Ggra6715.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6715.t1
Unique NameGgra6715.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length786
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:274740..277097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO270CT
PFAMsDNA_pol_A,DNA_pol_A_exo1
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K02335
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
GOsGO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Evalue5.48e-214
EggNOG OGsCOG0749@1|root,KOG0950@2759|Eukaryota
EC2.7.7.7
Descriptionplastid DNA replication
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6715Ggra6715Gracilaria gracilis GNS1m malegenetig00000056_pilon 274740..277097 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6715.t1.stop1Ggra6715.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 274740..274742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6715.t1.CDS1Ggra6715.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 274740..277097 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6715.t1.exon1Ggra6715.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 274740..277097 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6715.t1.start1Ggra6715.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 277095..277097 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6715.t1Ggra6715.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 274740..277097 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6715.t1 ID=Ggra6715.t1|Name=Ggra6715.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=786bp
MPGLALPLRLGTRLPSRRLTHAQSAATLPISPPRYTPYVTPHAPPPPEHV
TVVQDLRTAARVVSKLFALPHDTFVAWDTETTGVDPSKQTPVGNGRVLCA
TAYAGHHVDFGTGPRLFVDCMKPGVLHALRPYFESENTPKVWHNYSFDRH
VLGNHGITPRGFAGDTMHMARLVDSSLQKYSLEHLCKHFLESDMRKVSMS
ERFGLLDGKKAALNTLSIHDSPEMRDEWIDYASMDAELTHRLCHRLKNEL
QNMDIHGSNSVPEIVERYNSLYELYTSLLVPFGELLTDMESMGFKVDTDW
LKEAAVHARGEQLAYEDRFRSWAQKHSPDAKYMNVHSDLQKQQLFFAPCT
NKFDKKESMPRRKSFNLELTGELRERYLKELQQSESERGQELFKIYTEPN
TKKKVKCDVVLHGLGKKPDEYTAKGWPSVSAKAMKKLAKKMSKKDVSDNN
ELVEAIEDLTNATSVSSLMSSFILPLQQWPGKDGRIHASLNLNTETGRLS
SRRPNLQNQPALEKDRYKIRKAFVPENGKSLIVADYGQLELRLLAHITNC
KSMIEAFEAGGDFHSRTALTMFDNVKAAVARGDCILEREEGDENSSDIPL
LKDMFPTERRKAKTLNFSIAYGKTIVGLARDWNTTEEEAAETLNLWYKER
QEVRTWQRQCKKFLQQHHFVETMLGRRRRLPDIVSVKPHERFHAQRAAIN
APLQGSAADLVMGAMLKLHRDRILRALGWKIILQVHDEIILEGPEESADI
ALPIVVKKMRNPLDINLRVELTVDAKCAKSWYEAK*
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spliced messenger RNA

>Ggra6715.t1 ID=Ggra6715.t1|Name=Ggra6715.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2358bp|location=Sequence derived from alignment at tig00000056_pilon:274740..277097- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGGTCTTGCTCTCCCGCTGCGCCTTGGAACTCGTCTGCCTTCTCG
CCGTCTCACGCACGCGCAGTCGGCCGCTACGCTCCCTATATCTCCGCCGC
GATATACGCCGTACGTCACACCACACGCACCACCACCACCAGAGCATGTA
ACTGTTGTGCAGGATCTGCGGACAGCGGCTAGAGTTGTCTCTAAACTCTT
CGCGCTCCCGCATGATACCTTTGTAGCGTGGGATACTGAAACTACGGGAG
TTGACCCCTCGAAGCAGACCCCTGTTGGCAATGGGCGTGTTCTGTGTGCC
ACGGCGTATGCAGGTCATCATGTTGATTTTGGAACGGGGCCAAGACTGTT
TGTTGATTGTATGAAACCAGGAGTGCTCCATGCGCTGCGTCCTTATTTTG
AAAGTGAGAACACACCGAAAGTGTGGCATAATTACTCTTTCGACAGACAC
GTTTTGGGTAATCATGGAATTACTCCTCGTGGCTTTGCTGGCGATACCAT
GCACATGGCCAGACTTGTTGACTCTTCACTTCAAAAGTACTCATTGGAGC
ACCTGTGCAAGCATTTCCTGGAATCTGATATGCGGAAGGTCAGCATGTCC
GAACGTTTTGGCTTGCTTGATGGCAAGAAAGCTGCACTGAACACTCTCAG
CATACATGACAGTCCGGAAATGAGAGATGAATGGATCGACTATGCGTCGA
TGGACGCAGAGCTCACGCACCGCTTGTGTCATCGACTGAAGAACGAGCTG
CAGAACATGGATATTCATGGCAGCAATAGCGTCCCGGAAATCGTGGAACG
GTATAACAGTCTTTATGAATTGTATACTAGCTTGCTTGTTCCATTTGGCG
AGCTTCTTACAGATATGGAAAGTATGGGGTTCAAAGTTGACACTGACTGG
TTGAAAGAGGCCGCAGTTCATGCGCGGGGTGAACAGCTGGCGTATGAAGA
CAGGTTTAGAAGCTGGGCACAAAAGCATTCCCCAGATGCGAAGTACATGA
ATGTTCATTCTGACCTTCAGAAGCAACAGCTCTTCTTTGCCCCATGCACG
AACAAATTTGACAAGAAAGAAAGCATGCCGCGTCGGAAGTCGTTCAATCT
GGAATTGACGGGGGAACTGAGAGAAAGGTACCTAAAAGAACTGCAGCAAA
GCGAGTCTGAGAGGGGACAAGAGCTGTTCAAGATCTATACAGAACCAAAC
ACAAAGAAGAAAGTGAAGTGTGATGTTGTATTGCATGGCTTGGGGAAGAA
GCCGGATGAATATACTGCTAAGGGATGGCCAAGCGTTTCTGCAAAGGCAA
TGAAGAAGTTGGCAAAGAAGATGTCCAAGAAAGATGTTAGCGATAATAAC
GAGCTCGTCGAAGCCATTGAAGACCTGACCAATGCCACTTCAGTTTCAAG
CCTAATGTCAAGTTTTATACTCCCACTTCAACAGTGGCCCGGGAAAGATG
GGCGAATCCACGCGTCTCTGAACTTGAATACCGAGACAGGGCGACTTTCC
TCACGGCGACCGAATTTGCAGAACCAGCCTGCGTTAGAAAAGGATCGGTA
CAAAATTCGCAAAGCCTTTGTCCCCGAAAACGGAAAATCTCTTATTGTGG
CCGATTATGGTCAACTAGAGTTACGTTTGCTAGCTCATATCACTAACTGC
AAGTCCATGATTGAAGCGTTCGAAGCTGGTGGAGACTTTCATTCTCGAAC
TGCGTTGACCATGTTCGACAACGTAAAGGCGGCAGTCGCACGCGGGGATT
GTATCCTCGAACGAGAAGAAGGTGATGAGAACAGCAGTGATATACCTCTG
CTAAAGGATATGTTTCCCACTGAAAGAAGAAAAGCAAAGACATTGAACTT
TTCAATTGCGTATGGAAAGACAATTGTTGGCCTTGCGAGGGATTGGAATA
CAACTGAAGAGGAAGCAGCGGAAACACTGAACTTATGGTACAAAGAGCGT
CAGGAGGTACGAACGTGGCAGCGGCAGTGTAAGAAATTTCTCCAGCAACA
CCACTTTGTCGAAACAATGCTTGGCAGGAGGAGACGTCTACCAGACATAG
TGTCCGTAAAACCACATGAGCGATTCCACGCGCAACGAGCTGCAATTAAT
GCCCCGCTGCAGGGGTCTGCGGCGGATCTGGTTATGGGTGCGATGCTTAA
ACTGCATCGAGATCGAATTCTAAGAGCTTTGGGTTGGAAGATAATTCTTC
AAGTTCATGACGAAATTATTCTTGAAGGTCCGGAAGAATCAGCTGACATC
GCTCTGCCAATCGTAGTTAAGAAAATGAGGAACCCTTTGGATATTAATCT
TCGAGTTGAGTTGACTGTGGATGCAAAATGTGCAAAGTCTTGGTACGAAG
CAAAATGA
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protein sequence of Ggra6715.t1

>Ggra6715.t1 ID=Ggra6715.t1|Name=Ggra6715.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=786bp
MPGLALPLRLGTRLPSRRLTHAQSAATLPISPPRYTPYVTPHAPPPPEHV
TVVQDLRTAARVVSKLFALPHDTFVAWDTETTGVDPSKQTPVGNGRVLCA
TAYAGHHVDFGTGPRLFVDCMKPGVLHALRPYFESENTPKVWHNYSFDRH
VLGNHGITPRGFAGDTMHMARLVDSSLQKYSLEHLCKHFLESDMRKVSMS
ERFGLLDGKKAALNTLSIHDSPEMRDEWIDYASMDAELTHRLCHRLKNEL
QNMDIHGSNSVPEIVERYNSLYELYTSLLVPFGELLTDMESMGFKVDTDW
LKEAAVHARGEQLAYEDRFRSWAQKHSPDAKYMNVHSDLQKQQLFFAPCT
NKFDKKESMPRRKSFNLELTGELRERYLKELQQSESERGQELFKIYTEPN
TKKKVKCDVVLHGLGKKPDEYTAKGWPSVSAKAMKKLAKKMSKKDVSDNN
ELVEAIEDLTNATSVSSLMSSFILPLQQWPGKDGRIHASLNLNTETGRLS
SRRPNLQNQPALEKDRYKIRKAFVPENGKSLIVADYGQLELRLLAHITNC
KSMIEAFEAGGDFHSRTALTMFDNVKAAVARGDCILEREEGDENSSDIPL
LKDMFPTERRKAKTLNFSIAYGKTIVGLARDWNTTEEEAAETLNLWYKER
QEVRTWQRQCKKFLQQHHFVETMLGRRRRLPDIVSVKPHERFHAQRAAIN
APLQGSAADLVMGAMLKLHRDRILRALGWKIILQVHDEIILEGPEESADI
ALPIVVKKMRNPLDINLRVELTVDAKCAKSWYEAK*
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mRNA from alignment at tig00000056_pilon:274740..277097-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6715.t1 ID=Ggra6715.t1|Name=Ggra6715.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2358bp|location=Sequence derived from alignment at tig00000056_pilon:274740..277097- (Gracilaria gracilis GNS1m male)
ATGCCCGGTCTTGCTCTCCCGCTGCGCCTTGGAACTCGTCTGCCTTCTCG CCGTCTCACGCACGCGCAGTCGGCCGCTACGCTCCCTATATCTCCGCCGC GATATACGCCGTACGTCACACCACACGCACCACCACCACCAGAGCATGTA ACTGTTGTGCAGGATCTGCGGACAGCGGCTAGAGTTGTCTCTAAACTCTT CGCGCTCCCGCATGATACCTTTGTAGCGTGGGATACTGAAACTACGGGAG TTGACCCCTCGAAGCAGACCCCTGTTGGCAATGGGCGTGTTCTGTGTGCC ACGGCGTATGCAGGTCATCATGTTGATTTTGGAACGGGGCCAAGACTGTT TGTTGATTGTATGAAACCAGGAGTGCTCCATGCGCTGCGTCCTTATTTTG AAAGTGAGAACACACCGAAAGTGTGGCATAATTACTCTTTCGACAGACAC GTTTTGGGTAATCATGGAATTACTCCTCGTGGCTTTGCTGGCGATACCAT GCACATGGCCAGACTTGTTGACTCTTCACTTCAAAAGTACTCATTGGAGC ACCTGTGCAAGCATTTCCTGGAATCTGATATGCGGAAGGTCAGCATGTCC GAACGTTTTGGCTTGCTTGATGGCAAGAAAGCTGCACTGAACACTCTCAG CATACATGACAGTCCGGAAATGAGAGATGAATGGATCGACTATGCGTCGA TGGACGCAGAGCTCACGCACCGCTTGTGTCATCGACTGAAGAACGAGCTG CAGAACATGGATATTCATGGCAGCAATAGCGTCCCGGAAATCGTGGAACG GTATAACAGTCTTTATGAATTGTATACTAGCTTGCTTGTTCCATTTGGCG AGCTTCTTACAGATATGGAAAGTATGGGGTTCAAAGTTGACACTGACTGG TTGAAAGAGGCCGCAGTTCATGCGCGGGGTGAACAGCTGGCGTATGAAGA CAGGTTTAGAAGCTGGGCACAAAAGCATTCCCCAGATGCGAAGTACATGA ATGTTCATTCTGACCTTCAGAAGCAACAGCTCTTCTTTGCCCCATGCACG AACAAATTTGACAAGAAAGAAAGCATGCCGCGTCGGAAGTCGTTCAATCT GGAATTGACGGGGGAACTGAGAGAAAGGTACCTAAAAGAACTGCAGCAAA GCGAGTCTGAGAGGGGACAAGAGCTGTTCAAGATCTATACAGAACCAAAC ACAAAGAAGAAAGTGAAGTGTGATGTTGTATTGCATGGCTTGGGGAAGAA GCCGGATGAATATACTGCTAAGGGATGGCCAAGCGTTTCTGCAAAGGCAA TGAAGAAGTTGGCAAAGAAGATGTCCAAGAAAGATGTTAGCGATAATAAC GAGCTCGTCGAAGCCATTGAAGACCTGACCAATGCCACTTCAGTTTCAAG CCTAATGTCAAGTTTTATACTCCCACTTCAACAGTGGCCCGGGAAAGATG GGCGAATCCACGCGTCTCTGAACTTGAATACCGAGACAGGGCGACTTTCC TCACGGCGACCGAATTTGCAGAACCAGCCTGCGTTAGAAAAGGATCGGTA CAAAATTCGCAAAGCCTTTGTCCCCGAAAACGGAAAATCTCTTATTGTGG CCGATTATGGTCAACTAGAGTTACGTTTGCTAGCTCATATCACTAACTGC AAGTCCATGATTGAAGCGTTCGAAGCTGGTGGAGACTTTCATTCTCGAAC TGCGTTGACCATGTTCGACAACGTAAAGGCGGCAGTCGCACGCGGGGATT GTATCCTCGAACGAGAAGAAGGTGATGAGAACAGCAGTGATATACCTCTG CTAAAGGATATGTTTCCCACTGAAAGAAGAAAAGCAAAGACATTGAACTT TTCAATTGCGTATGGAAAGACAATTGTTGGCCTTGCGAGGGATTGGAATA CAACTGAAGAGGAAGCAGCGGAAACACTGAACTTATGGTACAAAGAGCGT CAGGAGGTACGAACGTGGCAGCGGCAGTGTAAGAAATTTCTCCAGCAACA CCACTTTGTCGAAACAATGCTTGGCAGGAGGAGACGTCTACCAGACATAG TGTCCGTAAAACCACATGAGCGATTCCACGCGCAACGAGCTGCAATTAAT GCCCCGCTGCAGGGGTCTGCGGCGGATCTGGTTATGGGTGCGATGCTTAA ACTGCATCGAGATCGAATTCTAAGAGCTTTGGGTTGGAAGATAATTCTTC AAGTTCATGACGAAATTATTCTTGAAGGTCCGGAAGAATCAGCTGACATC GCTCTGCCAATCGTAGTTAAGAAAATGAGGAACCCTTTGGATATTAATCT TCGAGTTGAGTTGACTGTGGATGCAAAATGTGCAAAGTCTTGGTACGAAG CAAAATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:274740..277097-

>Ggra6715.t1 ID=Ggra6715.t1|Name=Ggra6715.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2358bp|location=Sequence derived from alignment at tig00000056_pilon:274740..277097- (Gracilaria gracilis GNS1m male)
ATGCCCGGTCTTGCTCTCCCGCTGCGCCTTGGAACTCGTCTGCCTTCTCG
CCGTCTCACGCACGCGCAGTCGGCCGCTACGCTCCCTATATCTCCGCCGC
GATATACGCCGTACGTCACACCACACGCACCACCACCACCAGAGCATGTA
ACTGTTGTGCAGGATCTGCGGACAGCGGCTAGAGTTGTCTCTAAACTCTT
CGCGCTCCCGCATGATACCTTTGTAGCGTGGGATACTGAAACTACGGGAG
TTGACCCCTCGAAGCAGACCCCTGTTGGCAATGGGCGTGTTCTGTGTGCC
ACGGCGTATGCAGGTCATCATGTTGATTTTGGAACGGGGCCAAGACTGTT
TGTTGATTGTATGAAACCAGGAGTGCTCCATGCGCTGCGTCCTTATTTTG
AAAGTGAGAACACACCGAAAGTGTGGCATAATTACTCTTTCGACAGACAC
GTTTTGGGTAATCATGGAATTACTCCTCGTGGCTTTGCTGGCGATACCAT
GCACATGGCCAGACTTGTTGACTCTTCACTTCAAAAGTACTCATTGGAGC
ACCTGTGCAAGCATTTCCTGGAATCTGATATGCGGAAGGTCAGCATGTCC
GAACGTTTTGGCTTGCTTGATGGCAAGAAAGCTGCACTGAACACTCTCAG
CATACATGACAGTCCGGAAATGAGAGATGAATGGATCGACTATGCGTCGA
TGGACGCAGAGCTCACGCACCGCTTGTGTCATCGACTGAAGAACGAGCTG
CAGAACATGGATATTCATGGCAGCAATAGCGTCCCGGAAATCGTGGAACG
GTATAACAGTCTTTATGAATTGTATACTAGCTTGCTTGTTCCATTTGGCG
AGCTTCTTACAGATATGGAAAGTATGGGGTTCAAAGTTGACACTGACTGG
TTGAAAGAGGCCGCAGTTCATGCGCGGGGTGAACAGCTGGCGTATGAAGA
CAGGTTTAGAAGCTGGGCACAAAAGCATTCCCCAGATGCGAAGTACATGA
ATGTTCATTCTGACCTTCAGAAGCAACAGCTCTTCTTTGCCCCATGCACG
AACAAATTTGACAAGAAAGAAAGCATGCCGCGTCGGAAGTCGTTCAATCT
GGAATTGACGGGGGAACTGAGAGAAAGGTACCTAAAAGAACTGCAGCAAA
GCGAGTCTGAGAGGGGACAAGAGCTGTTCAAGATCTATACAGAACCAAAC
ACAAAGAAGAAAGTGAAGTGTGATGTTGTATTGCATGGCTTGGGGAAGAA
GCCGGATGAATATACTGCTAAGGGATGGCCAAGCGTTTCTGCAAAGGCAA
TGAAGAAGTTGGCAAAGAAGATGTCCAAGAAAGATGTTAGCGATAATAAC
GAGCTCGTCGAAGCCATTGAAGACCTGACCAATGCCACTTCAGTTTCAAG
CCTAATGTCAAGTTTTATACTCCCACTTCAACAGTGGCCCGGGAAAGATG
GGCGAATCCACGCGTCTCTGAACTTGAATACCGAGACAGGGCGACTTTCC
TCACGGCGACCGAATTTGCAGAACCAGCCTGCGTTAGAAAAGGATCGGTA
CAAAATTCGCAAAGCCTTTGTCCCCGAAAACGGAAAATCTCTTATTGTGG
CCGATTATGGTCAACTAGAGTTACGTTTGCTAGCTCATATCACTAACTGC
AAGTCCATGATTGAAGCGTTCGAAGCTGGTGGAGACTTTCATTCTCGAAC
TGCGTTGACCATGTTCGACAACGTAAAGGCGGCAGTCGCACGCGGGGATT
GTATCCTCGAACGAGAAGAAGGTGATGAGAACAGCAGTGATATACCTCTG
CTAAAGGATATGTTTCCCACTGAAAGAAGAAAAGCAAAGACATTGAACTT
TTCAATTGCGTATGGAAAGACAATTGTTGGCCTTGCGAGGGATTGGAATA
CAACTGAAGAGGAAGCAGCGGAAACACTGAACTTATGGTACAAAGAGCGT
CAGGAGGTACGAACGTGGCAGCGGCAGTGTAAGAAATTTCTCCAGCAACA
CCACTTTGTCGAAACAATGCTTGGCAGGAGGAGACGTCTACCAGACATAG
TGTCCGTAAAACCACATGAGCGATTCCACGCGCAACGAGCTGCAATTAAT
GCCCCGCTGCAGGGGTCTGCGGCGGATCTGGTTATGGGTGCGATGCTTAA
ACTGCATCGAGATCGAATTCTAAGAGCTTTGGGTTGGAAGATAATTCTTC
AAGTTCATGACGAAATTATTCTTGAAGGTCCGGAAGAATCAGCTGACATC
GCTCTGCCAATCGTAGTTAAGAAAATGAGGAACCCTTTGGATATTAATCT
TCGAGTTGAGTTGACTGTGGATGCAAAATGTGCAAAGTCTTGGTACGAAG
CAAAATGA
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