Ggra6711.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6711.t1
Unique NameGgra6711.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:264282..265181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX40251
Preferred nameESCO1
PFAMsAcetyltransf_13,zf-C2H2_3
Max annot lvl2759|Eukaryota
KEGG koko:K06674,ko:K11268
KEGG Pathwayko04111,map04111
GOsGO:0000003,GO:0000070,GO:0000228,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0000803,GO:0000819,GO:0001741,GO:0002244,GO:0002376,GO:0002520,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003824,GO:0004468,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005720,GO:0005721,GO:0005737,GO:0005794,GO:0006139,GO:0006259,GO:0006260,GO:0006275,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006325,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007076,GO:0007088,GO:0007135,GO:0007275,GO:0007346,GO:0007389,GO:0007507,GO:0008080,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009553,GO:0009611,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009893,GO:0009908,GO:0009956,GO:0009987,GO:0010154,GO:0010369,GO:0010556,GO:0010564,GO:0010604,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012505,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022622,GO:0030054,GO:0030097,GO:0030154,GO:0030162,GO:0030261,GO:0031099,GO:0031101,GO:0031323,GO:0031325,GO:0031326,GO:0031618,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0033036,GO:0033043,GO:0033365,GO:0033554,GO:0034085,GO:0034087,GO:0034089,GO:0034212,GO:0034421,GO:0034502,GO:0034613,GO:0034641,GO:0034645,GO:0035861,GO:0036211,GO:0040007,GO:0042060,GO:0042246,GO:0042802,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043280,GO:0043281,GO:0043412,GO:0043543,GO:0043596,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045144,GO:0045862,GO:0046483,GO:0046872,GO:0046914,GO:0048229,GO:0048285,GO:0048316,GO:0048364,GO:0048367,GO:0048437,GO:0048438,GO:0048443,GO:0048466,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048589,GO:0048608,GO:0048609,GO:0048653,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051128,GO:0051171,GO:0051173,GO:0051177,GO:0051179,GO:0051246,GO:0051247,GO:0051276,GO:0051321,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051726,GO:0051783,GO:0052547,GO:0052548,GO:0060255,GO:0060771,GO:0060772,GO:0061458,GO:0061733,GO:0061983,GO:0065007,GO:0065009,GO:0070013,GO:0070058,GO:0070192,GO:0070727,GO:0071103,GO:0071168,GO:0071704,GO:0071840,GO:0072359,GO:0080090,GO:0080186,GO:0090304,GO:0090567,GO:0090734,GO:0098687,GO:0098813,GO:0099402,GO:0140013,GO:0140014,GO:1901360,GO:1901564,GO:1901576,GO:1903046,GO:1903047,GO:1990523,GO:2000112,GO:2000116,GO:2001056
Evalue2.51e-17
EggNOG OGsKOG3014@1|root,KOG3014@2759|Eukaryota
Descriptionsister chromatid cohesion
COG categoryS
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6711Ggra6711Gracilaria gracilis GNS1m malegenetig00000056_pilon 264282..265181 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6711.t1.stop1Ggra6711.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 264282..264284 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6711.t1.CDS1Ggra6711.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 264282..265181 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6711.t1.exon1Ggra6711.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 264282..265181 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6711.t1.start1Ggra6711.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 265179..265181 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6711.t1Ggra6711.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 264282..265181 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6711.t1 ID=Ggra6711.t1|Name=Ggra6711.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=300bp
MPIVYSRKRLRAQNPDIEPASPEKTDTYAEPSRKPARPPAHQKPRKRRRL
QQLYIDAGQSTLSHTLCRHCNLLYAPGTSDEAFHRARHSKPADTFPWPLR
NATVLPETSVTDGIFVAITSNDCDDASLVRRLRRLDSFVCSQLANKDVSQ
RGLSIDNRLKLSLRRHDQHVWMVLIHVVDGLIRAFVHAERVHMASIASVC
DDGVTEILSLNENQVRRRYMCGIRKIWVHQNFRKKGIASALVDLARTHLL
YAGVVEKDNVAFTPPTTAGALFAKKYFKRSDNRILVYQLTDNGRPFDEL*
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spliced messenger RNA

>Ggra6711.t1 ID=Ggra6711.t1|Name=Ggra6711.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000056_pilon:264282..265181- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAATCGTCTACAGCCGAAAGCGTCTTCGTGCCCAAAATCCAGATAT
CGAGCCCGCATCCCCCGAAAAGACCGACACATACGCCGAGCCATCACGCA
AACCTGCCCGTCCACCAGCGCATCAAAAACCTCGCAAACGGCGCCGCCTT
CAACAGCTTTACATCGATGCTGGGCAGTCAACACTCTCACATACTCTGTG
TCGTCACTGCAACCTACTATACGCCCCCGGAACATCCGATGAGGCATTTC
ATCGCGCTCGTCACTCGAAGCCTGCTGATACGTTCCCATGGCCGCTGCGC
AACGCCACTGTCCTTCCCGAAACTTCGGTTACTGACGGAATTTTCGTGGC
GATAACAAGTAACGACTGTGACGATGCGAGTCTTGTGAGACGTCTTCGAC
GATTAGATTCGTTTGTTTGTTCCCAATTGGCAAACAAAGATGTCTCACAG
AGAGGTTTGTCAATCGATAACAGGCTCAAATTGTCCTTACGCCGCCACGA
CCAACATGTATGGATGGTTCTTATACATGTGGTAGATGGCTTGATTCGAG
CGTTTGTACATGCGGAAAGAGTGCACATGGCGAGTATTGCCAGCGTATGC
GATGACGGCGTTACAGAGATTCTGAGCTTGAATGAGAACCAGGTAAGGCG
CAGATATATGTGTGGAATAAGGAAGATATGGGTTCATCAAAACTTCCGAA
AGAAAGGAATTGCTTCAGCGCTGGTAGACCTTGCTAGGACGCACTTGTTA
TATGCGGGCGTTGTGGAGAAAGATAATGTCGCCTTCACACCACCAACAAC
GGCTGGAGCGCTGTTTGCGAAAAAGTACTTCAAGCGCTCAGATAATCGTA
TACTGGTATATCAACTAACTGACAACGGTCGTCCGTTTGATGAATTATAA
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protein sequence of Ggra6711.t1

>Ggra6711.t1 ID=Ggra6711.t1|Name=Ggra6711.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=300bp
MPIVYSRKRLRAQNPDIEPASPEKTDTYAEPSRKPARPPAHQKPRKRRRL
QQLYIDAGQSTLSHTLCRHCNLLYAPGTSDEAFHRARHSKPADTFPWPLR
NATVLPETSVTDGIFVAITSNDCDDASLVRRLRRLDSFVCSQLANKDVSQ
RGLSIDNRLKLSLRRHDQHVWMVLIHVVDGLIRAFVHAERVHMASIASVC
DDGVTEILSLNENQVRRRYMCGIRKIWVHQNFRKKGIASALVDLARTHLL
YAGVVEKDNVAFTPPTTAGALFAKKYFKRSDNRILVYQLTDNGRPFDEL*
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mRNA from alignment at tig00000056_pilon:264282..265181-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6711.t1 ID=Ggra6711.t1|Name=Ggra6711.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=900bp|location=Sequence derived from alignment at tig00000056_pilon:264282..265181- (Gracilaria gracilis GNS1m male)
ATGCCAATCGTCTACAGCCGAAAGCGTCTTCGTGCCCAAAATCCAGATAT
CGAGCCCGCATCCCCCGAAAAGACCGACACATACGCCGAGCCATCACGCA
AACCTGCCCGTCCACCAGCGCATCAAAAACCTCGCAAACGGCGCCGCCTT
CAACAGCTTTACATCGATGCTGGGCAGTCAACACTCTCACATACTCTGTG
TCGTCACTGCAACCTACTATACGCCCCCGGAACATCCGATGAGGCATTTC
ATCGCGCTCGTCACTCGAAGCCTGCTGATACGTTCCCATGGCCGCTGCGC
AACGCCACTGTCCTTCCCGAAACTTCGGTTACTGACGGAATTTTCGTGGC
GATAACAAGTAACGACTGTGACGATGCGAGTCTTGTGAGACGTCTTCGAC
GATTAGATTCGTTTGTTTGTTCCCAATTGGCAAACAAAGATGTCTCACAG
AGAGGTTTGTCAATCGATAACAGGCTCAAATTGTCCTTACGCCGCCACGA
CCAACATGTATGGATGGTTCTTATACATGTGGTAGATGGCTTGATTCGAG
CGTTTGTACATGCGGAAAGAGTGCACATGGCGAGTATTGCCAGCGTATGC
GATGACGGCGTTACAGAGATTCTGAGCTTGAATGAGAACCAGGTAAGGCG
CAGATATATGTGTGGAATAAGGAAGATATGGGTTCATCAAAACTTCCGAA
AGAAAGGAATTGCTTCAGCGCTGGTAGACCTTGCTAGGACGCACTTGTTA
TATGCGGGCGTTGTGGAGAAAGATAATGTCGCCTTCACACCACCAACAAC
GGCTGGAGCGCTGTTTGCGAAAAAGTACTTCAAGCGCTCAGATAATCGTA
TACTGGTATATCAACTAACTGACAACGGTCGTCCGTTTGATGAATTATAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:264282..265181-

>Ggra6711.t1 ID=Ggra6711.t1|Name=Ggra6711.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=900bp|location=Sequence derived from alignment at tig00000056_pilon:264282..265181- (Gracilaria gracilis GNS1m male)
ATGCCAATCGTCTACAGCCGAAAGCGTCTTCGTGCCCAAAATCCAGATAT
CGAGCCCGCATCCCCCGAAAAGACCGACACATACGCCGAGCCATCACGCA
AACCTGCCCGTCCACCAGCGCATCAAAAACCTCGCAAACGGCGCCGCCTT
CAACAGCTTTACATCGATGCTGGGCAGTCAACACTCTCACATACTCTGTG
TCGTCACTGCAACCTACTATACGCCCCCGGAACATCCGATGAGGCATTTC
ATCGCGCTCGTCACTCGAAGCCTGCTGATACGTTCCCATGGCCGCTGCGC
AACGCCACTGTCCTTCCCGAAACTTCGGTTACTGACGGAATTTTCGTGGC
GATAACAAGTAACGACTGTGACGATGCGAGTCTTGTGAGACGTCTTCGAC
GATTAGATTCGTTTGTTTGTTCCCAATTGGCAAACAAAGATGTCTCACAG
AGAGGTTTGTCAATCGATAACAGGCTCAAATTGTCCTTACGCCGCCACGA
CCAACATGTATGGATGGTTCTTATACATGTGGTAGATGGCTTGATTCGAG
CGTTTGTACATGCGGAAAGAGTGCACATGGCGAGTATTGCCAGCGTATGC
GATGACGGCGTTACAGAGATTCTGAGCTTGAATGAGAACCAGGTAAGGCG
CAGATATATGTGTGGAATAAGGAAGATATGGGTTCATCAAAACTTCCGAA
AGAAAGGAATTGCTTCAGCGCTGGTAGACCTTGCTAGGACGCACTTGTTA
TATGCGGGCGTTGTGGAGAAAGATAATGTCGCCTTCACACCACCAACAAC
GGCTGGAGCGCTGTTTGCGAAAAAGTACTTCAAGCGCTCAGATAATCGTA
TACTGGTATATCAACTAACTGACAACGGTCGTCCGTTTGATGAATTATAA
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