Ggra6731.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6731.t1
Unique NameGgra6731.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length355
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:315466..316530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G280
Preferred nameTAF7
PFAMsTAFII55_N
Max annot lvl2759|Eukaryota
KEGG koko:K03132,ko:K19721
KEGG Pathwayko03022,ko04974,map03022,map04974
GOsGO:0000003,GO:0000122,GO:0000123,GO:0000296,GO:0000428,GO:0001067,GO:0001932,GO:0001933,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005737,GO:0005794,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006469,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006928,GO:0007154,GO:0007165,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010639,GO:0010646,GO:0012505,GO:0014070,GO:0015696,GO:0015846,GO:0015893,GO:0016043,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0030234,GO:0030317,GO:0030518,GO:0030520,GO:0030522,GO:0030880,GO:0031056,GO:0031057,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032870,GO:0032991,GO:0033043,GO:0033044,GO:0033276,GO:0033673,GO:0033993,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0035034,GO:0035035,GO:0035065,GO:0035067,GO:0035097,GO:0035257,GO:0040011,GO:0042221,GO:0042325,GO:0042326,GO:0042493,GO:0042809,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043401,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0044703,GO:0044798,GO:0045859,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046966,GO:0046982,GO:0046983,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048583,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051123,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051338,GO:0051348,GO:0051427,GO:0051674,GO:0051704,GO:0051716,GO:0055029,GO:0060255,GO:0060260,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070461,GO:0070887,GO:0070897,GO:0071310,GO:0071339,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0097722,GO:0098772,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1901983,GO:1901984,GO:1902275,GO:1902493,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905268,GO:1990234,GO:2000112,GO:2000113,GO:2000142,GO:2000756,GO:2000757,GO:2001141,GO:2001251
Evalue6.11e-17
EggNOG OGsCOG5414@1|root,KOG4011@2759|Eukaryota
Descriptionhistone acetyltransferase binding
COG categoryK
BRITEko00000,ko00001,ko00536,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6731Ggra6731Gracilaria gracilis GNS1m malegenetig00000056_pilon 315466..316530 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6731.t1.start1Ggra6731.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 315466..315468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6731.t1.CDS1Ggra6731.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 315466..316530 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6731.t1.exon1Ggra6731.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 315466..316530 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6731.t1.stop1Ggra6731.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 316528..316530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6731.t1Ggra6731.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 315466..316530 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6731.t1 ID=Ggra6731.t1|Name=Ggra6731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=355bp
MNEQQYILRLPQPLVEPMRFALSSNKKREGAGEDRKPSKFQINFKDERNA
VFTIDGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETP
PKETYLPDGVTPATRGAAARLKPPKRFFTRDEVELIERRIKYVIDHKTSF
TQKKTQENPTEEEEVVIEEETVNAQPGKNAADPTKSAANGDATGTAPRAG
KPPLPSESLPAPMPTDVLPSPAVDTPGPYTPQPFTPQPFTPTPFTPIDTP
GPDGEEDEDDDDDDDDDDDDAINADMADMVDQIMEDKEDIAKRRIERLKL
DQSIKEQKAKIADLEEKAEKAPNPVLKKRFLSKRPELQTELTELEKRRQE
LGEE*
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spliced messenger RNA

>Ggra6731.t1 ID=Ggra6731.t1|Name=Ggra6731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000056_pilon:315466..316530+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGAACAACAGTACATTCTACGTCTTCCACAGCCGCTTGTTGAACC
CATGCGTTTTGCGCTTTCTAGCAACAAGAAACGCGAGGGCGCCGGTGAAG
ACCGTAAACCAAGCAAGTTCCAAATCAACTTCAAGGATGAGCGAAACGCT
GTGTTCACTATTGATGGTAAGGACTATCCAGCCTCTCTAATGGATTTGCC
TTGTATTGTTGAAACGCACAAGACGGCCGATAAACGTACATTTTACAAAA
GTGGAGATCTTCATCAAGTTCTGGTAGTTCGCATGCCGGACGAGACTCCT
CCCAAGGAAACGTACCTTCCGGATGGTGTTACACCAGCCACCAGAGGTGC
TGCAGCAAGGTTAAAGCCCCCGAAACGCTTCTTTACACGCGATGAAGTCG
AACTCATAGAGCGACGTATCAAATACGTCATCGATCATAAGACCAGTTTC
ACACAGAAGAAAACCCAAGAGAATCCTACAGAGGAGGAGGAAGTCGTTAT
TGAAGAAGAGACCGTCAACGCGCAACCCGGAAAGAATGCTGCCGATCCCA
CCAAGTCTGCTGCTAATGGCGATGCGACTGGCACAGCACCAAGAGCTGGA
AAGCCTCCATTACCGTCCGAGAGCCTGCCCGCACCCATGCCTACGGATGT
TCTTCCTTCACCAGCTGTAGATACACCCGGACCATACACACCGCAGCCGT
TTACGCCACAACCATTCACACCAACCCCGTTCACTCCTATTGATACACCA
GGTCCTGACGGGGAGGAAGATGAAgacgacgatgacgacgatgacgacga
cgacgatgatgCGATCAATGCTGATATGGCCGACATGGTCGATCAAATCA
TGGAGGACAAGGAAGATATCGCTAAAAGAAGAATAGAACGCCTGAAGCTC
GATCAAAGCATCAAGGAACAAAAAGCGAAGATTGCAGACTTGGAGGAAAA
GGCCGAGAAAGCGCCAAATCCAGTGTTGAAGAAGCGCTTCCTTTCGAAAC
GACCAGAGTTACAAACAGAGCTTACAGAGCTGGAAAAGCGGCGGCAGGAG
CTAGGAGAAGAGTGA
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protein sequence of Ggra6731.t1

>Ggra6731.t1 ID=Ggra6731.t1|Name=Ggra6731.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=355bp
MNEQQYILRLPQPLVEPMRFALSSNKKREGAGEDRKPSKFQINFKDERNA
VFTIDGKDYPASLMDLPCIVETHKTADKRTFYKSGDLHQVLVVRMPDETP
PKETYLPDGVTPATRGAAARLKPPKRFFTRDEVELIERRIKYVIDHKTSF
TQKKTQENPTEEEEVVIEEETVNAQPGKNAADPTKSAANGDATGTAPRAG
KPPLPSESLPAPMPTDVLPSPAVDTPGPYTPQPFTPQPFTPTPFTPIDTP
GPDGEEDEDDDDDDDDDDDDAINADMADMVDQIMEDKEDIAKRRIERLKL
DQSIKEQKAKIADLEEKAEKAPNPVLKKRFLSKRPELQTELTELEKRRQE
LGEE*
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mRNA from alignment at tig00000056_pilon:315466..316530+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6731.t1 ID=Ggra6731.t1|Name=Ggra6731.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1065bp|location=Sequence derived from alignment at tig00000056_pilon:315466..316530+ (Gracilaria gracilis GNS1m male)
ATGAATGAACAACAGTACATTCTACGTCTTCCACAGCCGCTTGTTGAACC
CATGCGTTTTGCGCTTTCTAGCAACAAGAAACGCGAGGGCGCCGGTGAAG
ACCGTAAACCAAGCAAGTTCCAAATCAACTTCAAGGATGAGCGAAACGCT
GTGTTCACTATTGATGGTAAGGACTATCCAGCCTCTCTAATGGATTTGCC
TTGTATTGTTGAAACGCACAAGACGGCCGATAAACGTACATTTTACAAAA
GTGGAGATCTTCATCAAGTTCTGGTAGTTCGCATGCCGGACGAGACTCCT
CCCAAGGAAACGTACCTTCCGGATGGTGTTACACCAGCCACCAGAGGTGC
TGCAGCAAGGTTAAAGCCCCCGAAACGCTTCTTTACACGCGATGAAGTCG
AACTCATAGAGCGACGTATCAAATACGTCATCGATCATAAGACCAGTTTC
ACACAGAAGAAAACCCAAGAGAATCCTACAGAGGAGGAGGAAGTCGTTAT
TGAAGAAGAGACCGTCAACGCGCAACCCGGAAAGAATGCTGCCGATCCCA
CCAAGTCTGCTGCTAATGGCGATGCGACTGGCACAGCACCAAGAGCTGGA
AAGCCTCCATTACCGTCCGAGAGCCTGCCCGCACCCATGCCTACGGATGT
TCTTCCTTCACCAGCTGTAGATACACCCGGACCATACACACCGCAGCCGT
TTACGCCACAACCATTCACACCAACCCCGTTCACTCCTATTGATACACCA
GGTCCTGACGGGGAGGAAGATGAAgacgacgatgacgacgatgacgacga
cgacgatgatgCGATCAATGCTGATATGGCCGACATGGTCGATCAAATCA
TGGAGGACAAGGAAGATATCGCTAAAAGAAGAATAGAACGCCTGAAGCTC
GATCAAAGCATCAAGGAACAAAAAGCGAAGATTGCAGACTTGGAGGAAAA
GGCCGAGAAAGCGCCAAATCCAGTGTTGAAGAAGCGCTTCCTTTCGAAAC
GACCAGAGTTACAAACAGAGCTTACAGAGCTGGAAAAGCGGCGGCAGGAG
CTAGGAGAAGAGTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:315466..316530+

>Ggra6731.t1 ID=Ggra6731.t1|Name=Ggra6731.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1065bp|location=Sequence derived from alignment at tig00000056_pilon:315466..316530+ (Gracilaria gracilis GNS1m male)
ATGAATGAACAACAGTACATTCTACGTCTTCCACAGCCGCTTGTTGAACC
CATGCGTTTTGCGCTTTCTAGCAACAAGAAACGCGAGGGCGCCGGTGAAG
ACCGTAAACCAAGCAAGTTCCAAATCAACTTCAAGGATGAGCGAAACGCT
GTGTTCACTATTGATGGTAAGGACTATCCAGCCTCTCTAATGGATTTGCC
TTGTATTGTTGAAACGCACAAGACGGCCGATAAACGTACATTTTACAAAA
GTGGAGATCTTCATCAAGTTCTGGTAGTTCGCATGCCGGACGAGACTCCT
CCCAAGGAAACGTACCTTCCGGATGGTGTTACACCAGCCACCAGAGGTGC
TGCAGCAAGGTTAAAGCCCCCGAAACGCTTCTTTACACGCGATGAAGTCG
AACTCATAGAGCGACGTATCAAATACGTCATCGATCATAAGACCAGTTTC
ACACAGAAGAAAACCCAAGAGAATCCTACAGAGGAGGAGGAAGTCGTTAT
TGAAGAAGAGACCGTCAACGCGCAACCCGGAAAGAATGCTGCCGATCCCA
CCAAGTCTGCTGCTAATGGCGATGCGACTGGCACAGCACCAAGAGCTGGA
AAGCCTCCATTACCGTCCGAGAGCCTGCCCGCACCCATGCCTACGGATGT
TCTTCCTTCACCAGCTGTAGATACACCCGGACCATACACACCGCAGCCGT
TTACGCCACAACCATTCACACCAACCCCGTTCACTCCTATTGATACACCA
GGTCCTGACGGGGAGGAAGATGAAgacgacgatgacgacgatgacgacga
cgacgatgatgCGATCAATGCTGATATGGCCGACATGGTCGATCAAATCA
TGGAGGACAAGGAAGATATCGCTAAAAGAAGAATAGAACGCCTGAAGCTC
GATCAAAGCATCAAGGAACAAAAAGCGAAGATTGCAGACTTGGAGGAAAA
GGCCGAGAAAGCGCCAAATCCAGTGTTGAAGAAGCGCTTCCTTTCGAAAC
GACCAGAGTTACAAACAGAGCTTACAGAGCTGGAAAAGCGGCGGCAGGAG
CTAGGAGAAGAGTGA
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