Ggra6724.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6724.t1
Unique Name	Ggra6724.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	605

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:295444..297258 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1136417.AZWE01000056_gene320
Preferred name	glsA
PFAMs	Glutaminase
Max annot lvl	201174\|Actinobacteria
KEGG rclass	RC00010,RC02798
KEGG ko	ko:K01425
KEGG Reaction	R00256,R01579
KEGG Pathway	ko00220,ko00250,ko00471,ko01100,ko04724,ko04727,ko04964,ko05206,ko05230,map00220,map00250,map00471,map01100,map04724,map04727,map04964,map05206,map05230
GOs	GO:0003674,GO:0003824,GO:0004359,GO:0006082,GO:0006520,GO:0006536,GO:0006537,GO:0006541,GO:0006543,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009063,GO:0009064,GO:0009065,GO:0009084,GO:0009987,GO:0016053,GO:0016054,GO:0016787,GO:0016810,GO:0016811,GO:0019752,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044282,GO:0044283,GO:0046394,GO:0046395,GO:0071704,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901605,GO:1901606,GO:1901607
Evalue	1.66e-90
EggNOG OGs	COG0666@1\|root,COG2066@1\|root,COG0666@2\|Bacteria,COG2066@2\|Bacteria,2GKAV@201174\|Actinobacteria,4DDJY@85008\|Micromonosporales
EC	3.5.1.2
Description	Glutaminase
COG category	E
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6724	Ggra6724	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 295444..297258 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6724.t1.start1	Ggra6724.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 295444..295446 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6724.t1.CDS1	Ggra6724.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 295444..297258 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6724.t1.exon1	Ggra6724.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 295444..297258 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6724.t1.stop1	Ggra6724.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 297256..297258 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6724.t1	Ggra6724.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 295444..297258 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:295444..297258+
coding sequence from alignment at tig00000056_pilon:295444..297258+

mRNA sequence

>Ggra6724.t1 ID=Ggra6724.t1|Name=Ggra6724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=605bp
MSLSSILDVLKLECTDEEVLIGLGGESSSITVDQIRKAIQQTGIVVEGSK
PDPRVQEVLKSLREFDSDHHLSAEQFISAASENLTLLHRIATKEMVIRDF
SEFKRHLDDLKAKIEPVEKGETADYIPILKHASPHKFGVAFCSVDGQLYE
SGDTRELFSVQSTCKPIMFALALQKLGRKKILDWCGIEPSGRPFNDLTLM
SDDRPFNPMINSGALMISGLLAAAFPNTVREDGPCGEDETYARKLCEEVL
LPVWRSLAAADVFDQLQIGFSPETFLSERGTADRNIAITHNMKASGKGLP
PNVSTQYVIDFYLRSCSITANASAMSVVAATLANGGKNPITCEHVFEGDA
VTKMLSVLSLCGFYDNSGEFFFDTGIPSKSGVSGVVMMVLPNIGGFAIYS
PRLDKCGNSVRGSLFAKELVGLFTFHAFDNLSALSTGCKLDPRFSCDASR
QRDISRLRWAVRAKGKQALKFDALLVNVCLRIALANGAVGAEELEVIKRS
YRAVMHLDLCAARLKRIRREISTSADRGPESLLKHVRAEAVRLSDTEKEL
ILAAAVKVATADGVVRRSEEAVLLVVAEAMHIEKSVLDFRLKCWKRECNV
AEDT*

spliced messenger RNA

>Ggra6724.t1 ID=Ggra6724.t1|Name=Ggra6724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000056_pilon:295444..297258+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTTATCAAGTATACTTGATGTTTTAAAGCTAGAGTGCACAGATGA
AGAGGTCTTGATAGGTCTAGGTGGTGAATCATCAAGTATAACTGTTGACC
AGATAAGAAAAGCCATTCAGCAAACAGGCATAGTTGTCGAAGGAAGTAAG
CCCGATCCAAGAGTGCAAGAGGTGTTGAAATCTTTGAGGGAATTCGATTC
AGATCATCATCTCTCCGCGGAGCAGTTCATAAGCGCTGCTTCCGAAAATC
TTACACTTCTTCATCGCATCGCGACGAAAGAAATGGTCATAAGAGATTTC
AGTGAGTTTAAACGACACCTCGATGATTTGAAGGCCAAGATCGAACCAGT
AGAAAAAGGTGAGACCGCAGATTACATTCCTATCTTGAAACATGCGTCAC
CTCACAAATTTGGAGTCGCCTTCTGTTCGGTGGATGGACAACTCTACGAG
TCTGGCGATACAAGAGAACTGTTTAGTGTTCAGAGCACTTGCAAACCCAT
CATGTTTGCCCTCGCGCTACAGAAACTGGGACGGAAAAAGATATTGGATT
GGTGTGGCATCGAACCAAGCGGTCGACCCTTCAATGACTTGACTCTCATG
AGTGACGATCGGCCGTTCAACCCAATGATTAACAGCGGTGCTCTTATGAT
ATCCGGACTTCTAGCAGCTGCGTTTCCAAACACTGTCAGGGAAGATGGTC
CTTGTGGGGAAGATGAGACGTATGCTCGGAAACTTTGTGAGGAAGTTTTG
CTGCCGGTATGGCGTAGTCTGGCAGCAGCTGATGTGTTCGATCAACTTCA
AATCGGATTTTCTCCGGAGACGTTTCTGTCAGAGCGGGGAACAGCGGACA
GAAATATTGCTATCACTCATAACATGAAAGCAAGTGGCAAGGGCTTGCCA
CCAAATGTAAGCACGCAGTACGTGATTGACTTTTATCTTCGTTCATGTTC
TATCACTGCAAATGCTTCGGCAATGTCAGTTGTTGCTGCCACTCTAGCAA
ACGGCGGCAAAAACCCGATCACTTGCGAACATGTGTTTGAAGGGGACGCG
GTGACGAAAATGCTTTCTGTTTTAAGTCTGTGCGGGTTCTATGACAACTC
TGGAGAATTCTTTTTCGACACTGGCATACCTTCCAAGTCAGGCGTAAGCG
GTGTTGTGATGATGGTGTTGCCCAACATCGGTGGGTTTGCAATCTACTCT
CCCCGTCTCGACAAATGTGGAAACTCAGTCCGTGGCTCGTTATTCGCAAA
AGAACTGGTGGGGTTATTCACATTCCATGCCTTTGACAATCTGTCGGCAC
TTTCAACGGGCTGCAAGCTGGACCCTCGCTTTAGTTGTGACGCATCGCGT
CAAAGAGACATTTCGCGTTTGCGTTGGGCAGTTAGGGCAAAAGGAAAACA
GGCTTTGAAGTTTGACGCGCTTCTTGTAAACGTTTGTCTCCGCATCGCGT
TAGCAAACGGAGCAGTTGGAGCTGAGGAACTAGAAGTGATCAAACGTTCT
TACAGAGCTGTGATGCACTTGGATCTGTGTGCAGCTCGTTTGAAAAGAAT
AAGACGGGAAATAAGCACATCTGCTGATAGGGGGCCGGAGAGTTTGCTGA
AACATGTTCGAGCTGAGGCTGTGCGCCTGAGCGACACGGAAAAGGAACTG
ATTCTTGCCGCTGCTGTGAAGGTGGCAACGGCTGATGGGGTAGTGCGCCG
TTCCGAAGAAGCGGTGCTTTTAGTTGTTGCCGAAGCAATGCACATCGAGA
AAAGTGTGCTGGACTTCCGTCTCAAATGTTGGAAGAGGGAATGTAACGTA
GCGGAGGACACATAG

protein sequence of Ggra6724.t1

>Ggra6724.t1 ID=Ggra6724.t1|Name=Ggra6724.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=605bp
MSLSSILDVLKLECTDEEVLIGLGGESSSITVDQIRKAIQQTGIVVEGSK
PDPRVQEVLKSLREFDSDHHLSAEQFISAASENLTLLHRIATKEMVIRDF
SEFKRHLDDLKAKIEPVEKGETADYIPILKHASPHKFGVAFCSVDGQLYE
SGDTRELFSVQSTCKPIMFALALQKLGRKKILDWCGIEPSGRPFNDLTLM
SDDRPFNPMINSGALMISGLLAAAFPNTVREDGPCGEDETYARKLCEEVL
LPVWRSLAAADVFDQLQIGFSPETFLSERGTADRNIAITHNMKASGKGLP
PNVSTQYVIDFYLRSCSITANASAMSVVAATLANGGKNPITCEHVFEGDA
VTKMLSVLSLCGFYDNSGEFFFDTGIPSKSGVSGVVMMVLPNIGGFAIYS
PRLDKCGNSVRGSLFAKELVGLFTFHAFDNLSALSTGCKLDPRFSCDASR
QRDISRLRWAVRAKGKQALKFDALLVNVCLRIALANGAVGAEELEVIKRS
YRAVMHLDLCAARLKRIRREISTSADRGPESLLKHVRAEAVRLSDTEKEL
ILAAAVKVATADGVVRRSEEAVLLVVAEAMHIEKSVLDFRLKCWKRECNV
AEDT*

mRNA from alignment at tig00000056_pilon:295444..297258+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6724.t1 ID=Ggra6724.t1|Name=Ggra6724.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1815bp|location=Sequence derived from alignment at tig00000056_pilon:295444..297258+ (Gracilaria gracilis GNS1m male)
ATGAGTTTATCAAGTATACTTGATGTTTTAAAGCTAGAGTGCACAGATGA
AGAGGTCTTGATAGGTCTAGGTGGTGAATCATCAAGTATAACTGTTGACC
AGATAAGAAAAGCCATTCAGCAAACAGGCATAGTTGTCGAAGGAAGTAAG
CCCGATCCAAGAGTGCAAGAGGTGTTGAAATCTTTGAGGGAATTCGATTC
AGATCATCATCTCTCCGCGGAGCAGTTCATAAGCGCTGCTTCCGAAAATC
TTACACTTCTTCATCGCATCGCGACGAAAGAAATGGTCATAAGAGATTTC
AGTGAGTTTAAACGACACCTCGATGATTTGAAGGCCAAGATCGAACCAGT
AGAAAAAGGTGAGACCGCAGATTACATTCCTATCTTGAAACATGCGTCAC
CTCACAAATTTGGAGTCGCCTTCTGTTCGGTGGATGGACAACTCTACGAG
TCTGGCGATACAAGAGAACTGTTTAGTGTTCAGAGCACTTGCAAACCCAT
CATGTTTGCCCTCGCGCTACAGAAACTGGGACGGAAAAAGATATTGGATT
GGTGTGGCATCGAACCAAGCGGTCGACCCTTCAATGACTTGACTCTCATG
AGTGACGATCGGCCGTTCAACCCAATGATTAACAGCGGTGCTCTTATGAT
ATCCGGACTTCTAGCAGCTGCGTTTCCAAACACTGTCAGGGAAGATGGTC
CTTGTGGGGAAGATGAGACGTATGCTCGGAAACTTTGTGAGGAAGTTTTG
CTGCCGGTATGGCGTAGTCTGGCAGCAGCTGATGTGTTCGATCAACTTCA
AATCGGATTTTCTCCGGAGACGTTTCTGTCAGAGCGGGGAACAGCGGACA
GAAATATTGCTATCACTCATAACATGAAAGCAAGTGGCAAGGGCTTGCCA
CCAAATGTAAGCACGCAGTACGTGATTGACTTTTATCTTCGTTCATGTTC
TATCACTGCAAATGCTTCGGCAATGTCAGTTGTTGCTGCCACTCTAGCAA
ACGGCGGCAAAAACCCGATCACTTGCGAACATGTGTTTGAAGGGGACGCG
GTGACGAAAATGCTTTCTGTTTTAAGTCTGTGCGGGTTCTATGACAACTC
TGGAGAATTCTTTTTCGACACTGGCATACCTTCCAAGTCAGGCGTAAGCG
GTGTTGTGATGATGGTGTTGCCCAACATCGGTGGGTTTGCAATCTACTCT
CCCCGTCTCGACAAATGTGGAAACTCAGTCCGTGGCTCGTTATTCGCAAA
AGAACTGGTGGGGTTATTCACATTCCATGCCTTTGACAATCTGTCGGCAC
TTTCAACGGGCTGCAAGCTGGACCCTCGCTTTAGTTGTGACGCATCGCGT
CAAAGAGACATTTCGCGTTTGCGTTGGGCAGTTAGGGCAAAAGGAAAACA
GGCTTTGAAGTTTGACGCGCTTCTTGTAAACGTTTGTCTCCGCATCGCGT
TAGCAAACGGAGCAGTTGGAGCTGAGGAACTAGAAGTGATCAAACGTTCT
TACAGAGCTGTGATGCACTTGGATCTGTGTGCAGCTCGTTTGAAAAGAAT
AAGACGGGAAATAAGCACATCTGCTGATAGGGGGCCGGAGAGTTTGCTGA
AACATGTTCGAGCTGAGGCTGTGCGCCTGAGCGACACGGAAAAGGAACTG
ATTCTTGCCGCTGCTGTGAAGGTGGCAACGGCTGATGGGGTAGTGCGCCG
TTCCGAAGAAGCGGTGCTTTTAGTTGTTGCCGAAGCAATGCACATCGAGA
AAAGTGTGCTGGACTTCCGTCTCAAATGTTGGAAGAGGGAATGTAACGTA
GCGGAGGACACATAG

Coding sequence (CDS) from alignment at tig00000056_pilon:295444..297258+

>Ggra6724.t1 ID=Ggra6724.t1|Name=Ggra6724.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1815bp|location=Sequence derived from alignment at tig00000056_pilon:295444..297258+ (Gracilaria gracilis GNS1m male)
ATGAGTTTATCAAGTATACTTGATGTTTTAAAGCTAGAGTGCACAGATGA
AGAGGTCTTGATAGGTCTAGGTGGTGAATCATCAAGTATAACTGTTGACC
AGATAAGAAAAGCCATTCAGCAAACAGGCATAGTTGTCGAAGGAAGTAAG
CCCGATCCAAGAGTGCAAGAGGTGTTGAAATCTTTGAGGGAATTCGATTC
AGATCATCATCTCTCCGCGGAGCAGTTCATAAGCGCTGCTTCCGAAAATC
TTACACTTCTTCATCGCATCGCGACGAAAGAAATGGTCATAAGAGATTTC
AGTGAGTTTAAACGACACCTCGATGATTTGAAGGCCAAGATCGAACCAGT
AGAAAAAGGTGAGACCGCAGATTACATTCCTATCTTGAAACATGCGTCAC
CTCACAAATTTGGAGTCGCCTTCTGTTCGGTGGATGGACAACTCTACGAG
TCTGGCGATACAAGAGAACTGTTTAGTGTTCAGAGCACTTGCAAACCCAT
CATGTTTGCCCTCGCGCTACAGAAACTGGGACGGAAAAAGATATTGGATT
GGTGTGGCATCGAACCAAGCGGTCGACCCTTCAATGACTTGACTCTCATG
AGTGACGATCGGCCGTTCAACCCAATGATTAACAGCGGTGCTCTTATGAT
ATCCGGACTTCTAGCAGCTGCGTTTCCAAACACTGTCAGGGAAGATGGTC
CTTGTGGGGAAGATGAGACGTATGCTCGGAAACTTTGTGAGGAAGTTTTG
CTGCCGGTATGGCGTAGTCTGGCAGCAGCTGATGTGTTCGATCAACTTCA
AATCGGATTTTCTCCGGAGACGTTTCTGTCAGAGCGGGGAACAGCGGACA
GAAATATTGCTATCACTCATAACATGAAAGCAAGTGGCAAGGGCTTGCCA
CCAAATGTAAGCACGCAGTACGTGATTGACTTTTATCTTCGTTCATGTTC
TATCACTGCAAATGCTTCGGCAATGTCAGTTGTTGCTGCCACTCTAGCAA
ACGGCGGCAAAAACCCGATCACTTGCGAACATGTGTTTGAAGGGGACGCG
GTGACGAAAATGCTTTCTGTTTTAAGTCTGTGCGGGTTCTATGACAACTC
TGGAGAATTCTTTTTCGACACTGGCATACCTTCCAAGTCAGGCGTAAGCG
GTGTTGTGATGATGGTGTTGCCCAACATCGGTGGGTTTGCAATCTACTCT
CCCCGTCTCGACAAATGTGGAAACTCAGTCCGTGGCTCGTTATTCGCAAA
AGAACTGGTGGGGTTATTCACATTCCATGCCTTTGACAATCTGTCGGCAC
TTTCAACGGGCTGCAAGCTGGACCCTCGCTTTAGTTGTGACGCATCGCGT
CAAAGAGACATTTCGCGTTTGCGTTGGGCAGTTAGGGCAAAAGGAAAACA
GGCTTTGAAGTTTGACGCGCTTCTTGTAAACGTTTGTCTCCGCATCGCGT
TAGCAAACGGAGCAGTTGGAGCTGAGGAACTAGAAGTGATCAAACGTTCT
TACAGAGCTGTGATGCACTTGGATCTGTGTGCAGCTCGTTTGAAAAGAAT
AAGACGGGAAATAAGCACATCTGCTGATAGGGGGCCGGAGAGTTTGCTGA
AACATGTTCGAGCTGAGGCTGTGCGCCTGAGCGACACGGAAAAGGAACTG
ATTCTTGCCGCTGCTGTGAAGGTGGCAACGGCTGATGGGGTAGTGCGCCG
TTCCGAAGAAGCGGTGCTTTTAGTTGTTGCCGAAGCAATGCACATCGAGA
AAAGTGTGCTGGACTTCCGTCTCAAATGTTGGAAGAGGGAATGTAACGTA
GCGGAGGACACATAG