Ggra6726.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6726.t1
Unique Name	Ggra6726.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	505

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:300478..301992 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707948.1
PFAMs	DUF3395,DnaJ
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K02288,ko:K09531
KEGG Pathway	ko00196,ko01100,map00196,map01100
Evalue	1.41e-95
EggNOG OGs	COG0484@1\|root,KOG0718@2759\|Eukaryota
EC	4.4.1.32
Description	response to very low light intensity stimulus
COG category	O
BRITE	ko00000,ko00001,ko00194,ko01000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6726	Ggra6726	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 300478..301992 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6726.t1.start1	Ggra6726.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 300478..300480 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6726.t1.CDS1	Ggra6726.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 300478..301992 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6726.t1.exon1	Ggra6726.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 300478..301992 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6726.t1.stop1	Ggra6726.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 301990..301992 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6726.t1	Ggra6726.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 300478..301992 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:300478..301992+
coding sequence from alignment at tig00000056_pilon:300478..301992+

mRNA sequence

>Ggra6726.t1 ID=Ggra6726.t1|Name=Ggra6726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=505bp
MSAFTPPIPLSYLSYGRFKCAPNQSTMRATLSAHSQPSLYSVLGLDHTNP
SAVTTAHIRKAYLNLAKQTHPDTLQNATSSSFDQVSHAYTVLSDPELRSV
YDETGHEGLAAVRSIQQRAQQIRDKFASMSGEQLDFLSDSGELVGGLLSP
SSDGHAFDPSTVSHEDACPRSIEEAIWNIQFHPDRSVRYYGLWWVYKFKV
TEAEVALVNVLQTSDDQTSLGGYGIRRRAALALGAVASAPTESNQAAVVA
LSDALRSADYFLRYRAAEALSNIAQRCALSGQQYSFPQSVTYQLKSLLAN
GQKSFAAEEEAKSGYSQQESLFNLEKLDPPLREKLEAIFRERRENEKRSR
RTTMTPQLGVDAVGSSSDQPYEWLLKAVSAICANHTSHLDDELLGIIESY
TSNSIPLVRYAAHKGLFAITGAEKHAQQIVRALEYGVEHHYSQRVLIRDL
GDLGYSKGAEAVALCPMVENSFKILALKNMLAKHNHDPSSQDVRDVLSHM
DSLL*

spliced messenger RNA

>Ggra6726.t1 ID=Ggra6726.t1|Name=Ggra6726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000056_pilon:300478..301992+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCTTCACTCCACCCATTCCACTATCGTATCTAAGCTATGGTCG
CTTCAAGTGTGCTCCAAATCAGAGCACAATGCGCGCCACTCTGTCCGCAC
ACTCGCAGCCCTCTCTTTACTCAGTCCTTGGCCTAGACCACACCAACCCA
TCTGCAGTCACAACTGCTCACATTCGAAAAGCTTATCTCAACCTTGCCAA
ACAAACTCATCCTGACACCCTTCAGAACGCCACTTCGTCATCATTTGACC
AAGTATCCCACGCATACACCGTGCTCAGTGACCCCGAGCTGCGTTCCGTG
TACGACGAAACTGGTCACGAAGGGCTGGCAGCCGTCAGGAGCATTCAACA
GCGCGCACAGCAGATTCGTGACAAATTCGCTTCCATGTCGGGTGAGCAAC
TCGACTTCCTCAGCGATTCCGGCGAGCTGGTCGGCGGACTCTTGTCCCCT
TCTTCGGACGGCCACGCATTTGATCCATCCACCGTATCACACGAAGATGC
TTGTCCGCGTTCGATTGAGGAGGCCATTTGGAATATTCAGTTTCACCCCG
ATCGCAGTGTGCGATACTATGGTTTGTGGTGGGTGTACAAGTTCAAGGTA
ACGGAGGCAGAGGTGGCGCTTGTTAACGTTTTGCAAACCTCAGACGACCA
AACAAGCCTGGGCGGATATGGAATACGCCGTAGGGCTGCTCTGGCACTTG
GCGCTGTTGCCTCGGCACCTACTGAATCCAATCAAGCTGCAGTAGTTGCG
CTTTCGGACGCGCTCCGCAGTGCTGATTATTTCTTGAGATATCGAGCTGC
CGAAGCTTTGTCGAATATAGCACAGCGATGTGCGCTTTCAGGACAACAAT
ATTCCTTTCCACAGAGCGTGACCTATCAGCTAAAATCGCTTCTAGCCAAC
GGTCAGAAAAGTTTTGCCGCCGAGGAAGAGGCCAAGTCTGGGTACAGTCA
ACAGGAAAGTCTATTCAACCTTGAAAAACTCGACCCCCCATTGCGGGAAA
AGCTTGAGGCCATTTTCAGAGAACGTCGAGAGAATGAGAAGCGCAGTAGA
CGAACGACAATGACCCCACAACTGGGTGTGGATGCAGTGGGTTCCAGTTC
AGATCAACCTTACGAATGGTTGCTGAAAGCGGTATCAGCAATTTGCGCGA
ATCACACATCTCATCTTGACGATGAGTTGCTTGGCATTATTGAATCCTAC
ACATCCAACTCAATACCTCTGGTGCGTTACGCAGCTCACAAGGGCCTCTT
CGCAATAACTGGAGCAGAGAAGCACGCGCAACAAATTGTGCGAGCACTAG
AGTACGGAGTGGAACATCATTATTCTCAGCGAGTTCTTATCCGAGATCTT
GGTGACCTGGGATACTCTAAGGGAGCGGAAGCTGTAGCTCTTTGTCCAAT
GGTTGAGAACAGTTTCAAAATCTTAGCACTGAAGAATATGCTCGCGAAGC
ATAACCACGACCCATCCTCTCAAGATGTGAGAGATGTACTCTCGCACATG
GACTCCCTTTTGTAG

protein sequence of Ggra6726.t1

>Ggra6726.t1 ID=Ggra6726.t1|Name=Ggra6726.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=505bp
MSAFTPPIPLSYLSYGRFKCAPNQSTMRATLSAHSQPSLYSVLGLDHTNP
SAVTTAHIRKAYLNLAKQTHPDTLQNATSSSFDQVSHAYTVLSDPELRSV
YDETGHEGLAAVRSIQQRAQQIRDKFASMSGEQLDFLSDSGELVGGLLSP
SSDGHAFDPSTVSHEDACPRSIEEAIWNIQFHPDRSVRYYGLWWVYKFKV
TEAEVALVNVLQTSDDQTSLGGYGIRRRAALALGAVASAPTESNQAAVVA
LSDALRSADYFLRYRAAEALSNIAQRCALSGQQYSFPQSVTYQLKSLLAN
GQKSFAAEEEAKSGYSQQESLFNLEKLDPPLREKLEAIFRERRENEKRSR
RTTMTPQLGVDAVGSSSDQPYEWLLKAVSAICANHTSHLDDELLGIIESY
TSNSIPLVRYAAHKGLFAITGAEKHAQQIVRALEYGVEHHYSQRVLIRDL
GDLGYSKGAEAVALCPMVENSFKILALKNMLAKHNHDPSSQDVRDVLSHM
DSLL*

mRNA from alignment at tig00000056_pilon:300478..301992+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6726.t1 ID=Ggra6726.t1|Name=Ggra6726.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1515bp|location=Sequence derived from alignment at tig00000056_pilon:300478..301992+ (Gracilaria gracilis GNS1m male)
ATGTCTGCCTTCACTCCACCCATTCCACTATCGTATCTAAGCTATGGTCG
CTTCAAGTGTGCTCCAAATCAGAGCACAATGCGCGCCACTCTGTCCGCAC
ACTCGCAGCCCTCTCTTTACTCAGTCCTTGGCCTAGACCACACCAACCCA
TCTGCAGTCACAACTGCTCACATTCGAAAAGCTTATCTCAACCTTGCCAA
ACAAACTCATCCTGACACCCTTCAGAACGCCACTTCGTCATCATTTGACC
AAGTATCCCACGCATACACCGTGCTCAGTGACCCCGAGCTGCGTTCCGTG
TACGACGAAACTGGTCACGAAGGGCTGGCAGCCGTCAGGAGCATTCAACA
GCGCGCACAGCAGATTCGTGACAAATTCGCTTCCATGTCGGGTGAGCAAC
TCGACTTCCTCAGCGATTCCGGCGAGCTGGTCGGCGGACTCTTGTCCCCT
TCTTCGGACGGCCACGCATTTGATCCATCCACCGTATCACACGAAGATGC
TTGTCCGCGTTCGATTGAGGAGGCCATTTGGAATATTCAGTTTCACCCCG
ATCGCAGTGTGCGATACTATGGTTTGTGGTGGGTGTACAAGTTCAAGGTA
ACGGAGGCAGAGGTGGCGCTTGTTAACGTTTTGCAAACCTCAGACGACCA
AACAAGCCTGGGCGGATATGGAATACGCCGTAGGGCTGCTCTGGCACTTG
GCGCTGTTGCCTCGGCACCTACTGAATCCAATCAAGCTGCAGTAGTTGCG
CTTTCGGACGCGCTCCGCAGTGCTGATTATTTCTTGAGATATCGAGCTGC
CGAAGCTTTGTCGAATATAGCACAGCGATGTGCGCTTTCAGGACAACAAT
ATTCCTTTCCACAGAGCGTGACCTATCAGCTAAAATCGCTTCTAGCCAAC
GGTCAGAAAAGTTTTGCCGCCGAGGAAGAGGCCAAGTCTGGGTACAGTCA
ACAGGAAAGTCTATTCAACCTTGAAAAACTCGACCCCCCATTGCGGGAAA
AGCTTGAGGCCATTTTCAGAGAACGTCGAGAGAATGAGAAGCGCAGTAGA
CGAACGACAATGACCCCACAACTGGGTGTGGATGCAGTGGGTTCCAGTTC
AGATCAACCTTACGAATGGTTGCTGAAAGCGGTATCAGCAATTTGCGCGA
ATCACACATCTCATCTTGACGATGAGTTGCTTGGCATTATTGAATCCTAC
ACATCCAACTCAATACCTCTGGTGCGTTACGCAGCTCACAAGGGCCTCTT
CGCAATAACTGGAGCAGAGAAGCACGCGCAACAAATTGTGCGAGCACTAG
AGTACGGAGTGGAACATCATTATTCTCAGCGAGTTCTTATCCGAGATCTT
GGTGACCTGGGATACTCTAAGGGAGCGGAAGCTGTAGCTCTTTGTCCAAT
GGTTGAGAACAGTTTCAAAATCTTAGCACTGAAGAATATGCTCGCGAAGC
ATAACCACGACCCATCCTCTCAAGATGTGAGAGATGTACTCTCGCACATG
GACTCCCTTTTGTAG

Coding sequence (CDS) from alignment at tig00000056_pilon:300478..301992+

>Ggra6726.t1 ID=Ggra6726.t1|Name=Ggra6726.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1515bp|location=Sequence derived from alignment at tig00000056_pilon:300478..301992+ (Gracilaria gracilis GNS1m male)
ATGTCTGCCTTCACTCCACCCATTCCACTATCGTATCTAAGCTATGGTCG
CTTCAAGTGTGCTCCAAATCAGAGCACAATGCGCGCCACTCTGTCCGCAC
ACTCGCAGCCCTCTCTTTACTCAGTCCTTGGCCTAGACCACACCAACCCA
TCTGCAGTCACAACTGCTCACATTCGAAAAGCTTATCTCAACCTTGCCAA
ACAAACTCATCCTGACACCCTTCAGAACGCCACTTCGTCATCATTTGACC
AAGTATCCCACGCATACACCGTGCTCAGTGACCCCGAGCTGCGTTCCGTG
TACGACGAAACTGGTCACGAAGGGCTGGCAGCCGTCAGGAGCATTCAACA
GCGCGCACAGCAGATTCGTGACAAATTCGCTTCCATGTCGGGTGAGCAAC
TCGACTTCCTCAGCGATTCCGGCGAGCTGGTCGGCGGACTCTTGTCCCCT
TCTTCGGACGGCCACGCATTTGATCCATCCACCGTATCACACGAAGATGC
TTGTCCGCGTTCGATTGAGGAGGCCATTTGGAATATTCAGTTTCACCCCG
ATCGCAGTGTGCGATACTATGGTTTGTGGTGGGTGTACAAGTTCAAGGTA
ACGGAGGCAGAGGTGGCGCTTGTTAACGTTTTGCAAACCTCAGACGACCA
AACAAGCCTGGGCGGATATGGAATACGCCGTAGGGCTGCTCTGGCACTTG
GCGCTGTTGCCTCGGCACCTACTGAATCCAATCAAGCTGCAGTAGTTGCG
CTTTCGGACGCGCTCCGCAGTGCTGATTATTTCTTGAGATATCGAGCTGC
CGAAGCTTTGTCGAATATAGCACAGCGATGTGCGCTTTCAGGACAACAAT
ATTCCTTTCCACAGAGCGTGACCTATCAGCTAAAATCGCTTCTAGCCAAC
GGTCAGAAAAGTTTTGCCGCCGAGGAAGAGGCCAAGTCTGGGTACAGTCA
ACAGGAAAGTCTATTCAACCTTGAAAAACTCGACCCCCCATTGCGGGAAA
AGCTTGAGGCCATTTTCAGAGAACGTCGAGAGAATGAGAAGCGCAGTAGA
CGAACGACAATGACCCCACAACTGGGTGTGGATGCAGTGGGTTCCAGTTC
AGATCAACCTTACGAATGGTTGCTGAAAGCGGTATCAGCAATTTGCGCGA
ATCACACATCTCATCTTGACGATGAGTTGCTTGGCATTATTGAATCCTAC
ACATCCAACTCAATACCTCTGGTGCGTTACGCAGCTCACAAGGGCCTCTT
CGCAATAACTGGAGCAGAGAAGCACGCGCAACAAATTGTGCGAGCACTAG
AGTACGGAGTGGAACATCATTATTCTCAGCGAGTTCTTATCCGAGATCTT
GGTGACCTGGGATACTCTAAGGGAGCGGAAGCTGTAGCTCTTTGTCCAAT
GGTTGAGAACAGTTTCAAAATCTTAGCACTGAAGAATATGCTCGCGAAGC
ATAACCACGACCCATCCTCTCAAGATGTGAGAGATGTACTCTCGCACATG
GACTCCCTTTTGTAG