Ggra6716.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6716.t1
Unique Name	Ggra6716.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	723

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:277441..279609 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	85681.XP_006452243.1
PFAMs	DNA_pol_A,DNA_pol_A_exo1
Max annot lvl	35493\|Streptophyta
KEGG rclass	RC02795
KEGG ko	ko:K02335
KEGG Reaction	R00375,R00376,R00377,R00378
KEGG Pathway	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
GOs	GO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Evalue	2.8e-26
EggNOG OGs	COG0749@1\|root,KOG0950@2759\|Eukaryota,37SRP@33090\|Viridiplantae,3GH7Y@35493\|Streptophyta
EC	2.7.7.7
Description	DNA polymerase
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6716	Ggra6716	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 277441..279609 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6716.t1.stop1	Ggra6716.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 277441..277443 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6716.t1.CDS1	Ggra6716.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 277441..279609 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6716.t1.exon1	Ggra6716.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 277441..279609 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6716.t1.start1	Ggra6716.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 279607..279609 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6716.t1	Ggra6716.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 277441..279609 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:277441..279609-
coding sequence from alignment at tig00000056_pilon:277441..279609-

mRNA sequence

>Ggra6716.t1 ID=Ggra6716.t1|Name=Ggra6716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp
MSILRLRTWAGLRKRISFFRKTVTSTALATPQERSGIDGLHRQISIVDDV
RTASKAIEALLSLPEGTPVAWSSQALLPRTSSAMVTLCGYTGDTLQNGTW
TFICPSSRHETAVWELMREYFRDEGTKLICFDRNHFSRHLQSRDIQASGY
IHDVQTMIRMSGLKEKGFDAYVKSILDKRTTSKREAFFSGHDRPWETPSS
EVALSSDEWISPACADAHAVFHIYQRMKKKMLKKGAISAEANNSFEAYEQ
FYALIDQSLGRIGKQRLFLNEDTLSDVLTRFEYDRMSQQSIFERWAVQYC
DEVSQVEMSSPMLRHLLFAPYQNKYNMNEKIPTEKVFAGRQRIAGRHDTT
SDSKRSRARKRKVSIRGAGLVAQKHASNGVPSVSIPALQTLLATFSSSED
EELREACSAINGLLNAKAAKLASQNFEKRVEQVVDSDRQIRPRITVDFER
GRLQTNVSSNVLELLRAKKDHELLLLDFENLSLCALADLSGCERLKKRLR
LKDAAHAYLAKEFSKEISNALYDGSCVLRGEGVTVENAFPEKFLMAKMLD
TCMSKGPRIEIVKKVMKCDQARALQLVQGWFQVHPVVRSWCEQEESRMRD
RKVAETIRGRQRALKIGRGKRGTFSVNEGMTFAIEGSAGDFMMQSVLKLV
ESERINALRWQVALANDDRIVLHGPSWSAEEASAAVVDTLTSFNDGAPII
ESALHQLKVLRGENFRAMETLS*

spliced messenger RNA

>Ggra6716.t1 ID=Ggra6716.t1|Name=Ggra6716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2169bp|location=Sequence derived from alignment at tig00000056_pilon:277441..279609- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGATCTTGCGTCTCAGGACGTGGGCTGGTCTGCGCAAACGCATTTC
TTTCTTTCGAAAGACGGTCACGTCTACAGCTCTAGCAACGCCTCAAGAAA
GGAGCGGCATTGATGGGCTTCATCGACAGATTTCAATTGTGGATGATGTA
AGAACCGCTTCAAAGGCAATCGAGGCTTTACTTTCCTTGCCCGAAGGCAC
ACCAGTGGCATGGAGCTCTCAGGCATTGCTTCCCAGAACATCATCGGCTA
TGGTAACCTTATGCGGTTATACGGGAGATACATTGCAGAATGGCACATGG
ACATTCATATGTCCCTCTTCAAGACATGAAACTGCAGTATGGGAACTCAT
GCGTGAGTATTTTCGAGACGAGGGGACAAAGTTGATATGCTTCGACAGAA
ACCACTTTTCTCGTCATTTGCAAAGCAGGGATATACAGGCAAGTGGATAC
ATTCATGACGTTCAAACGATGATCCGGATGTCAGGTTTAAAGGAAAAGGG
CTTCGACGCTTACGTGAAAAGCATTCTGGATAAGCGTACGACAAGCAAAC
GAGAGGCCTTTTTCAGTGGTCATGACCGCCCTTGGGAGACACCGTCCAGT
GAAGTAGCACTTTCTAGTGACGAATGGATTTCTCCTGCATGTGCTGATGC
ACATGCAGTTTTCCACATCTATCAGAGAATGAAAAAGAAAATGCTGAAGA
AAGGCGCGATATCAGCTGAAGCAAACAACAGTTTTGAAGCGTATGAGCAG
TTTTATGCTCTGATTGATCAGAGCTTGGGCAGAATTGGAAAGCAAAGACT
TTTTCTCAATGAAGATACGCTTAGCGACGTCCTGACGCGTTTCGAGTACG
ATCGAATGTCACAGCAATCTATTTTCGAAAGGTGGGCTGTACAATACTGC
GACGAAGTGTCGCAAGTAGAAATGTCTTCTCCAATGCTACGACACTTGCT
TTTCGCCCCATATCAGAACAAATACAACATGAACGAAAAAATCCCAACAG
AGAAGGTTTTTGCCGGTCGCCAACGAATAGCTGGAAGACATGACACCACT
TCAGACAGTAAGAGAAGTCGGGCAAGGAAAAGGAAAGTATCGATAAGAGG
GGCTGGATTGGTAGCTCAGAAGCACGCATCCAATGGTGTGCCGTCGGTGA
GTATTCCTGCTTTGCAGACCTTGCTCGCGACGTTTAGCTCATCAGAGGAT
GAAGAGCTAAGAGAGGCATGTTCTGCCATCAATGGATTGTTGAATGCTAA
AGCAGCAAAGTTAGCATCACAAAACTTCGAAAAGAGAGTGGAGCAAGTTG
TGGATTCTGACAGACAAATAAGGCCGAGGATCACAGTCGATTTTGAGCGA
GGTAGACTGCAAACAAATGTTTCCTCCAATGTTCTTGAGCTGCTTCGGGC
CAAAAAAGACCATGAGTTGCTTCTTCTTGACTTCGAAAATTTGAGTCTGT
GTGCCTTAGCAGATCTTTCTGGTTGTGAGCGTCTGAAAAAAAGGCTGCGA
CTGAAGGATGCGGCTCACGCTTACCTCGCAAAAGAATTCTCGAAAGAAAT
TTCCAATGCTCTTTATGACGGCAGCTGTGTTTTGAGAGGAGAAGGCGTAA
CGGTTGAAAACGCATTCCCAGAAAAGTTTCTCATGGCAAAGATGCTTGAC
ACCTGCATGAGTAAGGGGCCGCGAATAGAGATTGTTAAGAAAGTCATGAA
ATGTGATCAGGCTCGGGCTTTGCAACTTGTACAAGGATGGTTTCAAGTGC
ATCCTGTAGTTCGATCATGGTGTGAACAGGAGGAATCGCGAATGAGAGAT
CGAAAGGTAGCGGAGACGATACGGGGACGGCAGCGGGCATTGAAAATCGG
GAGGGGGAAGCGAGGCACGTTTTCTGTGAATGAGGGAATGACGTTTGCAA
TCGAGGGTTCGGCTGGAGATTTCATGATGCAGAGCGTGTTGAAACTGGTT
GAGAGCGAAAGAATCAATGCGTTGAGATGGCAAGTGGCGCTTGCTAATGA
TGATAGGATTGTGCTACATGGGCCGAGCTGGTCAGCTGAAGAGGCCAGCG
CTGCTGTCGTAGACACACTGACTTCATTCAATGACGGCGCCCCCATAATC
GAAAGCGCCTTGCATCAGCTCAAAGTTCTTCGTGGTGAGAATTTCCGAGC
GATGGAGACACTGTCATAA

protein sequence of Ggra6716.t1

>Ggra6716.t1 ID=Ggra6716.t1|Name=Ggra6716.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=723bp
MSILRLRTWAGLRKRISFFRKTVTSTALATPQERSGIDGLHRQISIVDDV
RTASKAIEALLSLPEGTPVAWSSQALLPRTSSAMVTLCGYTGDTLQNGTW
TFICPSSRHETAVWELMREYFRDEGTKLICFDRNHFSRHLQSRDIQASGY
IHDVQTMIRMSGLKEKGFDAYVKSILDKRTTSKREAFFSGHDRPWETPSS
EVALSSDEWISPACADAHAVFHIYQRMKKKMLKKGAISAEANNSFEAYEQ
FYALIDQSLGRIGKQRLFLNEDTLSDVLTRFEYDRMSQQSIFERWAVQYC
DEVSQVEMSSPMLRHLLFAPYQNKYNMNEKIPTEKVFAGRQRIAGRHDTT
SDSKRSRARKRKVSIRGAGLVAQKHASNGVPSVSIPALQTLLATFSSSED
EELREACSAINGLLNAKAAKLASQNFEKRVEQVVDSDRQIRPRITVDFER
GRLQTNVSSNVLELLRAKKDHELLLLDFENLSLCALADLSGCERLKKRLR
LKDAAHAYLAKEFSKEISNALYDGSCVLRGEGVTVENAFPEKFLMAKMLD
TCMSKGPRIEIVKKVMKCDQARALQLVQGWFQVHPVVRSWCEQEESRMRD
RKVAETIRGRQRALKIGRGKRGTFSVNEGMTFAIEGSAGDFMMQSVLKLV
ESERINALRWQVALANDDRIVLHGPSWSAEEASAAVVDTLTSFNDGAPII
ESALHQLKVLRGENFRAMETLS*

mRNA from alignment at tig00000056_pilon:277441..279609-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6716.t1 ID=Ggra6716.t1|Name=Ggra6716.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2169bp|location=Sequence derived from alignment at tig00000056_pilon:277441..279609- (Gracilaria gracilis GNS1m male)
ATGTCGATCTTGCGTCTCAGGACGTGGGCTGGTCTGCGCAAACGCATTTC
TTTCTTTCGAAAGACGGTCACGTCTACAGCTCTAGCAACGCCTCAAGAAA
GGAGCGGCATTGATGGGCTTCATCGACAGATTTCAATTGTGGATGATGTA
AGAACCGCTTCAAAGGCAATCGAGGCTTTACTTTCCTTGCCCGAAGGCAC
ACCAGTGGCATGGAGCTCTCAGGCATTGCTTCCCAGAACATCATCGGCTA
TGGTAACCTTATGCGGTTATACGGGAGATACATTGCAGAATGGCACATGG
ACATTCATATGTCCCTCTTCAAGACATGAAACTGCAGTATGGGAACTCAT
GCGTGAGTATTTTCGAGACGAGGGGACAAAGTTGATATGCTTCGACAGAA
ACCACTTTTCTCGTCATTTGCAAAGCAGGGATATACAGGCAAGTGGATAC
ATTCATGACGTTCAAACGATGATCCGGATGTCAGGTTTAAAGGAAAAGGG
CTTCGACGCTTACGTGAAAAGCATTCTGGATAAGCGTACGACAAGCAAAC
GAGAGGCCTTTTTCAGTGGTCATGACCGCCCTTGGGAGACACCGTCCAGT
GAAGTAGCACTTTCTAGTGACGAATGGATTTCTCCTGCATGTGCTGATGC
ACATGCAGTTTTCCACATCTATCAGAGAATGAAAAAGAAAATGCTGAAGA
AAGGCGCGATATCAGCTGAAGCAAACAACAGTTTTGAAGCGTATGAGCAG
TTTTATGCTCTGATTGATCAGAGCTTGGGCAGAATTGGAAAGCAAAGACT
TTTTCTCAATGAAGATACGCTTAGCGACGTCCTGACGCGTTTCGAGTACG
ATCGAATGTCACAGCAATCTATTTTCGAAAGGTGGGCTGTACAATACTGC
GACGAAGTGTCGCAAGTAGAAATGTCTTCTCCAATGCTACGACACTTGCT
TTTCGCCCCATATCAGAACAAATACAACATGAACGAAAAAATCCCAACAG
AGAAGGTTTTTGCCGGTCGCCAACGAATAGCTGGAAGACATGACACCACT
TCAGACAGTAAGAGAAGTCGGGCAAGGAAAAGGAAAGTATCGATAAGAGG
GGCTGGATTGGTAGCTCAGAAGCACGCATCCAATGGTGTGCCGTCGGTGA
GTATTCCTGCTTTGCAGACCTTGCTCGCGACGTTTAGCTCATCAGAGGAT
GAAGAGCTAAGAGAGGCATGTTCTGCCATCAATGGATTGTTGAATGCTAA
AGCAGCAAAGTTAGCATCACAAAACTTCGAAAAGAGAGTGGAGCAAGTTG
TGGATTCTGACAGACAAATAAGGCCGAGGATCACAGTCGATTTTGAGCGA
GGTAGACTGCAAACAAATGTTTCCTCCAATGTTCTTGAGCTGCTTCGGGC
CAAAAAAGACCATGAGTTGCTTCTTCTTGACTTCGAAAATTTGAGTCTGT
GTGCCTTAGCAGATCTTTCTGGTTGTGAGCGTCTGAAAAAAAGGCTGCGA
CTGAAGGATGCGGCTCACGCTTACCTCGCAAAAGAATTCTCGAAAGAAAT
TTCCAATGCTCTTTATGACGGCAGCTGTGTTTTGAGAGGAGAAGGCGTAA
CGGTTGAAAACGCATTCCCAGAAAAGTTTCTCATGGCAAAGATGCTTGAC
ACCTGCATGAGTAAGGGGCCGCGAATAGAGATTGTTAAGAAAGTCATGAA
ATGTGATCAGGCTCGGGCTTTGCAACTTGTACAAGGATGGTTTCAAGTGC
ATCCTGTAGTTCGATCATGGTGTGAACAGGAGGAATCGCGAATGAGAGAT
CGAAAGGTAGCGGAGACGATACGGGGACGGCAGCGGGCATTGAAAATCGG
GAGGGGGAAGCGAGGCACGTTTTCTGTGAATGAGGGAATGACGTTTGCAA
TCGAGGGTTCGGCTGGAGATTTCATGATGCAGAGCGTGTTGAAACTGGTT
GAGAGCGAAAGAATCAATGCGTTGAGATGGCAAGTGGCGCTTGCTAATGA
TGATAGGATTGTGCTACATGGGCCGAGCTGGTCAGCTGAAGAGGCCAGCG
CTGCTGTCGTAGACACACTGACTTCATTCAATGACGGCGCCCCCATAATC
GAAAGCGCCTTGCATCAGCTCAAAGTTCTTCGTGGTGAGAATTTCCGAGC
GATGGAGACACTGTCATAA

Coding sequence (CDS) from alignment at tig00000056_pilon:277441..279609-

>Ggra6716.t1 ID=Ggra6716.t1|Name=Ggra6716.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2169bp|location=Sequence derived from alignment at tig00000056_pilon:277441..279609- (Gracilaria gracilis GNS1m male)
ATGTCGATCTTGCGTCTCAGGACGTGGGCTGGTCTGCGCAAACGCATTTC
TTTCTTTCGAAAGACGGTCACGTCTACAGCTCTAGCAACGCCTCAAGAAA
GGAGCGGCATTGATGGGCTTCATCGACAGATTTCAATTGTGGATGATGTA
AGAACCGCTTCAAAGGCAATCGAGGCTTTACTTTCCTTGCCCGAAGGCAC
ACCAGTGGCATGGAGCTCTCAGGCATTGCTTCCCAGAACATCATCGGCTA
TGGTAACCTTATGCGGTTATACGGGAGATACATTGCAGAATGGCACATGG
ACATTCATATGTCCCTCTTCAAGACATGAAACTGCAGTATGGGAACTCAT
GCGTGAGTATTTTCGAGACGAGGGGACAAAGTTGATATGCTTCGACAGAA
ACCACTTTTCTCGTCATTTGCAAAGCAGGGATATACAGGCAAGTGGATAC
ATTCATGACGTTCAAACGATGATCCGGATGTCAGGTTTAAAGGAAAAGGG
CTTCGACGCTTACGTGAAAAGCATTCTGGATAAGCGTACGACAAGCAAAC
GAGAGGCCTTTTTCAGTGGTCATGACCGCCCTTGGGAGACACCGTCCAGT
GAAGTAGCACTTTCTAGTGACGAATGGATTTCTCCTGCATGTGCTGATGC
ACATGCAGTTTTCCACATCTATCAGAGAATGAAAAAGAAAATGCTGAAGA
AAGGCGCGATATCAGCTGAAGCAAACAACAGTTTTGAAGCGTATGAGCAG
TTTTATGCTCTGATTGATCAGAGCTTGGGCAGAATTGGAAAGCAAAGACT
TTTTCTCAATGAAGATACGCTTAGCGACGTCCTGACGCGTTTCGAGTACG
ATCGAATGTCACAGCAATCTATTTTCGAAAGGTGGGCTGTACAATACTGC
GACGAAGTGTCGCAAGTAGAAATGTCTTCTCCAATGCTACGACACTTGCT
TTTCGCCCCATATCAGAACAAATACAACATGAACGAAAAAATCCCAACAG
AGAAGGTTTTTGCCGGTCGCCAACGAATAGCTGGAAGACATGACACCACT
TCAGACAGTAAGAGAAGTCGGGCAAGGAAAAGGAAAGTATCGATAAGAGG
GGCTGGATTGGTAGCTCAGAAGCACGCATCCAATGGTGTGCCGTCGGTGA
GTATTCCTGCTTTGCAGACCTTGCTCGCGACGTTTAGCTCATCAGAGGAT
GAAGAGCTAAGAGAGGCATGTTCTGCCATCAATGGATTGTTGAATGCTAA
AGCAGCAAAGTTAGCATCACAAAACTTCGAAAAGAGAGTGGAGCAAGTTG
TGGATTCTGACAGACAAATAAGGCCGAGGATCACAGTCGATTTTGAGCGA
GGTAGACTGCAAACAAATGTTTCCTCCAATGTTCTTGAGCTGCTTCGGGC
CAAAAAAGACCATGAGTTGCTTCTTCTTGACTTCGAAAATTTGAGTCTGT
GTGCCTTAGCAGATCTTTCTGGTTGTGAGCGTCTGAAAAAAAGGCTGCGA
CTGAAGGATGCGGCTCACGCTTACCTCGCAAAAGAATTCTCGAAAGAAAT
TTCCAATGCTCTTTATGACGGCAGCTGTGTTTTGAGAGGAGAAGGCGTAA
CGGTTGAAAACGCATTCCCAGAAAAGTTTCTCATGGCAAAGATGCTTGAC
ACCTGCATGAGTAAGGGGCCGCGAATAGAGATTGTTAAGAAAGTCATGAA
ATGTGATCAGGCTCGGGCTTTGCAACTTGTACAAGGATGGTTTCAAGTGC
ATCCTGTAGTTCGATCATGGTGTGAACAGGAGGAATCGCGAATGAGAGAT
CGAAAGGTAGCGGAGACGATACGGGGACGGCAGCGGGCATTGAAAATCGG
GAGGGGGAAGCGAGGCACGTTTTCTGTGAATGAGGGAATGACGTTTGCAA
TCGAGGGTTCGGCTGGAGATTTCATGATGCAGAGCGTGTTGAAACTGGTT
GAGAGCGAAAGAATCAATGCGTTGAGATGGCAAGTGGCGCTTGCTAATGA
TGATAGGATTGTGCTACATGGGCCGAGCTGGTCAGCTGAAGAGGCCAGCG
CTGCTGTCGTAGACACACTGACTTCATTCAATGACGGCGCCCCCATAATC
GAAAGCGCCTTGCATCAGCTCAAAGTTCTTCGTGGTGAGAATTTCCGAGC
GATGGAGACACTGTCATAA