Ggra6720.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6720.t1
Unique NameGgra6720.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:285797..287368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705479.1
PFAMsFer2_4,Molybdopterin,NADH-G_4Fe-4S_3,NADH_dhqG_C
Max annot lvl2759|Eukaryota
KEGG rclassRC00061
KEGG koko:K03934
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143
Evalue2.88e-196
EggNOG OGsCOG1034@1|root,KOG2282@2759|Eukaryota
EC1.6.5.3,1.6.99.3
DescriptionNADH dehydrogenase (quinone) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6720Ggra6720Gracilaria gracilis GNS1m malegenetig00000056_pilon 285797..287368 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6720.t1.stop1Ggra6720.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 285797..285799 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6720.t1.CDS1Ggra6720.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 285797..287368 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6720.t1.exon1Ggra6720.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 285797..287368 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6720.t1.start1Ggra6720.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 287366..287368 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6720.t1Ggra6720.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 285797..287368 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6720.t1 ID=Ggra6720.t1|Name=Ggra6720.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=524bp
MAVRSGAFNVVRNALASASAQTAQGYPIQAVGALTSKPYAFKTRSWELKS
TESIDIFDGVGSNIRIDTRGSEIMRVLPRLNENVNEEWISDKSRFSYDGL
KRQRLSTPMVRDGDGNLIPVPWERARTFLKNSLVSLHLDNPDGFESHAVI
GPYVDANAALELRSQFYRWFPCGQIHVQEQPRNIPTDFRHVYLHNLTLPQ
LEEADVALLVGSDPRKEAPLLNARLRKASLYGGLVTGVVGCNVNLTYPAQ
HLGNSISTLAAIAQGSHPFAQTIAAAQKPVVIVGNRALQRVDGNTVLKLA
EDIVRNCDGVKEDWDAFCVLHQGANTVGNLDIGFEDKYAGLRAVDTGSWS
ATKVLFLLGADDIDNIDVPNDCFVIYQGHHGDRGASIANIVLPGAAYTEK
DSIYVNTEGRVQKSKLAFFPPGIAKDDALVLRDLLGVEEQLESVRVSLKS
PGLEVLAPHLLRANYVQKSDRVLGMESVLPAGGLQASNAPFQAPVDNFYM
TDPITRSSKTMAKCTRVRDKSNF*
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spliced messenger RNA

>Ggra6720.t1 ID=Ggra6720.t1|Name=Ggra6720.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000056_pilon:285797..287368- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTAAGATCTGGCGCTTTTAATGTCGTTCGCAACGCACTCGCGTC
CGCATCCGCACAAACAGCCCAAGGCTATCCCATTCAAGCTGTCGGCGCCT
TAACTTCCAAACCGTATGCCTTCAAGACTCGCAGTTGGGAGCTCAAGTCC
ACAGAATCGATCGATATTTTTGATGGAGTGGGCTCTAATATCCGCATCGA
CACGCGTGGATCGGAGATTATGCGCGTTTTACCTAGATTGAATGAAAACG
TCAACGAGGAATGGATCTCAGATAAGTCGCGTTTTTCCTACGACGGCCTG
AAGAGACAACGCCTCAGCACTCCAATGGTACGCGATGGAGACGGTAATTT
AATTCCCGTTCCTTGGGAACGCGCTCGCACATTTTTGAAGAACTCCCTCG
TTTCATTGCATCTCGACAACCCTGACGGCTTTGAAAGCCATGCCGTTATC
GGTCCGTACGTCGATGCAAATGCAGCTCTTGAGTTGAGATCCCAGTTTTA
TAGATGGTTCCCTTGTGGACAGATCCATGTTCAAGAGCAGCCGCGTAACA
TCCCAACCGACTTCCGCCACGTTTACCTTCATAACCTCACGCTTCCTCAA
CTCGAGGAGGCAGATGTTGCACTCCTTGTTGGTTCCGATCCTCGAAAAGA
AGCGCCCTTGTTGAACGCTCGTCTTCGAAAGGCGTCGCTTTACGGCGGAC
TCGTCACCGGAGTAGTGGGGTGTAACGTAAACCTCACGTATCCAGCACAG
CATCTTGGGAACTCAATCAGTACTCTTGCTGCGATCGCGCAAGGCTCTCA
TCCATTTGCTCAAACGATTGCAGCTGCCCAAAAACCAGTTGTGATTGTTG
GCAATCGTGCTCTGCAGCGAGTCGATGGTAATACAGTTCTGAAGCTCGCC
GAGGATATTGTTCGGAATTGTGATGGTGTCAAGGAGGATTGGGATGCGTT
TTGTGTGCTGCATCAAGGAGCTAATACGGTGGGAAATCTAGATATTGGGT
TTGAGGACAAGTATGCTGGTTTACGCGCTGTTGATACAGGTTCATGGTCA
GCTACCAAGGTTCTGTTCCTTCTTGGTGCGGACGATATCGACAACATTGA
TGTCCCAAATGATTGCTTTGTTATCTACCAGGGACATCACGGTGATCGCG
GCGCAAGCATTGCAAACATAGTTCTTCCTGGGGCTGCCTACACAGAAAAG
GACTCCATATATGTGAACACGGAAGGCAGAGTTCAGAAATCAAAACTTGC
GTTCTTCCCCCCCGGTATTGCGAAGGATGATGCATTGGTGCTGCGTGATT
TGCTGGGTGTAGAAGAGCAGTTGGAAAGTGTTAGAGTATCGCTCAAGTCA
CCTGGGCTTGAGGTGTTGGCCCCCCACTTGTTGAGGGCAAATTATGTTCA
GAAGTCTGACAGAGTTTTAGGAATGGAGAGCGTTCTACCTGCGGGAGGTT
TGCAAGCAAGTAACGCTCCATTCCAAGCACCTGTTGATAATTTTTATATG
ACCGACCCGATCACTCGAAGCTCTAAGACAATGGCAAAGTGCACGCGTGT
GAGGGACAAGAGCAATTTTTGA
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protein sequence of Ggra6720.t1

>Ggra6720.t1 ID=Ggra6720.t1|Name=Ggra6720.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=524bp
MAVRSGAFNVVRNALASASAQTAQGYPIQAVGALTSKPYAFKTRSWELKS
TESIDIFDGVGSNIRIDTRGSEIMRVLPRLNENVNEEWISDKSRFSYDGL
KRQRLSTPMVRDGDGNLIPVPWERARTFLKNSLVSLHLDNPDGFESHAVI
GPYVDANAALELRSQFYRWFPCGQIHVQEQPRNIPTDFRHVYLHNLTLPQ
LEEADVALLVGSDPRKEAPLLNARLRKASLYGGLVTGVVGCNVNLTYPAQ
HLGNSISTLAAIAQGSHPFAQTIAAAQKPVVIVGNRALQRVDGNTVLKLA
EDIVRNCDGVKEDWDAFCVLHQGANTVGNLDIGFEDKYAGLRAVDTGSWS
ATKVLFLLGADDIDNIDVPNDCFVIYQGHHGDRGASIANIVLPGAAYTEK
DSIYVNTEGRVQKSKLAFFPPGIAKDDALVLRDLLGVEEQLESVRVSLKS
PGLEVLAPHLLRANYVQKSDRVLGMESVLPAGGLQASNAPFQAPVDNFYM
TDPITRSSKTMAKCTRVRDKSNF*
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mRNA from alignment at tig00000056_pilon:285797..287368-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6720.t1 ID=Ggra6720.t1|Name=Ggra6720.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00000056_pilon:285797..287368- (Gracilaria gracilis GNS1m male)
ATGGCAGTAAGATCTGGCGCTTTTAATGTCGTTCGCAACGCACTCGCGTC
CGCATCCGCACAAACAGCCCAAGGCTATCCCATTCAAGCTGTCGGCGCCT
TAACTTCCAAACCGTATGCCTTCAAGACTCGCAGTTGGGAGCTCAAGTCC
ACAGAATCGATCGATATTTTTGATGGAGTGGGCTCTAATATCCGCATCGA
CACGCGTGGATCGGAGATTATGCGCGTTTTACCTAGATTGAATGAAAACG
TCAACGAGGAATGGATCTCAGATAAGTCGCGTTTTTCCTACGACGGCCTG
AAGAGACAACGCCTCAGCACTCCAATGGTACGCGATGGAGACGGTAATTT
AATTCCCGTTCCTTGGGAACGCGCTCGCACATTTTTGAAGAACTCCCTCG
TTTCATTGCATCTCGACAACCCTGACGGCTTTGAAAGCCATGCCGTTATC
GGTCCGTACGTCGATGCAAATGCAGCTCTTGAGTTGAGATCCCAGTTTTA
TAGATGGTTCCCTTGTGGACAGATCCATGTTCAAGAGCAGCCGCGTAACA
TCCCAACCGACTTCCGCCACGTTTACCTTCATAACCTCACGCTTCCTCAA
CTCGAGGAGGCAGATGTTGCACTCCTTGTTGGTTCCGATCCTCGAAAAGA
AGCGCCCTTGTTGAACGCTCGTCTTCGAAAGGCGTCGCTTTACGGCGGAC
TCGTCACCGGAGTAGTGGGGTGTAACGTAAACCTCACGTATCCAGCACAG
CATCTTGGGAACTCAATCAGTACTCTTGCTGCGATCGCGCAAGGCTCTCA
TCCATTTGCTCAAACGATTGCAGCTGCCCAAAAACCAGTTGTGATTGTTG
GCAATCGTGCTCTGCAGCGAGTCGATGGTAATACAGTTCTGAAGCTCGCC
GAGGATATTGTTCGGAATTGTGATGGTGTCAAGGAGGATTGGGATGCGTT
TTGTGTGCTGCATCAAGGAGCTAATACGGTGGGAAATCTAGATATTGGGT
TTGAGGACAAGTATGCTGGTTTACGCGCTGTTGATACAGGTTCATGGTCA
GCTACCAAGGTTCTGTTCCTTCTTGGTGCGGACGATATCGACAACATTGA
TGTCCCAAATGATTGCTTTGTTATCTACCAGGGACATCACGGTGATCGCG
GCGCAAGCATTGCAAACATAGTTCTTCCTGGGGCTGCCTACACAGAAAAG
GACTCCATATATGTGAACACGGAAGGCAGAGTTCAGAAATCAAAACTTGC
GTTCTTCCCCCCCGGTATTGCGAAGGATGATGCATTGGTGCTGCGTGATT
TGCTGGGTGTAGAAGAGCAGTTGGAAAGTGTTAGAGTATCGCTCAAGTCA
CCTGGGCTTGAGGTGTTGGCCCCCCACTTGTTGAGGGCAAATTATGTTCA
GAAGTCTGACAGAGTTTTAGGAATGGAGAGCGTTCTACCTGCGGGAGGTT
TGCAAGCAAGTAACGCTCCATTCCAAGCACCTGTTGATAATTTTTATATG
ACCGACCCGATCACTCGAAGCTCTAAGACAATGGCAAAGTGCACGCGTGT
GAGGGACAAGAGCAATTTTTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:285797..287368-

>Ggra6720.t1 ID=Ggra6720.t1|Name=Ggra6720.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00000056_pilon:285797..287368- (Gracilaria gracilis GNS1m male)
ATGGCAGTAAGATCTGGCGCTTTTAATGTCGTTCGCAACGCACTCGCGTC
CGCATCCGCACAAACAGCCCAAGGCTATCCCATTCAAGCTGTCGGCGCCT
TAACTTCCAAACCGTATGCCTTCAAGACTCGCAGTTGGGAGCTCAAGTCC
ACAGAATCGATCGATATTTTTGATGGAGTGGGCTCTAATATCCGCATCGA
CACGCGTGGATCGGAGATTATGCGCGTTTTACCTAGATTGAATGAAAACG
TCAACGAGGAATGGATCTCAGATAAGTCGCGTTTTTCCTACGACGGCCTG
AAGAGACAACGCCTCAGCACTCCAATGGTACGCGATGGAGACGGTAATTT
AATTCCCGTTCCTTGGGAACGCGCTCGCACATTTTTGAAGAACTCCCTCG
TTTCATTGCATCTCGACAACCCTGACGGCTTTGAAAGCCATGCCGTTATC
GGTCCGTACGTCGATGCAAATGCAGCTCTTGAGTTGAGATCCCAGTTTTA
TAGATGGTTCCCTTGTGGACAGATCCATGTTCAAGAGCAGCCGCGTAACA
TCCCAACCGACTTCCGCCACGTTTACCTTCATAACCTCACGCTTCCTCAA
CTCGAGGAGGCAGATGTTGCACTCCTTGTTGGTTCCGATCCTCGAAAAGA
AGCGCCCTTGTTGAACGCTCGTCTTCGAAAGGCGTCGCTTTACGGCGGAC
TCGTCACCGGAGTAGTGGGGTGTAACGTAAACCTCACGTATCCAGCACAG
CATCTTGGGAACTCAATCAGTACTCTTGCTGCGATCGCGCAAGGCTCTCA
TCCATTTGCTCAAACGATTGCAGCTGCCCAAAAACCAGTTGTGATTGTTG
GCAATCGTGCTCTGCAGCGAGTCGATGGTAATACAGTTCTGAAGCTCGCC
GAGGATATTGTTCGGAATTGTGATGGTGTCAAGGAGGATTGGGATGCGTT
TTGTGTGCTGCATCAAGGAGCTAATACGGTGGGAAATCTAGATATTGGGT
TTGAGGACAAGTATGCTGGTTTACGCGCTGTTGATACAGGTTCATGGTCA
GCTACCAAGGTTCTGTTCCTTCTTGGTGCGGACGATATCGACAACATTGA
TGTCCCAAATGATTGCTTTGTTATCTACCAGGGACATCACGGTGATCGCG
GCGCAAGCATTGCAAACATAGTTCTTCCTGGGGCTGCCTACACAGAAAAG
GACTCCATATATGTGAACACGGAAGGCAGAGTTCAGAAATCAAAACTTGC
GTTCTTCCCCCCCGGTATTGCGAAGGATGATGCATTGGTGCTGCGTGATT
TGCTGGGTGTAGAAGAGCAGTTGGAAAGTGTTAGAGTATCGCTCAAGTCA
CCTGGGCTTGAGGTGTTGGCCCCCCACTTGTTGAGGGCAAATTATGTTCA
GAAGTCTGACAGAGTTTTAGGAATGGAGAGCGTTCTACCTGCGGGAGGTT
TGCAAGCAAGTAACGCTCCATTCCAAGCACCTGTTGATAATTTTTATATG
ACCGACCCGATCACTCGAAGCTCTAAGACAATGGCAAAGTGCACGCGTGT
GAGGGACAAGAGCAATTTTTGA
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