Ggra6747.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6747.t1
Unique NameGgra6747.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:341931..342659 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ31869
Preferred nameEDA14
PFAMsUtp11
Max annot lvl35493|Streptophyta
KEGG koko:K14769
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Evalue1.44e-29
EggNOG OGsCOG5223@1|root,KOG3237@2759|Eukaryota,37HZ9@33090|Viridiplantae,3G7FX@35493|Streptophyta
DescriptionU3 small nucleolar RNA-associated protein 11
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6747Ggra6747Gracilaria gracilis GNS1m malegenetig00000056_pilon 341931..342659 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6747.t1.stop1Ggra6747.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 341931..341933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6747.t1.CDS1Ggra6747.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 341931..342659 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6747.t1.exon1Ggra6747.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 341931..342659 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6747.t1.start1Ggra6747.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 342657..342659 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6747.t1Ggra6747.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 341931..342659 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6747.t1 ID=Ggra6747.t1|Name=Ggra6747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=243bp
MSSFSKNILPRREHRERAQPALRIQKHGLLEKKKDYKLRAKDHNRKRLRV
KILREKAAFRNPDEFYYGMINSSTSGGRVKRVLNAKEKDAIPIANRDREQ
RMLAETQDSKYVQLKSSAERASLRRMRDRLHFTSAAAARPKNHIKFVQDV
NGDEQVINVESRKRGQDKSTSSKADKLVAKEQGKAYRYLKRRAERQEKLD
TVLTDMQTAKNLMSKGRRFVVRRANPETGAPPVFKWRRERRR*
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spliced messenger RNA

>Ggra6747.t1 ID=Ggra6747.t1|Name=Ggra6747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000056_pilon:341931..342659- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAGCTTCAGCAAGAACATCCTTCCTCGCCGAGAGCATCGAGAGAG
AGCTCAACCCGCCCTACGTATCCAGAAGCATGGTTTGCTCGAAAAGAAGA
AGGACTACAAACTGCGCGCAAAGGATCACAACCGAAAGCGTTTACGCGTC
AAGATATTGCGGGAAAAGGCCGCCTTTCGAAATCCAGATGAGTTTTACTA
CGGCATGATAAATTCATCTACGAGTGGAGGGAGAGTCAAAAGAGTGCTCA
ACGCCAAGGAAAAGGATGCCATTCCAATCGCGAACAGAGACCGCGAACAA
CGCATGCTGGCTGAAACACAGGACTCTAAGTATGTACAGCTCAAAAGTAG
CGCGGAAAGAGCTTCATTGCGCAGAATGAGAGATCGACTTCATTTCACAT
CTGCTGCGGCAGCGAGACCGAAGAATCACATCAAATTCGTACAAGACGTG
AACGGAGATGAGCAAGTCATCAACGTGGAAAGCCGAAAGCGAGGCCAAGA
TAAGTCAACTTCTTCAAAGGCTGACAAACTTGTGGCAAAGGAACAAGGAA
AAGCGTACAGGTACCTAAAACGAAGGGCGGAACGTCAAGAGAAACTAGAC
ACTGTCTTGACGGACATGCAGACTGCAAAGAATCTAATGTCAAAGGGAAG
GCGCTTTGTAGTACGTCGTGCCAATCCCGAGACGGGCGCGCCTCCAGTTT
TCAAGTGGCGAAGAGAGAGACGTCGATGA
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protein sequence of Ggra6747.t1

>Ggra6747.t1 ID=Ggra6747.t1|Name=Ggra6747.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=243bp
MSSFSKNILPRREHRERAQPALRIQKHGLLEKKKDYKLRAKDHNRKRLRV
KILREKAAFRNPDEFYYGMINSSTSGGRVKRVLNAKEKDAIPIANRDREQ
RMLAETQDSKYVQLKSSAERASLRRMRDRLHFTSAAAARPKNHIKFVQDV
NGDEQVINVESRKRGQDKSTSSKADKLVAKEQGKAYRYLKRRAERQEKLD
TVLTDMQTAKNLMSKGRRFVVRRANPETGAPPVFKWRRERRR*
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mRNA from alignment at tig00000056_pilon:341931..342659-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6747.t1 ID=Ggra6747.t1|Name=Ggra6747.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000056_pilon:341931..342659- (Gracilaria gracilis GNS1m male)
ATGTCAAGCTTCAGCAAGAACATCCTTCCTCGCCGAGAGCATCGAGAGAG
AGCTCAACCCGCCCTACGTATCCAGAAGCATGGTTTGCTCGAAAAGAAGA
AGGACTACAAACTGCGCGCAAAGGATCACAACCGAAAGCGTTTACGCGTC
AAGATATTGCGGGAAAAGGCCGCCTTTCGAAATCCAGATGAGTTTTACTA
CGGCATGATAAATTCATCTACGAGTGGAGGGAGAGTCAAAAGAGTGCTCA
ACGCCAAGGAAAAGGATGCCATTCCAATCGCGAACAGAGACCGCGAACAA
CGCATGCTGGCTGAAACACAGGACTCTAAGTATGTACAGCTCAAAAGTAG
CGCGGAAAGAGCTTCATTGCGCAGAATGAGAGATCGACTTCATTTCACAT
CTGCTGCGGCAGCGAGACCGAAGAATCACATCAAATTCGTACAAGACGTG
AACGGAGATGAGCAAGTCATCAACGTGGAAAGCCGAAAGCGAGGCCAAGA
TAAGTCAACTTCTTCAAAGGCTGACAAACTTGTGGCAAAGGAACAAGGAA
AAGCGTACAGGTACCTAAAACGAAGGGCGGAACGTCAAGAGAAACTAGAC
ACTGTCTTGACGGACATGCAGACTGCAAAGAATCTAATGTCAAAGGGAAG
GCGCTTTGTAGTACGTCGTGCCAATCCCGAGACGGGCGCGCCTCCAGTTT
TCAAGTGGCGAAGAGAGAGACGTCGATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:341931..342659-

>Ggra6747.t1 ID=Ggra6747.t1|Name=Ggra6747.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=729bp|location=Sequence derived from alignment at tig00000056_pilon:341931..342659- (Gracilaria gracilis GNS1m male)
ATGTCAAGCTTCAGCAAGAACATCCTTCCTCGCCGAGAGCATCGAGAGAG
AGCTCAACCCGCCCTACGTATCCAGAAGCATGGTTTGCTCGAAAAGAAGA
AGGACTACAAACTGCGCGCAAAGGATCACAACCGAAAGCGTTTACGCGTC
AAGATATTGCGGGAAAAGGCCGCCTTTCGAAATCCAGATGAGTTTTACTA
CGGCATGATAAATTCATCTACGAGTGGAGGGAGAGTCAAAAGAGTGCTCA
ACGCCAAGGAAAAGGATGCCATTCCAATCGCGAACAGAGACCGCGAACAA
CGCATGCTGGCTGAAACACAGGACTCTAAGTATGTACAGCTCAAAAGTAG
CGCGGAAAGAGCTTCATTGCGCAGAATGAGAGATCGACTTCATTTCACAT
CTGCTGCGGCAGCGAGACCGAAGAATCACATCAAATTCGTACAAGACGTG
AACGGAGATGAGCAAGTCATCAACGTGGAAAGCCGAAAGCGAGGCCAAGA
TAAGTCAACTTCTTCAAAGGCTGACAAACTTGTGGCAAAGGAACAAGGAA
AAGCGTACAGGTACCTAAAACGAAGGGCGGAACGTCAAGAGAAACTAGAC
ACTGTCTTGACGGACATGCAGACTGCAAAGAATCTAATGTCAAAGGGAAG
GCGCTTTGTAGTACGTCGTGCCAATCCCGAGACGGGCGCGCCTCCAGTTT
TCAAGTGGCGAAGAGAGAGACGTCGATGA
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