Ggra6746.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6746.t1
Unique Name	Ggra6746.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	588

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:340083..341846 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703263.1
Preferred name	OEP80
PFAMs	Bac_surface_Ag,POTRA
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07277
KEGG TC	1.B.33
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006996,GO:0008150,GO:0009507,GO:0009526,GO:0009536,GO:0009657,GO:0009658,GO:0009941,GO:0009987,GO:0016020,GO:0016043,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071840
Evalue	1.14e-25
EggNOG OGs	COG4775@1\|root,2QSQ3@2759\|Eukaryota
Description	chloroplast organization
COG category	M
BRITE	ko00000,ko02000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6746	Ggra6746	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 340083..341846 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6746.t1.start1	Ggra6746.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 340083..340085 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6746.t1.CDS1	Ggra6746.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 340083..341846 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6746.t1.exon1	Ggra6746.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 340083..341846 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6746.t1.stop1	Ggra6746.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 341844..341846 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6746.t1	Ggra6746.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 340083..341846 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:340083..341846+
coding sequence from alignment at tig00000056_pilon:340083..341846+

mRNA sequence

>Ggra6746.t1 ID=Ggra6746.t1|Name=Ggra6746.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=588bp
MAFLPPPPPPPSVPPLPGVPQPPIAGPNYYLPHRRRRTAAFSILNPIKPD
ASVLDIKDIEVLHPKKMPQKFIDDVIMPMKGRRIRGKELRERLVRANKWY
ADNSYVCSRIMVIRVPGILHRTLTLYCSEPVLDAVKIIPVDKDDKPDESA
RIKTRLRTICNALGVQLDEIFRWKPEGFGSLMALGIFDYADAEVSIITNH
RVELRLYLREKPSGKIEPGAGMSTDGRVFGDISVSDNNFMGRAQLLRVAW
QKRLDEGRSSGGIMFEDMRIGAAVPLSFKFKAYRDSSSKRGIPINRSARG
QGTYTGGRNDDRDFDTQLFYEKDRDGIMVDVGFRPKNTSMMFNLTPKYEF
IHPNLVDALSSTTTTQMVLQHSYTHVTRLPVELPRAGHLARIEHSAGTVL
QSSARPFQKAIFSASQYFGVKRFASVALAGTLGFGSDNLPWHEQKSLGGH
TNVRGYSYGELGRHKSYATARAELRVPLTHLEAAAGPQAPADEKEKGGDS
KDEQQKKSSDKQGGEESQKLSGVDRKLPPLVGVVFGDVALTNSSKREVLG
TSYGVGVRIAGIVSVDWTRTVEDGRSSVHVGLVDRSW*

spliced messenger RNA

>Ggra6746.t1 ID=Ggra6746.t1|Name=Ggra6746.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1764bp|location=Sequence derived from alignment at tig00000056_pilon:340083..341846+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTTCTCCCTCCTCCCCCTCCGCCGCCATCCGTGCCGCCTCTGCC
AGGCGTCCCTCAGCCCCCCATTGCTGGCCCAAACTACTACCTCCCCCACC
GCCGCCGCCGCACCGCGGCCTTCTCCATCCTCAATCCCATCAAACCAGAT
GCGTCAGTCTTGGATATCAAGGACATCGAAGTTCTTCATCCCAAAAAGAT
GCCGCAGAAATTCATCGACGACGTCATCATGCCCATGAAGGGCCGTCGCA
TCCGCGGCAAGGAGCTCAGAGAGAGGCTTGTCCGCGCCAACAAGTGGTAC
GCAGACAATTCTTACGTTTGCTCCAGGATCATGGTCATCCGGGTCCCCGG
CATACTCCATAGAACCCTCACTCTCTATTGTTCAGAGCCTGTACTCGACG
CTGTGAAGATCATCCCGGTTGACAAAGATGACAAGCCTGATGAAAGCGCT
CGTATTAAGACGCGCCTGCGCACCATATGCAACGCACTTGGTGTGCAGCT
TGATGAGATCTTCCGATGGAAGCCCGAGGGATTCGGCTCGCTCATGGCGC
TGGGTATTTTCGACTACGCAGACGCTGAGGTAAGCATAATTACCAATCAT
AGGGTTGAGCTTCGCTTGTATCTCCGCGAGAAGCCAAGCGGTAAAATAGA
ACCAGGTGCGGGCATGTCTACAGATGGCCGTGTTTTTGGCGATATAAGTG
TGTCGGACAACAATTTTATGGGTCGTGCGCAACTATTACGGGTTGCTTGG
CAAAAGAGACTTGACGAAGGGCGCTCATCGGGTGGTATCATGTTCGAAGA
CATGAGAATAGGAGCGGCTGTGCCCCTTTCCTTCAAATTCAAAGCCTATC
GCGATTCAAGTTCAAAGCGTGGAATTCCTATAAATCGTTCGGCGAGAGGT
CAGGGTACCTATACTGGAGGCCGCAACGACGACCGAGACTTTGACACGCA
GTTGTTCTACGAAAAGGACAGAGATGGCATCATGGTAGACGTTGGCTTCC
GTCCGAAAAACACGTCTATGATGTTCAACCTCACTCCGAAGTATGAGTTC
ATCCATCCTAATTTGGTTGACGCCTTGAGCTCGACCACCACAACCCAAAT
GGTACTACAACATTCATACACACATGTAACGAGATTACCGGTGGAGCTTC
CGCGTGCTGGCCATCTTGCCAGAATCGAACACAGCGCAGGTACGGTACTT
CAGTCCTCAGCTCGTCCATTTCAGAAAGCAATTTTCTCGGCCAGTCAGTA
CTTTGGTGTGAAGCGTTTTGCTTCTGTCGCACTGGCTGGGACTTTGGGCT
TCGGATCCGACAATCTCCCCTGGCACGAGCAGAAATCTCTTGGCGGTCAT
ACCAATGTAAGAGGTTATTCATATGGGGAGTTGGGGAGACATAAATCTTA
CGCCACTGCTCGCGCCGAGCTACGTGTTCCGCTCACACACTTGGAGGCGG
CAGCAGGGCCTCAAGCACCCGCGGATGAAAAAGAGAAAGGGGGTGATTCG
AAGGATGAGCAACAGAAAAAGAGCAGTGACAAACAAGGTGGAGAGGAGTC
TCAGAAACTGTCTGGTGTGGACAGAAAATTGCCACCGCTTGTTGGAGTTG
TATTTGGGGATGTTGCGCTAACGAATTCCAGTAAGCGAGAAGTTCTAGGA
ACGAGTTATGGAGTCGGAGTTCGCATCGCTGGTATCGTGTCTGTAGACTG
GACGAGAACAGTGGAGGATGGGCGGTCTAGCGTTCACGTAGGGCTTGTAG
ATCGCAGTTGGTAA

protein sequence of Ggra6746.t1

>Ggra6746.t1 ID=Ggra6746.t1|Name=Ggra6746.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=588bp
MAFLPPPPPPPSVPPLPGVPQPPIAGPNYYLPHRRRRTAAFSILNPIKPD
ASVLDIKDIEVLHPKKMPQKFIDDVIMPMKGRRIRGKELRERLVRANKWY
ADNSYVCSRIMVIRVPGILHRTLTLYCSEPVLDAVKIIPVDKDDKPDESA
RIKTRLRTICNALGVQLDEIFRWKPEGFGSLMALGIFDYADAEVSIITNH
RVELRLYLREKPSGKIEPGAGMSTDGRVFGDISVSDNNFMGRAQLLRVAW
QKRLDEGRSSGGIMFEDMRIGAAVPLSFKFKAYRDSSSKRGIPINRSARG
QGTYTGGRNDDRDFDTQLFYEKDRDGIMVDVGFRPKNTSMMFNLTPKYEF
IHPNLVDALSSTTTTQMVLQHSYTHVTRLPVELPRAGHLARIEHSAGTVL
QSSARPFQKAIFSASQYFGVKRFASVALAGTLGFGSDNLPWHEQKSLGGH
TNVRGYSYGELGRHKSYATARAELRVPLTHLEAAAGPQAPADEKEKGGDS
KDEQQKKSSDKQGGEESQKLSGVDRKLPPLVGVVFGDVALTNSSKREVLG
TSYGVGVRIAGIVSVDWTRTVEDGRSSVHVGLVDRSW*

mRNA from alignment at tig00000056_pilon:340083..341846+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6746.t1 ID=Ggra6746.t1|Name=Ggra6746.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1764bp|location=Sequence derived from alignment at tig00000056_pilon:340083..341846+ (Gracilaria gracilis GNS1m male)
ATGGCCTTTCTCCCTCCTCCCCCTCCGCCGCCATCCGTGCCGCCTCTGCC
AGGCGTCCCTCAGCCCCCCATTGCTGGCCCAAACTACTACCTCCCCCACC
GCCGCCGCCGCACCGCGGCCTTCTCCATCCTCAATCCCATCAAACCAGAT
GCGTCAGTCTTGGATATCAAGGACATCGAAGTTCTTCATCCCAAAAAGAT
GCCGCAGAAATTCATCGACGACGTCATCATGCCCATGAAGGGCCGTCGCA
TCCGCGGCAAGGAGCTCAGAGAGAGGCTTGTCCGCGCCAACAAGTGGTAC
GCAGACAATTCTTACGTTTGCTCCAGGATCATGGTCATCCGGGTCCCCGG
CATACTCCATAGAACCCTCACTCTCTATTGTTCAGAGCCTGTACTCGACG
CTGTGAAGATCATCCCGGTTGACAAAGATGACAAGCCTGATGAAAGCGCT
CGTATTAAGACGCGCCTGCGCACCATATGCAACGCACTTGGTGTGCAGCT
TGATGAGATCTTCCGATGGAAGCCCGAGGGATTCGGCTCGCTCATGGCGC
TGGGTATTTTCGACTACGCAGACGCTGAGGTAAGCATAATTACCAATCAT
AGGGTTGAGCTTCGCTTGTATCTCCGCGAGAAGCCAAGCGGTAAAATAGA
ACCAGGTGCGGGCATGTCTACAGATGGCCGTGTTTTTGGCGATATAAGTG
TGTCGGACAACAATTTTATGGGTCGTGCGCAACTATTACGGGTTGCTTGG
CAAAAGAGACTTGACGAAGGGCGCTCATCGGGTGGTATCATGTTCGAAGA
CATGAGAATAGGAGCGGCTGTGCCCCTTTCCTTCAAATTCAAAGCCTATC
GCGATTCAAGTTCAAAGCGTGGAATTCCTATAAATCGTTCGGCGAGAGGT
CAGGGTACCTATACTGGAGGCCGCAACGACGACCGAGACTTTGACACGCA
GTTGTTCTACGAAAAGGACAGAGATGGCATCATGGTAGACGTTGGCTTCC
GTCCGAAAAACACGTCTATGATGTTCAACCTCACTCCGAAGTATGAGTTC
ATCCATCCTAATTTGGTTGACGCCTTGAGCTCGACCACCACAACCCAAAT
GGTACTACAACATTCATACACACATGTAACGAGATTACCGGTGGAGCTTC
CGCGTGCTGGCCATCTTGCCAGAATCGAACACAGCGCAGGTACGGTACTT
CAGTCCTCAGCTCGTCCATTTCAGAAAGCAATTTTCTCGGCCAGTCAGTA
CTTTGGTGTGAAGCGTTTTGCTTCTGTCGCACTGGCTGGGACTTTGGGCT
TCGGATCCGACAATCTCCCCTGGCACGAGCAGAAATCTCTTGGCGGTCAT
ACCAATGTAAGAGGTTATTCATATGGGGAGTTGGGGAGACATAAATCTTA
CGCCACTGCTCGCGCCGAGCTACGTGTTCCGCTCACACACTTGGAGGCGG
CAGCAGGGCCTCAAGCACCCGCGGATGAAAAAGAGAAAGGGGGTGATTCG
AAGGATGAGCAACAGAAAAAGAGCAGTGACAAACAAGGTGGAGAGGAGTC
TCAGAAACTGTCTGGTGTGGACAGAAAATTGCCACCGCTTGTTGGAGTTG
TATTTGGGGATGTTGCGCTAACGAATTCCAGTAAGCGAGAAGTTCTAGGA
ACGAGTTATGGAGTCGGAGTTCGCATCGCTGGTATCGTGTCTGTAGACTG
GACGAGAACAGTGGAGGATGGGCGGTCTAGCGTTCACGTAGGGCTTGTAG
ATCGCAGTTGGTAA

Coding sequence (CDS) from alignment at tig00000056_pilon:340083..341846+

>Ggra6746.t1 ID=Ggra6746.t1|Name=Ggra6746.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1764bp|location=Sequence derived from alignment at tig00000056_pilon:340083..341846+ (Gracilaria gracilis GNS1m male)
ATGGCCTTTCTCCCTCCTCCCCCTCCGCCGCCATCCGTGCCGCCTCTGCC
AGGCGTCCCTCAGCCCCCCATTGCTGGCCCAAACTACTACCTCCCCCACC
GCCGCCGCCGCACCGCGGCCTTCTCCATCCTCAATCCCATCAAACCAGAT
GCGTCAGTCTTGGATATCAAGGACATCGAAGTTCTTCATCCCAAAAAGAT
GCCGCAGAAATTCATCGACGACGTCATCATGCCCATGAAGGGCCGTCGCA
TCCGCGGCAAGGAGCTCAGAGAGAGGCTTGTCCGCGCCAACAAGTGGTAC
GCAGACAATTCTTACGTTTGCTCCAGGATCATGGTCATCCGGGTCCCCGG
CATACTCCATAGAACCCTCACTCTCTATTGTTCAGAGCCTGTACTCGACG
CTGTGAAGATCATCCCGGTTGACAAAGATGACAAGCCTGATGAAAGCGCT
CGTATTAAGACGCGCCTGCGCACCATATGCAACGCACTTGGTGTGCAGCT
TGATGAGATCTTCCGATGGAAGCCCGAGGGATTCGGCTCGCTCATGGCGC
TGGGTATTTTCGACTACGCAGACGCTGAGGTAAGCATAATTACCAATCAT
AGGGTTGAGCTTCGCTTGTATCTCCGCGAGAAGCCAAGCGGTAAAATAGA
ACCAGGTGCGGGCATGTCTACAGATGGCCGTGTTTTTGGCGATATAAGTG
TGTCGGACAACAATTTTATGGGTCGTGCGCAACTATTACGGGTTGCTTGG
CAAAAGAGACTTGACGAAGGGCGCTCATCGGGTGGTATCATGTTCGAAGA
CATGAGAATAGGAGCGGCTGTGCCCCTTTCCTTCAAATTCAAAGCCTATC
GCGATTCAAGTTCAAAGCGTGGAATTCCTATAAATCGTTCGGCGAGAGGT
CAGGGTACCTATACTGGAGGCCGCAACGACGACCGAGACTTTGACACGCA
GTTGTTCTACGAAAAGGACAGAGATGGCATCATGGTAGACGTTGGCTTCC
GTCCGAAAAACACGTCTATGATGTTCAACCTCACTCCGAAGTATGAGTTC
ATCCATCCTAATTTGGTTGACGCCTTGAGCTCGACCACCACAACCCAAAT
GGTACTACAACATTCATACACACATGTAACGAGATTACCGGTGGAGCTTC
CGCGTGCTGGCCATCTTGCCAGAATCGAACACAGCGCAGGTACGGTACTT
CAGTCCTCAGCTCGTCCATTTCAGAAAGCAATTTTCTCGGCCAGTCAGTA
CTTTGGTGTGAAGCGTTTTGCTTCTGTCGCACTGGCTGGGACTTTGGGCT
TCGGATCCGACAATCTCCCCTGGCACGAGCAGAAATCTCTTGGCGGTCAT
ACCAATGTAAGAGGTTATTCATATGGGGAGTTGGGGAGACATAAATCTTA
CGCCACTGCTCGCGCCGAGCTACGTGTTCCGCTCACACACTTGGAGGCGG
CAGCAGGGCCTCAAGCACCCGCGGATGAAAAAGAGAAAGGGGGTGATTCG
AAGGATGAGCAACAGAAAAAGAGCAGTGACAAACAAGGTGGAGAGGAGTC
TCAGAAACTGTCTGGTGTGGACAGAAAATTGCCACCGCTTGTTGGAGTTG
TATTTGGGGATGTTGCGCTAACGAATTCCAGTAAGCGAGAAGTTCTAGGA
ACGAGTTATGGAGTCGGAGTTCGCATCGCTGGTATCGTGTCTGTAGACTG
GACGAGAACAGTGGAGGATGGGCGGTCTAGCGTTCACGTAGGGCTTGTAG
ATCGCAGTTGGTAA