Ggra6745.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6745.t1
Unique Name	Ggra6745.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	560

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:337900..339579 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706889.1
Max annot lvl	2759\|Eukaryota
Evalue	1.75e-46
EggNOG OGs	2D0MM@1\|root,2SEQG@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6745	Ggra6745	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 337900..339579 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6745.t1.stop1	Ggra6745.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 337900..337902 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6745.t1.CDS1	Ggra6745.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 337900..339579 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6745.t1.exon1	Ggra6745.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 337900..339579 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6745.t1.start1	Ggra6745.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 339577..339579 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6745.t1	Ggra6745.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 337900..339579 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:337900..339579-
coding sequence from alignment at tig00000056_pilon:337900..339579-

mRNA sequence

>Ggra6745.t1 ID=Ggra6745.t1|Name=Ggra6745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=560bp
MTQTTDHPPGDLPPPKRRKVDDDRPPSPVNHPQPPQNGQPDHPPPPLPQD
PPLEPPQDVHSPPPPLEAPHPQHVAHDPSPPPPPAERAPPNLDPLDDVRP
PRRQDIQDDEPDATLNQPVSVDNPQMAPTGLTPEVDAVLAKIFASGLFER
KDVDGRALDFLASVSPQLALAALEDIQRRDFSTVRNKPAFIMSIFKRVVN
AGGSVQSSAPGPSFQPTSVPASALAHLPPAVSDALQRVFQSGVCHPSLFD
DRAMDILVDLAEPDAVRALSEFAAMEPGRVRNPSAFWMGLARKYKGHSRA
PGGRAGPSYDTTTASAYGSYDGYNARRPAVSSVMLEQRLDELAASGHLPR
NALDDRAMDALRRLPEQDALGVLAELPEPARVRNMSAYVMGLCKKFAAGE
ARSLSQRGSYNTGGYGGYGGYGGYGASGYGGYGGYAHANAHAGYAAGYGA
PGGYGSQYGAAVPGAYGTHPVDDNTRARETREALETMDPSVRERFYQMTD
QGVITESSFDARAISAMQNLRAEDACAALDELAASEPGRIHNISAYFMGL
AKKFGRSSM*

spliced messenger RNA

>Ggra6745.t1 ID=Ggra6745.t1|Name=Ggra6745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000056_pilon:337900..339579- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCAGACCACCGACCATCCCCCGGGCGACCTTCCCCCGCCCAAGCG
GCGCAAGGTCGATGACGATCGTCCCCCCAGCCCAGTCAACCACCCTCAGC
CGCCTCAAAACGGGCAGCCCGATCATCCGCCTCCCCCGCTCCCACAAGAC
CCTCCCCTCGAACCTCCCCAGGATGTCCACTCACCGCCACCCCCTCTAGA
AGCTCCCCATCCACAACACGTCGCTCACGACCCTTCCCCCCCTCCGCCAC
CTGCCGAACGTGCTCCGCCCAATTTGGATCCGCTCGATGATGTGCGCCCA
CCCCGCAGACAGGACATACAAGATGATGAGCCCGACGCAACCCTTAACCA
ACCCGTCTCCGTGGACAACCCACAGATGGCTCCCACGGGTCTCACACCCG
AAGTTGACGCCGTTCTCGCAAAGATCTTCGCCTCTGGCTTGTTCGAAAGG
AAGGATGTCGACGGCAGAGCACTGGACTTTCTCGCCAGCGTCTCCCCCCA
GTTGGCGTTAGCGGCCTTGGAAGATATTCAACGCCGCGACTTTTCCACCG
TTCGAAACAAACCCGCGTTCATCATGAGTATATTCAAACGGGTTGTCAAC
GCCGGCGGATCGGTTCAGTCTTCCGCTCCCGGTCCCTCCTTCCAACCAAC
ATCCGTTCCAGCTTCCGCATTAGCTCATCTTCCGCCTGCAGTCTCGGATG
CCTTGCAAAGGGTTTTTCAATCCGGGGTGTGCCACCCTAGTCTTTTCGAC
GATCGTGCAATGGATATTCTAGTAGACTTAGCGGAACCTGACGCTGTTCG
CGCTCTGTCTGAGTTTGCCGCCATGGAGCCCGGACGAGTACGAAATCCCT
CCGCGTTCTGGATGGGGTTGGCGAGAAAGTACAAAGGCCACTCAAGAGCA
CCAGGTGGGCGCGCTGGTCCTTCATACGATACAACTACTGCTTCAGCCTA
CGGTTCTTACGATGGTTATAACGCACGGCGCCCCGCTGTTAGTTCCGTAA
TGTTAGAGCAACGATTGGACGAACTTGCTGCCTCCGGCCATCTGCCAAGA
AATGCATTAGATGATCGTGCAATGGACGCTCTTCGACGCCTCCCAGAGCA
AGACGCATTAGGAGTCTTGGCAGAACTGCCAGAACCTGCGCGCGTACGCA
ACATGAGTGCTTACGTAATGGGTCTTTGCAAGAAGTTTGCGGCAGGAGAG
GCGCGCTCCCTATCCCAGAGAGGTAGTTACAATACTGGTGGCTACGGTGG
CTATGGAGGCTACGGCGGATATGGAGCGTCCGGATATGGTGGGTATGGAG
GCTATGCGCACGCAAACGCTCATGCAGGGTACGCTGCGGGATACGGCGCT
CCCGGAGGATACGGAAGCCAATATGGCGCAGCGGTCCCTGGGGCATACGG
TACCCACCCAGTTGATGACAACACGAGAGCTAGGGAAACGCGAGAAGCTC
TTGAGACAATGGACCCTTCTGTGCGGGAACGCTTTTACCAAATGACAGAT
CAAGGGGTCATCACTGAATCTTCATTTGATGCAAGGGCTATTAGTGCAAT
GCAGAACTTAAGGGCGGAGGACGCCTGTGCAGCCCTCGACGAACTAGCCG
CAAGCGAGCCCGGGAGAATTCACAATATCAGCGCGTATTTCATGGGCTTG
GCCAAGAAATTCGGGCGGTCCTCTATGTGA

protein sequence of Ggra6745.t1

>Ggra6745.t1 ID=Ggra6745.t1|Name=Ggra6745.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=560bp
MTQTTDHPPGDLPPPKRRKVDDDRPPSPVNHPQPPQNGQPDHPPPPLPQD
PPLEPPQDVHSPPPPLEAPHPQHVAHDPSPPPPPAERAPPNLDPLDDVRP
PRRQDIQDDEPDATLNQPVSVDNPQMAPTGLTPEVDAVLAKIFASGLFER
KDVDGRALDFLASVSPQLALAALEDIQRRDFSTVRNKPAFIMSIFKRVVN
AGGSVQSSAPGPSFQPTSVPASALAHLPPAVSDALQRVFQSGVCHPSLFD
DRAMDILVDLAEPDAVRALSEFAAMEPGRVRNPSAFWMGLARKYKGHSRA
PGGRAGPSYDTTTASAYGSYDGYNARRPAVSSVMLEQRLDELAASGHLPR
NALDDRAMDALRRLPEQDALGVLAELPEPARVRNMSAYVMGLCKKFAAGE
ARSLSQRGSYNTGGYGGYGGYGGYGASGYGGYGGYAHANAHAGYAAGYGA
PGGYGSQYGAAVPGAYGTHPVDDNTRARETREALETMDPSVRERFYQMTD
QGVITESSFDARAISAMQNLRAEDACAALDELAASEPGRIHNISAYFMGL
AKKFGRSSM*

mRNA from alignment at tig00000056_pilon:337900..339579-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6745.t1 ID=Ggra6745.t1|Name=Ggra6745.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1680bp|location=Sequence derived from alignment at tig00000056_pilon:337900..339579- (Gracilaria gracilis GNS1m male)
ATGACGCAGACCACCGACCATCCCCCGGGCGACCTTCCCCCGCCCAAGCG
GCGCAAGGTCGATGACGATCGTCCCCCCAGCCCAGTCAACCACCCTCAGC
CGCCTCAAAACGGGCAGCCCGATCATCCGCCTCCCCCGCTCCCACAAGAC
CCTCCCCTCGAACCTCCCCAGGATGTCCACTCACCGCCACCCCCTCTAGA
AGCTCCCCATCCACAACACGTCGCTCACGACCCTTCCCCCCCTCCGCCAC
CTGCCGAACGTGCTCCGCCCAATTTGGATCCGCTCGATGATGTGCGCCCA
CCCCGCAGACAGGACATACAAGATGATGAGCCCGACGCAACCCTTAACCA
ACCCGTCTCCGTGGACAACCCACAGATGGCTCCCACGGGTCTCACACCCG
AAGTTGACGCCGTTCTCGCAAAGATCTTCGCCTCTGGCTTGTTCGAAAGG
AAGGATGTCGACGGCAGAGCACTGGACTTTCTCGCCAGCGTCTCCCCCCA
GTTGGCGTTAGCGGCCTTGGAAGATATTCAACGCCGCGACTTTTCCACCG
TTCGAAACAAACCCGCGTTCATCATGAGTATATTCAAACGGGTTGTCAAC
GCCGGCGGATCGGTTCAGTCTTCCGCTCCCGGTCCCTCCTTCCAACCAAC
ATCCGTTCCAGCTTCCGCATTAGCTCATCTTCCGCCTGCAGTCTCGGATG
CCTTGCAAAGGGTTTTTCAATCCGGGGTGTGCCACCCTAGTCTTTTCGAC
GATCGTGCAATGGATATTCTAGTAGACTTAGCGGAACCTGACGCTGTTCG
CGCTCTGTCTGAGTTTGCCGCCATGGAGCCCGGACGAGTACGAAATCCCT
CCGCGTTCTGGATGGGGTTGGCGAGAAAGTACAAAGGCCACTCAAGAGCA
CCAGGTGGGCGCGCTGGTCCTTCATACGATACAACTACTGCTTCAGCCTA
CGGTTCTTACGATGGTTATAACGCACGGCGCCCCGCTGTTAGTTCCGTAA
TGTTAGAGCAACGATTGGACGAACTTGCTGCCTCCGGCCATCTGCCAAGA
AATGCATTAGATGATCGTGCAATGGACGCTCTTCGACGCCTCCCAGAGCA
AGACGCATTAGGAGTCTTGGCAGAACTGCCAGAACCTGCGCGCGTACGCA
ACATGAGTGCTTACGTAATGGGTCTTTGCAAGAAGTTTGCGGCAGGAGAG
GCGCGCTCCCTATCCCAGAGAGGTAGTTACAATACTGGTGGCTACGGTGG
CTATGGAGGCTACGGCGGATATGGAGCGTCCGGATATGGTGGGTATGGAG
GCTATGCGCACGCAAACGCTCATGCAGGGTACGCTGCGGGATACGGCGCT
CCCGGAGGATACGGAAGCCAATATGGCGCAGCGGTCCCTGGGGCATACGG
TACCCACCCAGTTGATGACAACACGAGAGCTAGGGAAACGCGAGAAGCTC
TTGAGACAATGGACCCTTCTGTGCGGGAACGCTTTTACCAAATGACAGAT
CAAGGGGTCATCACTGAATCTTCATTTGATGCAAGGGCTATTAGTGCAAT
GCAGAACTTAAGGGCGGAGGACGCCTGTGCAGCCCTCGACGAACTAGCCG
CAAGCGAGCCCGGGAGAATTCACAATATCAGCGCGTATTTCATGGGCTTG
GCCAAGAAATTCGGGCGGTCCTCTATGTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:337900..339579-

>Ggra6745.t1 ID=Ggra6745.t1|Name=Ggra6745.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1680bp|location=Sequence derived from alignment at tig00000056_pilon:337900..339579- (Gracilaria gracilis GNS1m male)
ATGACGCAGACCACCGACCATCCCCCGGGCGACCTTCCCCCGCCCAAGCG
GCGCAAGGTCGATGACGATCGTCCCCCCAGCCCAGTCAACCACCCTCAGC
CGCCTCAAAACGGGCAGCCCGATCATCCGCCTCCCCCGCTCCCACAAGAC
CCTCCCCTCGAACCTCCCCAGGATGTCCACTCACCGCCACCCCCTCTAGA
AGCTCCCCATCCACAACACGTCGCTCACGACCCTTCCCCCCCTCCGCCAC
CTGCCGAACGTGCTCCGCCCAATTTGGATCCGCTCGATGATGTGCGCCCA
CCCCGCAGACAGGACATACAAGATGATGAGCCCGACGCAACCCTTAACCA
ACCCGTCTCCGTGGACAACCCACAGATGGCTCCCACGGGTCTCACACCCG
AAGTTGACGCCGTTCTCGCAAAGATCTTCGCCTCTGGCTTGTTCGAAAGG
AAGGATGTCGACGGCAGAGCACTGGACTTTCTCGCCAGCGTCTCCCCCCA
GTTGGCGTTAGCGGCCTTGGAAGATATTCAACGCCGCGACTTTTCCACCG
TTCGAAACAAACCCGCGTTCATCATGAGTATATTCAAACGGGTTGTCAAC
GCCGGCGGATCGGTTCAGTCTTCCGCTCCCGGTCCCTCCTTCCAACCAAC
ATCCGTTCCAGCTTCCGCATTAGCTCATCTTCCGCCTGCAGTCTCGGATG
CCTTGCAAAGGGTTTTTCAATCCGGGGTGTGCCACCCTAGTCTTTTCGAC
GATCGTGCAATGGATATTCTAGTAGACTTAGCGGAACCTGACGCTGTTCG
CGCTCTGTCTGAGTTTGCCGCCATGGAGCCCGGACGAGTACGAAATCCCT
CCGCGTTCTGGATGGGGTTGGCGAGAAAGTACAAAGGCCACTCAAGAGCA
CCAGGTGGGCGCGCTGGTCCTTCATACGATACAACTACTGCTTCAGCCTA
CGGTTCTTACGATGGTTATAACGCACGGCGCCCCGCTGTTAGTTCCGTAA
TGTTAGAGCAACGATTGGACGAACTTGCTGCCTCCGGCCATCTGCCAAGA
AATGCATTAGATGATCGTGCAATGGACGCTCTTCGACGCCTCCCAGAGCA
AGACGCATTAGGAGTCTTGGCAGAACTGCCAGAACCTGCGCGCGTACGCA
ACATGAGTGCTTACGTAATGGGTCTTTGCAAGAAGTTTGCGGCAGGAGAG
GCGCGCTCCCTATCCCAGAGAGGTAGTTACAATACTGGTGGCTACGGTGG
CTATGGAGGCTACGGCGGATATGGAGCGTCCGGATATGGTGGGTATGGAG
GCTATGCGCACGCAAACGCTCATGCAGGGTACGCTGCGGGATACGGCGCT
CCCGGAGGATACGGAAGCCAATATGGCGCAGCGGTCCCTGGGGCATACGG
TACCCACCCAGTTGATGACAACACGAGAGCTAGGGAAACGCGAGAAGCTC
TTGAGACAATGGACCCTTCTGTGCGGGAACGCTTTTACCAAATGACAGAT
CAAGGGGTCATCACTGAATCTTCATTTGATGCAAGGGCTATTAGTGCAAT
GCAGAACTTAAGGGCGGAGGACGCCTGTGCAGCCCTCGACGAACTAGCCG
CAAGCGAGCCCGGGAGAATTCACAATATCAGCGCGTATTTCATGGGCTTG
GCCAAGAAATTCGGGCGGTCCTCTATGTGA