Ggra6735.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6735.t1
Unique Name	Ggra6735.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	472

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:320934..322349 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	580340.Tlie_0746
Preferred name	prfA
PFAMs	PCRF,RF-1
Max annot lvl	508458\|Synergistetes
KEGG ko	ko:K02835
Evalue	3.33e-69
EggNOG OGs	COG0216@1\|root,COG0216@2\|Bacteria,3TA5F@508458\|Synergistetes
Description	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
COG category	J
BRITE	ko00000,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6735	Ggra6735	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 320934..322349 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6735.t1.start1	Ggra6735.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 320934..320936 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6735.t1.CDS1	Ggra6735.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 320934..322349 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6735.t1.exon1	Ggra6735.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 320934..322349 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6735.t1.stop1	Ggra6735.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 322347..322349 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6735.t1	Ggra6735.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 320934..322349 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:320934..322349+
coding sequence from alignment at tig00000056_pilon:320934..322349+

mRNA sequence

>Ggra6735.t1 ID=Ggra6735.t1|Name=Ggra6735.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=472bp
MLHVNGIRRHIFQLAGSTRPYGFLKWRARYRPCSTTSSSESPINALSSDD
VHNLFSHLAPLVLRSKTEHDTLAKQRSSNSFDASQQAQLNALAPIASLAE
SLDVLQTQLRDTFQILEESDHGSDSEMRQLALDEIQLLQAEKRQSASQIM
SYLLQQACNEDAEPDRSQSTPQSGTSSAILEIRAGAGGDEAALFVSVLFT
MYEKLAIRKGWKSRILSQSMTSLGGLRELILRITGPLVYETVRLEAGVHR
VQRVPATETSGRVHTSTASVAVLRDDAQLAKRFVLRESDVKFDVYRASGA
GGQHVNKTESAVRATHVPTGLVATSQEDRSQHRNKAIAMEALAARLAAKL
AAEEAAKRVSERRAQLGSTMGERSDRIRTYNYQQRRVTDHRIVPSTGLLE
IVPSARDVVGDKSVGLDNVLQGGAELERLIGGVSRARELETLHVLIGEAK
KLRSTTSDQLCDRFAVGMEAV*

spliced messenger RNA

>Ggra6735.t1 ID=Ggra6735.t1|Name=Ggra6735.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000056_pilon:320934..322349+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACATGTGAACGGAATCCGACGTCACATATTCCAACTTGCAGGCTC
TACAAGACCATATGGTTTTCTTAAATGGAGAGCCCGCTATAGACCTTGTT
CCACTACTTCCAGCTCGGAATCGCCTATAAACGCTCTGAGTTCTGATGAC
GTACACAATCTCTTTTCTCATTTAGCACCGCTCGTGTTACGGTCAAAAAC
AGAACATGACACCCTTGCCAAGCAGAGAAGCAGCAATTCTTTCGATGCAT
CGCAACAAGCTCAACTTAACGCACTCGCTCCAATTGCATCATTGGCTGAG
TCGTTGGATGTTCTTCAGACTCAACTTCGGGACACGTTCCAAATTTTGGA
AGAGAGCGATCACGGTTCTGATTCAGAGATGCGACAACTGGCTTTGGATG
AGATTCAGCTGTTACAAGCAGAGAAGCGCCAATCCGCATCACAAATAATG
TCATATCTACTGCAACAAGCATGCAATGAAGATGCAGAGCCCGATCGATC
GCAATCCACTCCTCAATCTGGAACAAGCAGCGCCATTCTGGAAATAAGGG
CAGGTGCTGGGGGAGATGAAGCGGCCCTATTCGTATCTGTTCTCTTCACA
ATGTACGAAAAGTTAGCTATACGTAAGGGATGGAAGTCGAGAATTTTGTC
CCAGTCGATGACTTCGTTGGGGGGACTACGTGAGTTGATTCTGCGAATCA
CCGGGCCCCTAGTTTACGAAACTGTGCGCCTCGAGGCCGGGGTTCATCGG
GTACAAAGAGTGCCCGCCACAGAGACAAGTGGTAGGGTTCATACGAGTAC
GGCAAGTGTAGCGGTGTTACGTGATGATGCGCAATTGGCCAAACGTTTTG
TTTTACGAGAAAGTGACGTGAAGTTTGACGTATACCGTGCAAGTGGGGCT
GGGGGTCAACATGTGAACAAAACTGAATCGGCTGTGCGGGCAACGCATGT
TCCAACTGGATTGGTGGCAACCAGCCAGGAGGATCGGTCGCAGCACCGCA
ACAAGGCAATTGCAATGGAAGCGTTAGCGGCTCGTCTAGCGGCCAAGCTC
GCAGCGGAAGAAGCTGCGAAAAGAGTGAGCGAACGTAGGGCGCAGCTGGG
CAGCACAATGGGCGAGCGAAGTGATAGAATACGAACATACAACTATCAGC
AGCGCAGGGTGACAGATCACCGTATCGTACCATCGACGGGGTTGCTGGAG
ATTGTGCCGTCTGCAAGAGACGTTGTTGGAGATAAGAGTGTGGGGCTAGA
TAATGTGCTACAGGGCGGTGCGGAACTTGAACGGTTAATCGGGGGCGTTT
CCAGAGCTCGAGAGCTAGAGACGTTACATGTGCTAATTGGAGAAGCAAAG
AAGTTGAGAAGCACGACTTCTGACCAGTTGTGTGATAGATTTGCAGTGGG
AATGGAAGCGGTATGA

protein sequence of Ggra6735.t1

>Ggra6735.t1 ID=Ggra6735.t1|Name=Ggra6735.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=472bp
MLHVNGIRRHIFQLAGSTRPYGFLKWRARYRPCSTTSSSESPINALSSDD
VHNLFSHLAPLVLRSKTEHDTLAKQRSSNSFDASQQAQLNALAPIASLAE
SLDVLQTQLRDTFQILEESDHGSDSEMRQLALDEIQLLQAEKRQSASQIM
SYLLQQACNEDAEPDRSQSTPQSGTSSAILEIRAGAGGDEAALFVSVLFT
MYEKLAIRKGWKSRILSQSMTSLGGLRELILRITGPLVYETVRLEAGVHR
VQRVPATETSGRVHTSTASVAVLRDDAQLAKRFVLRESDVKFDVYRASGA
GGQHVNKTESAVRATHVPTGLVATSQEDRSQHRNKAIAMEALAARLAAKL
AAEEAAKRVSERRAQLGSTMGERSDRIRTYNYQQRRVTDHRIVPSTGLLE
IVPSARDVVGDKSVGLDNVLQGGAELERLIGGVSRARELETLHVLIGEAK
KLRSTTSDQLCDRFAVGMEAV*

mRNA from alignment at tig00000056_pilon:320934..322349+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6735.t1 ID=Ggra6735.t1|Name=Ggra6735.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1416bp|location=Sequence derived from alignment at tig00000056_pilon:320934..322349+ (Gracilaria gracilis GNS1m male)
ATGTTACATGTGAACGGAATCCGACGTCACATATTCCAACTTGCAGGCTC
TACAAGACCATATGGTTTTCTTAAATGGAGAGCCCGCTATAGACCTTGTT
CCACTACTTCCAGCTCGGAATCGCCTATAAACGCTCTGAGTTCTGATGAC
GTACACAATCTCTTTTCTCATTTAGCACCGCTCGTGTTACGGTCAAAAAC
AGAACATGACACCCTTGCCAAGCAGAGAAGCAGCAATTCTTTCGATGCAT
CGCAACAAGCTCAACTTAACGCACTCGCTCCAATTGCATCATTGGCTGAG
TCGTTGGATGTTCTTCAGACTCAACTTCGGGACACGTTCCAAATTTTGGA
AGAGAGCGATCACGGTTCTGATTCAGAGATGCGACAACTGGCTTTGGATG
AGATTCAGCTGTTACAAGCAGAGAAGCGCCAATCCGCATCACAAATAATG
TCATATCTACTGCAACAAGCATGCAATGAAGATGCAGAGCCCGATCGATC
GCAATCCACTCCTCAATCTGGAACAAGCAGCGCCATTCTGGAAATAAGGG
CAGGTGCTGGGGGAGATGAAGCGGCCCTATTCGTATCTGTTCTCTTCACA
ATGTACGAAAAGTTAGCTATACGTAAGGGATGGAAGTCGAGAATTTTGTC
CCAGTCGATGACTTCGTTGGGGGGACTACGTGAGTTGATTCTGCGAATCA
CCGGGCCCCTAGTTTACGAAACTGTGCGCCTCGAGGCCGGGGTTCATCGG
GTACAAAGAGTGCCCGCCACAGAGACAAGTGGTAGGGTTCATACGAGTAC
GGCAAGTGTAGCGGTGTTACGTGATGATGCGCAATTGGCCAAACGTTTTG
TTTTACGAGAAAGTGACGTGAAGTTTGACGTATACCGTGCAAGTGGGGCT
GGGGGTCAACATGTGAACAAAACTGAATCGGCTGTGCGGGCAACGCATGT
TCCAACTGGATTGGTGGCAACCAGCCAGGAGGATCGGTCGCAGCACCGCA
ACAAGGCAATTGCAATGGAAGCGTTAGCGGCTCGTCTAGCGGCCAAGCTC
GCAGCGGAAGAAGCTGCGAAAAGAGTGAGCGAACGTAGGGCGCAGCTGGG
CAGCACAATGGGCGAGCGAAGTGATAGAATACGAACATACAACTATCAGC
AGCGCAGGGTGACAGATCACCGTATCGTACCATCGACGGGGTTGCTGGAG
ATTGTGCCGTCTGCAAGAGACGTTGTTGGAGATAAGAGTGTGGGGCTAGA
TAATGTGCTACAGGGCGGTGCGGAACTTGAACGGTTAATCGGGGGCGTTT
CCAGAGCTCGAGAGCTAGAGACGTTACATGTGCTAATTGGAGAAGCAAAG
AAGTTGAGAAGCACGACTTCTGACCAGTTGTGTGATAGATTTGCAGTGGG
AATGGAAGCGGTATGA

Coding sequence (CDS) from alignment at tig00000056_pilon:320934..322349+

>Ggra6735.t1 ID=Ggra6735.t1|Name=Ggra6735.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1416bp|location=Sequence derived from alignment at tig00000056_pilon:320934..322349+ (Gracilaria gracilis GNS1m male)
ATGTTACATGTGAACGGAATCCGACGTCACATATTCCAACTTGCAGGCTC
TACAAGACCATATGGTTTTCTTAAATGGAGAGCCCGCTATAGACCTTGTT
CCACTACTTCCAGCTCGGAATCGCCTATAAACGCTCTGAGTTCTGATGAC
GTACACAATCTCTTTTCTCATTTAGCACCGCTCGTGTTACGGTCAAAAAC
AGAACATGACACCCTTGCCAAGCAGAGAAGCAGCAATTCTTTCGATGCAT
CGCAACAAGCTCAACTTAACGCACTCGCTCCAATTGCATCATTGGCTGAG
TCGTTGGATGTTCTTCAGACTCAACTTCGGGACACGTTCCAAATTTTGGA
AGAGAGCGATCACGGTTCTGATTCAGAGATGCGACAACTGGCTTTGGATG
AGATTCAGCTGTTACAAGCAGAGAAGCGCCAATCCGCATCACAAATAATG
TCATATCTACTGCAACAAGCATGCAATGAAGATGCAGAGCCCGATCGATC
GCAATCCACTCCTCAATCTGGAACAAGCAGCGCCATTCTGGAAATAAGGG
CAGGTGCTGGGGGAGATGAAGCGGCCCTATTCGTATCTGTTCTCTTCACA
ATGTACGAAAAGTTAGCTATACGTAAGGGATGGAAGTCGAGAATTTTGTC
CCAGTCGATGACTTCGTTGGGGGGACTACGTGAGTTGATTCTGCGAATCA
CCGGGCCCCTAGTTTACGAAACTGTGCGCCTCGAGGCCGGGGTTCATCGG
GTACAAAGAGTGCCCGCCACAGAGACAAGTGGTAGGGTTCATACGAGTAC
GGCAAGTGTAGCGGTGTTACGTGATGATGCGCAATTGGCCAAACGTTTTG
TTTTACGAGAAAGTGACGTGAAGTTTGACGTATACCGTGCAAGTGGGGCT
GGGGGTCAACATGTGAACAAAACTGAATCGGCTGTGCGGGCAACGCATGT
TCCAACTGGATTGGTGGCAACCAGCCAGGAGGATCGGTCGCAGCACCGCA
ACAAGGCAATTGCAATGGAAGCGTTAGCGGCTCGTCTAGCGGCCAAGCTC
GCAGCGGAAGAAGCTGCGAAAAGAGTGAGCGAACGTAGGGCGCAGCTGGG
CAGCACAATGGGCGAGCGAAGTGATAGAATACGAACATACAACTATCAGC
AGCGCAGGGTGACAGATCACCGTATCGTACCATCGACGGGGTTGCTGGAG
ATTGTGCCGTCTGCAAGAGACGTTGTTGGAGATAAGAGTGTGGGGCTAGA
TAATGTGCTACAGGGCGGTGCGGAACTTGAACGGTTAATCGGGGGCGTTT
CCAGAGCTCGAGAGCTAGAGACGTTACATGTGCTAATTGGAGAAGCAAAG
AAGTTGAGAAGCACGACTTCTGACCAGTTGTGTGATAGATTTGCAGTGGG
AATGGAAGCGGTATGA