Ggra6730.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6730.t1
Unique NameGgra6730.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:310317..311765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008880483.1
Preferred nameMBOAT1
PFAMsMBOAT
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K13146,ko:K13517,ko:K13519
KEGG ReactionR01318,R02241,R03437,R04480,R09034,R09035,R09036,R09381
KEGG Pathwayko00561,ko00564,ko00565,ko01100,ko01110,map00561,map00564,map00565,map01100,map01110
KEGG ModuleM00089
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0003841,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006575,GO:0006629,GO:0006644,GO:0006646,GO:0006650,GO:0006658,GO:0006793,GO:0006796,GO:0006807,GO:0006928,GO:0007009,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007349,GO:0008150,GO:0008152,GO:0008354,GO:0008374,GO:0008610,GO:0008654,GO:0009058,GO:0009653,GO:0009987,GO:0010256,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016411,GO:0016477,GO:0016740,GO:0016746,GO:0016747,GO:0019637,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030258,GO:0031224,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0036150,GO:0036151,GO:0036152,GO:0040011,GO:0042171,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045017,GO:0046337,GO:0046470,GO:0046474,GO:0046486,GO:0047144,GO:0047184,GO:0048232,GO:0048468,GO:0048515,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0061024,GO:0071617,GO:0071704,GO:0071840,GO:0090407,GO:0097164,GO:0098827,GO:1901564,GO:1901576
Evalue4.7e-75
EggNOG OGsCOG5202@1|root,KOG2704@2759|Eukaryota
EC2.3.1.23,2.3.1.51
Descriptionprotein octanoylation
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6730Ggra6730Gracilaria gracilis GNS1m malegenetig00000056_pilon 310317..311765 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6730.t1.start1Ggra6730.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 310317..310319 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6730.t1.CDS1Ggra6730.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 310317..311765 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6730.t1.exon1Ggra6730.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 310317..311765 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6730.t1.stop1Ggra6730.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 311763..311765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6730.t1Ggra6730.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 310317..311765 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6730.t1 ID=Ggra6730.t1|Name=Ggra6730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp
MTSVAALFASVRDAAFACDQALTPAPLLKGVDVLADLAAASAAEIRLFLC
LLLAYPVALSWRALPPGPSGLFRHVFSVVVGGWMLQFANGYQIILNLSSC
LLCYFLMLALGPRSARTVSVVAMCILAAGHLYRQITDYLGWTLDWTLVAM
VTTQKIMGLAYNVQDGVDPNATPEQKSRSVSRIPSLLEFLSFILFPANVI
IGPAFEYSDYVAFATGEKVAPPPYLPGLWRLFQGLFYFVSHTAIALKFPC
AAMLTDKNFFKTGTFLSRYAAIEVGLLAVRFKYYFGWKIAEGSACMSGLG
FNGFDKTRGVEKWDRVENVNVWQYETSGSLRTSSQNWNKTTNLWLRRYVY
DRAPPSINLYFTYLVSAFWHGFYPGYYMFFLSVAAATMVHRQVRRTVRPL
FLKEDRKTPGPLMSFYSFISLVATHATLNYFIISFVLLASNLSFEAFRGL
GFYGHWILLFSLILFNSGLIRPPAKKPAAKTQ*
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spliced messenger RNA

>Ggra6730.t1 ID=Ggra6730.t1|Name=Ggra6730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000056_pilon:310317..311765+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTCTGTGGCTGCTTTGTTTGCTTCCGTGCGCGATGCCGCCTTCGC
TTGTGATCAGGCGCTTACGCCCGCGCCCTTGCTCAAGGGCGTCGATGTGC
TTGCTGACCTCGCCGCCGCCAGCGCCGCCGAGATTCGGCTCTTCTTGTGC
CTCTTGTTGGCGTACCCGGTAGCGCTGTCGTGGCGGGCGCTGCCGCCAGG
CCCTTCTGGCCTGTTCCGTCATGTCTTCTCCGTCGTCGTTGGCGGTTGGA
TGCTGCAGTTTGCCAATGGCTATCAGATCATTCTCAATCTGTCGTCGTGC
CTCCTCTGCTACTTTCTTATGCTCGCGCTCGGCCCCCGCAGCGCCAGAAC
AGTCTCCGTCGTCGCCATGTGCATTCTGGCTGCCGGCCACCTGTATAGAC
AGATAACCGACTATCTGGGCTGGACGCTGGACTGGACGCTGGTTGCTATG
GTTACCACCCAGAAGATCATGGGCCTGGCCTACAATGTGCAGGACGGCGT
CGACCCCAATGCCACGCCTGAGCAAAAGTCGCGATCCGTCAGCAGAATCC
CATCGCTGCTTGAGTTTTTGAGCTTCATTCTCTTCCCGGCCAACGTTATT
ATCGGTCCGGCCTTCGAATACTCGGACTATGTTGCGTTCGCTACGGGCGA
GAAGGTTGCGCCTCCGCCCTACCTTCCAGGCCTCTGGAGACTGTTCCAGG
GTCTGTTCTATTTTGTCTCTCACACTGCAATCGCGCTCAAGTTCCCTTGC
GCTGCTATGCTCACTGACAAGAACTTCTTCAAGACGGGCACCTTCTTATC
TCGATATGCCGCCATTGAAGTTGGATTGCTTGCCGTGCGATTCAAGTACT
ACTTTGGGTGGAAGATTGCCGAGGGTTCCGCATGCATGTCGGGCTTGGGT
TTCAACGGTTTTGATAAGACTAGGGGTGTTGAGAAGTGGGATCGCGTGGA
GAACGTCAACGTGTGGCAATACGAAACATCTGGTTCGTTGCGAACGTCGT
CGCAGAACTGGAACAAGACCACCAATCTTTGGTTGCGCCGCTACGTATAT
GACCGTGCCCCACCGTCGATCAATCTTTACTTCACGTACCTCGTGTCTGC
TTTCTGGCATGGCTTCTATCCGGGCTACTACATGTTCTTCCTGTCGGTGG
CTGCCGCAACAATGGTCCACCGACAAGTGCGACGCACTGTTCGTCCGCTC
TTCCTCAAAGAAGACAGGAAGACACCTGGACCGCTCATGTCGTTTTACTC
GTTCATCTCATTAGTGGCGACGCACGCTACTCTTAACTACTTCATCATCT
CGTTTGTGTTGCTCGCGTCTAACCTTTCTTTCGAAGCGTTTAGAGGCCTT
GGCTTCTACGGACATTGGATTCTACTCTTTTCGCTTATTTTGTTCAACTC
CGGACTCATCCGACCACCAGCGAAGAAGCCTGCAGCGAAGACTCAATAA
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protein sequence of Ggra6730.t1

>Ggra6730.t1 ID=Ggra6730.t1|Name=Ggra6730.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=483bp
MTSVAALFASVRDAAFACDQALTPAPLLKGVDVLADLAAASAAEIRLFLC
LLLAYPVALSWRALPPGPSGLFRHVFSVVVGGWMLQFANGYQIILNLSSC
LLCYFLMLALGPRSARTVSVVAMCILAAGHLYRQITDYLGWTLDWTLVAM
VTTQKIMGLAYNVQDGVDPNATPEQKSRSVSRIPSLLEFLSFILFPANVI
IGPAFEYSDYVAFATGEKVAPPPYLPGLWRLFQGLFYFVSHTAIALKFPC
AAMLTDKNFFKTGTFLSRYAAIEVGLLAVRFKYYFGWKIAEGSACMSGLG
FNGFDKTRGVEKWDRVENVNVWQYETSGSLRTSSQNWNKTTNLWLRRYVY
DRAPPSINLYFTYLVSAFWHGFYPGYYMFFLSVAAATMVHRQVRRTVRPL
FLKEDRKTPGPLMSFYSFISLVATHATLNYFIISFVLLASNLSFEAFRGL
GFYGHWILLFSLILFNSGLIRPPAKKPAAKTQ*
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mRNA from alignment at tig00000056_pilon:310317..311765+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6730.t1 ID=Ggra6730.t1|Name=Ggra6730.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000056_pilon:310317..311765+ (Gracilaria gracilis GNS1m male)
ATGACGTCTGTGGCTGCTTTGTTTGCTTCCGTGCGCGATGCCGCCTTCGC
TTGTGATCAGGCGCTTACGCCCGCGCCCTTGCTCAAGGGCGTCGATGTGC
TTGCTGACCTCGCCGCCGCCAGCGCCGCCGAGATTCGGCTCTTCTTGTGC
CTCTTGTTGGCGTACCCGGTAGCGCTGTCGTGGCGGGCGCTGCCGCCAGG
CCCTTCTGGCCTGTTCCGTCATGTCTTCTCCGTCGTCGTTGGCGGTTGGA
TGCTGCAGTTTGCCAATGGCTATCAGATCATTCTCAATCTGTCGTCGTGC
CTCCTCTGCTACTTTCTTATGCTCGCGCTCGGCCCCCGCAGCGCCAGAAC
AGTCTCCGTCGTCGCCATGTGCATTCTGGCTGCCGGCCACCTGTATAGAC
AGATAACCGACTATCTGGGCTGGACGCTGGACTGGACGCTGGTTGCTATG
GTTACCACCCAGAAGATCATGGGCCTGGCCTACAATGTGCAGGACGGCGT
CGACCCCAATGCCACGCCTGAGCAAAAGTCGCGATCCGTCAGCAGAATCC
CATCGCTGCTTGAGTTTTTGAGCTTCATTCTCTTCCCGGCCAACGTTATT
ATCGGTCCGGCCTTCGAATACTCGGACTATGTTGCGTTCGCTACGGGCGA
GAAGGTTGCGCCTCCGCCCTACCTTCCAGGCCTCTGGAGACTGTTCCAGG
GTCTGTTCTATTTTGTCTCTCACACTGCAATCGCGCTCAAGTTCCCTTGC
GCTGCTATGCTCACTGACAAGAACTTCTTCAAGACGGGCACCTTCTTATC
TCGATATGCCGCCATTGAAGTTGGATTGCTTGCCGTGCGATTCAAGTACT
ACTTTGGGTGGAAGATTGCCGAGGGTTCCGCATGCATGTCGGGCTTGGGT
TTCAACGGTTTTGATAAGACTAGGGGTGTTGAGAAGTGGGATCGCGTGGA
GAACGTCAACGTGTGGCAATACGAAACATCTGGTTCGTTGCGAACGTCGT
CGCAGAACTGGAACAAGACCACCAATCTTTGGTTGCGCCGCTACGTATAT
GACCGTGCCCCACCGTCGATCAATCTTTACTTCACGTACCTCGTGTCTGC
TTTCTGGCATGGCTTCTATCCGGGCTACTACATGTTCTTCCTGTCGGTGG
CTGCCGCAACAATGGTCCACCGACAAGTGCGACGCACTGTTCGTCCGCTC
TTCCTCAAAGAAGACAGGAAGACACCTGGACCGCTCATGTCGTTTTACTC
GTTCATCTCATTAGTGGCGACGCACGCTACTCTTAACTACTTCATCATCT
CGTTTGTGTTGCTCGCGTCTAACCTTTCTTTCGAAGCGTTTAGAGGCCTT
GGCTTCTACGGACATTGGATTCTACTCTTTTCGCTTATTTTGTTCAACTC
CGGACTCATCCGACCACCAGCGAAGAAGCCTGCAGCGAAGACTCAATAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:310317..311765+

>Ggra6730.t1 ID=Ggra6730.t1|Name=Ggra6730.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00000056_pilon:310317..311765+ (Gracilaria gracilis GNS1m male)
ATGACGTCTGTGGCTGCTTTGTTTGCTTCCGTGCGCGATGCCGCCTTCGC
TTGTGATCAGGCGCTTACGCCCGCGCCCTTGCTCAAGGGCGTCGATGTGC
TTGCTGACCTCGCCGCCGCCAGCGCCGCCGAGATTCGGCTCTTCTTGTGC
CTCTTGTTGGCGTACCCGGTAGCGCTGTCGTGGCGGGCGCTGCCGCCAGG
CCCTTCTGGCCTGTTCCGTCATGTCTTCTCCGTCGTCGTTGGCGGTTGGA
TGCTGCAGTTTGCCAATGGCTATCAGATCATTCTCAATCTGTCGTCGTGC
CTCCTCTGCTACTTTCTTATGCTCGCGCTCGGCCCCCGCAGCGCCAGAAC
AGTCTCCGTCGTCGCCATGTGCATTCTGGCTGCCGGCCACCTGTATAGAC
AGATAACCGACTATCTGGGCTGGACGCTGGACTGGACGCTGGTTGCTATG
GTTACCACCCAGAAGATCATGGGCCTGGCCTACAATGTGCAGGACGGCGT
CGACCCCAATGCCACGCCTGAGCAAAAGTCGCGATCCGTCAGCAGAATCC
CATCGCTGCTTGAGTTTTTGAGCTTCATTCTCTTCCCGGCCAACGTTATT
ATCGGTCCGGCCTTCGAATACTCGGACTATGTTGCGTTCGCTACGGGCGA
GAAGGTTGCGCCTCCGCCCTACCTTCCAGGCCTCTGGAGACTGTTCCAGG
GTCTGTTCTATTTTGTCTCTCACACTGCAATCGCGCTCAAGTTCCCTTGC
GCTGCTATGCTCACTGACAAGAACTTCTTCAAGACGGGCACCTTCTTATC
TCGATATGCCGCCATTGAAGTTGGATTGCTTGCCGTGCGATTCAAGTACT
ACTTTGGGTGGAAGATTGCCGAGGGTTCCGCATGCATGTCGGGCTTGGGT
TTCAACGGTTTTGATAAGACTAGGGGTGTTGAGAAGTGGGATCGCGTGGA
GAACGTCAACGTGTGGCAATACGAAACATCTGGTTCGTTGCGAACGTCGT
CGCAGAACTGGAACAAGACCACCAATCTTTGGTTGCGCCGCTACGTATAT
GACCGTGCCCCACCGTCGATCAATCTTTACTTCACGTACCTCGTGTCTGC
TTTCTGGCATGGCTTCTATCCGGGCTACTACATGTTCTTCCTGTCGGTGG
CTGCCGCAACAATGGTCCACCGACAAGTGCGACGCACTGTTCGTCCGCTC
TTCCTCAAAGAAGACAGGAAGACACCTGGACCGCTCATGTCGTTTTACTC
GTTCATCTCATTAGTGGCGACGCACGCTACTCTTAACTACTTCATCATCT
CGTTTGTGTTGCTCGCGTCTAACCTTTCTTTCGAAGCGTTTAGAGGCCTT
GGCTTCTACGGACATTGGATTCTACTCTTTTCGCTTATTTTGTTCAACTC
CGGACTCATCCGACCACCAGCGAAGAAGCCTGCAGCGAAGACTCAATAA
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