Ggra6741.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6741.t1
Unique NameGgra6741.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length75
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:328270..328586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6500.XP_005096601.1
Max annot lvl33208|Metazoa
Evalue1.81e-06
EggNOG OGs2CMFC@1|root,2SAT8@2759|Eukaryota,3AASV@33154|Opisthokonta,3BU88@33208|Metazoa,3DBDZ@33213|Bilateria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6741Ggra6741Gracilaria gracilis GNS1m malegenetig00000056_pilon 328270..328586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6741.t1Ggra6741.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 328270..328586 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6741.t1.start1Ggra6741.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 328270..328272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6741.t1.CDS1Ggra6741.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 328270..328283 +
Ggra6741.t1.CDS2Ggra6741.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 328376..328586 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6741.t1.exon1Ggra6741.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 328270..328283 +
Ggra6741.t1.exon2Ggra6741.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 328376..328586 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6741.t1.intron1Ggra6741.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 328284..328375 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6741.t1.stop1Ggra6741.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 328584..328586 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6741.t1 ID=Ggra6741.t1|Name=Ggra6741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=75bp
MSLQDAHESLGTVYFEDDFQDAKIATQQTLQAFETLLHKSTPQQREALLA
ANRPKMAQLEQQFKSLEHTLIHDD*
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spliced messenger RNA

>Ggra6741.t1 ID=Ggra6741.t1|Name=Ggra6741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=225bp|location=Sequence derived from alignment at tig00000056_pilon:328270..328586+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTTCAAGATGCACACGAGTCTCTAGGCACGGTCTACTTTGAGGA
CGATTTTCAGGACGCCAAGATCGCCACGCAACAAACTCTACAGGCATTCG
AAACTCTTTTGCACAAAAGCACGCCGCAACAACGAGAGGCCTTGCTCGCC
GCCAACCGTCCGAAGATGGCCCAACTTGAACAACAATTCAAATCACTTGA
ACATACGCTCATCCACGACGATTAA
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protein sequence of Ggra6741.t1

>Ggra6741.t1 ID=Ggra6741.t1|Name=Ggra6741.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=75bp
MSLQDAHESLGTVYFEDDFQDAKIATQQTLQAFETLLHKSTPQQREALLA
ANRPKMAQLEQQFKSLEHTLIHDD*
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mRNA from alignment at tig00000056_pilon:328270..328586+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6741.t1 ID=Ggra6741.t1|Name=Ggra6741.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=317bp|location=Sequence derived from alignment at tig00000056_pilon:328270..328586+ (Gracilaria gracilis GNS1m male)
ATGAGTCTTCAAGAGTGAGTTCCGCCTTTGAGAGTGGCGTTCAGCGCATC
CTTCGTCAACTATTCATAACGATCACCATTCCATCAACCGCTCTAACAGT
TTGCAGTGCACACGAGTCTCTAGGCACGGTCTACTTTGAGGACGATTTTC
AGGACGCCAAGATCGCCACGCAACAAACTCTACAGGCATTCGAAACTCTT
TTGCACAAAAGCACGCCGCAACAACGAGAGGCCTTGCTCGCCGCCAACCG
TCCGAAGATGGCCCAACTTGAACAACAATTCAAATCACTTGAACATACGC
TCATCCACGACGATTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:328270..328586+

>Ggra6741.t1 ID=Ggra6741.t1|Name=Ggra6741.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=225bp|location=Sequence derived from alignment at tig00000056_pilon:328270..328586+ (Gracilaria gracilis GNS1m male)
ATGAGTCTTCAAGATGCACACGAGTCTCTAGGCACGGTCTACTTTGAGGA
CGATTTTCAGGACGCCAAGATCGCCACGCAACAAACTCTACAGGCATTCG
AAACTCTTTTGCACAAAAGCACGCCGCAACAACGAGAGGCCTTGCTCGCC
GCCAACCGTCCGAAGATGGCCCAACTTGAACAACAATTCAAATCACTTGA
ACATACGCTCATCCACGACGATTAA
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