAGAATCCATGGATGCGATTGCTCT
TCCGAATGGAAAAGCGCCTGTTATATCTTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:345470..347500-

>Ggra6749.t1 ID=Ggra6749.t1|Name=Ggra6749.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1809bp|location=Sequence derived from alignment at tig00000056_pilon:345470..347500- (Gracilaria gracilis GNS1m male)
ATGCTGTTAGCGGTGGGCGGCCTTATGGCCACTCTGGCTCTGCCAGGACG
CACCGTTCCCTCTCTCTTGCTCACCGCCACTGCCGCCACCATCAACATCA
TTCGAAGGTCTCGGAAGAAGCCTGCTGAGCAACGTTTGAAGCAATGTACA
GCCTCATCACAACCGGTCACAGTACAGTGGTCTCATGTTACCTGTACTCT
CTCCTCGTCGAAGCAGCGCAGTGCTAAGCGAATTCTTGATGATGTGTCTG
GAAGAGCCAAACCCGGACGCGTTCTCGCCATTCTGGGTCCGTCTGGTTCG
GGGAAGACTACTCTGCTGAACGCTTTGGCGGGGCGTTTGTCAGAATCTTC
AAAGGCACAGCTATTCGGTCACATTACTCGAAATGGAATCCCGGTGGATG
ATGATACTCAGCCCGTTGCTTACGTTACTCAAGAAGATCTGTTCTTTTCC
CAACTGACCGTGCGCGAAACTCTCGATATTGCAGCTGCGTTAAGACTTCC
AGGGGACATGCCGCAAGAACAGAAACGAGCCTTTGTTGACGCTCTTATCA
GAAAGTTGGGACTTGTATCCACTGTCAGTACCCGTGTCGGGGATGAGAAG
ACTCGAGGTATTTCTGGTGGAGAGAAGAAGAGACTTTCACTTGGATGCGA
GCTCATTTCAACTCCACGACTTATCTTGTGCGACGAACCCACCTCTGGCC
TGGATGCTTTCCAAGCTGTCAAGGTGATGAGCAGTCTACGAGAGCTTGCG
CGAACGGGACATACCGTCATCTGTTCGATTCATCAACCTAGCTCGAGCAT
ATTCTCAATGATTGATGATATTCTGTTGCTTGCAAATGGACGTGTTGTTT
ATACTGGCGACGCGAATGAGGCACCTGTGTTCTTTGAGAAAGAAGGCTTC
CCTCTTCCTGCCCAGTGCAATCCTGCCGAAAGATACCTCGAGCATATTTC
AGTTGATTTCTCGTCGAATGAGACAATCGCAGAATCGAATTCACGCATTG
ACAAGCTTACTAGTTCTTTCGATAAGCAATACCGTAAGACGGATACAAGT
GCTGTTGCTGTGGAATCAAAGCTAAATGGCAGCAAAATCGAGGAAAGTGT
GCCTCCGTTGGGATTCTTCGGAAGACTTCGTTTACTGTTTCGCCGCGCAT
GGAAGCAGATTACGCGTGATAAGAAGACTAATATATCTCGCTTCATGTCC
TCTTTCATGAGTGCTCTTCTGTTTGGTGTCATCTACTGGAGAATTGGAAA
TACTCAGACTACTATTCAGGACCGTCTTGGTTTGTTGCAGATTCTTCGCT
TTATGGGAGTAATCACACTGGAATCGTTTACTGCAGCCTCCTACGGTCTG
GCGATTGGAGCAATCATGCCGACTACTGAAGCAGCAGTAGCGGTTGGGCC
TTCGAGCTTTGTTCTCCAGATTGTTTTCGGCGGTCTATACCTTGCTGAAG
AGAATGTTCCCGTTTGGGCTCGCTGGATTCCTCGCATATCGCTAATAAAG
CATGCATACGAAGGTTTGTGCGTAAACGAGTTTCGAGGACTTGAGTTCAA
AGCCGAGCGTCCGTATGATGTGAAGACCGGTGATCAAGTTCTCCAACGTA
TGACTTGGGAGAATTCTACGGTTCTGAAGACTTGTATGTCTCAGGTTCGT
GTGCTTGCATTCAACTATTTAGCGACATATGCAATTCTGGTTCTGAAGAA
GCCACGGTATGAGAAAGTACGAGAGCCCGAAAGTGATCCTGAAGTGAGTC
GGGTAGAATCCATGGATGCGATTGCTCTTCCGAATGGAAAAGCGCCTGTT
ATATCTTGA