Ggra6707.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6707.t1
Unique NameGgra6707.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:251143..252638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S206_15V6.1
PFAMsMetallophos,PMD
Max annot lvl35493|Streptophyta
KEGG koko:K04460,ko:K15423
KEGG Pathwayko04010,ko04922,map04010,map04922
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009408,GO:0009416,GO:0009628,GO:0009637,GO:0009785,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0023052,GO:0030522,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071704,GO:0104004,GO:0140096,GO:1901564
Evalue7.37e-57
EggNOG OGsCOG0639@1|root,KOG0376@2759|Eukaryota,37KC8@33090|Viridiplantae,3GDZR@35493|Streptophyta
EC3.1.3.16
Descriptionserine threonine-protein phosphatase
COG categoryQ
BRITEko00000,ko00001,ko01000,ko01009,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6707Ggra6707Gracilaria gracilis GNS1m malegenetig00000056_pilon 251143..252638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6707.t1Ggra6707.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 251143..252638 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6707.t1.start1Ggra6707.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 251143..251145 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6707.t1.CDS1Ggra6707.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 251143..251654 +
Ggra6707.t1.CDS2Ggra6707.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 251728..252377 +
Ggra6707.t1.CDS3Ggra6707.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 252451..252638 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6707.t1.exon1Ggra6707.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 251143..251654 +
Ggra6707.t1.exon2Ggra6707.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 251728..252377 +
Ggra6707.t1.exon3Ggra6707.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 252451..252638 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6707.t1.intron1Ggra6707.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 251655..251727 +
Ggra6707.t1.intron2Ggra6707.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 252378..252450 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6707.t1.stop1Ggra6707.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 252636..252638 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6707.t1 ID=Ggra6707.t1|Name=Ggra6707.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp
MNFINPLLSTSDNAGVRGENLESVQPLPWPGIEKIDLEYVKALATRLLAA
TYRPPDLLNLFALRKPHLQKILLHAKERFSKELNIVDIVVPYSGKVHVFG
DTHGDFHSLMEAINIAGLPSADNIFVFAGDCVDRGCWGVEVVALIFALKL
CNPASTFLVRGNHETTGCTTRYGFQNEVNRKYDSKTFDVFCKAFRELPFA
AVLRSLPSETASCSTTVHPGAGRQRRKSSRGKRKESPLVDVAPTGQGWRS
YPIPGEKRILVVHGGLFRAWKANKRCIMTIGDLVDLAEVNRRYDDPYECL
LEDVIWSDPSAKNEVSCNALRGAGILYGTGAVQSFFKRNALNGMIRAHEG
PDVRERRTDMKRIDDGYSIDMDLAEGFVATVFTAADYPPDQPRGNKGAFA
TIHGKGTEKQQILPEFTSFAKRDSPSEMQLFYFQEQSEQSATPRTSFSN*
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spliced messenger RNA

>Ggra6707.t1 ID=Ggra6707.t1|Name=Ggra6707.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000056_pilon:251143..252638+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTTCATCAACCCTCTTCTATCTACATCGGATAATGCTGGGGTGCG
TGGTGAAAATCTTGAAAGCGTACAGCCTCTACCGTGGCCTGGTATCGAGA
AAATCGACCTAGAATATGTTAAAGCGCTTGCGACACGACTTCTCGCTGCT
ACCTATCGCCCACCAGACTTGCTTAACCTTTTTGCCTTGCGGAAACCCCA
CTTGCAAAAGATCCTGCTTCATGCGAAAGAACGCTTTTCTAAGGAACTTA
ACATTGTTGACATTGTTGTACCATACTCTGGAAAGGTTCACGTTTTTGGT
GACACTCATGGCGACTTTCATTCTTTGATGGAAGCGATCAATATCGCAGG
ACTACCATCGGCTGACAACATCTTCGTTTTCGCAGGGGATTGCGTGGACC
GCGGGTGCTGGGGTGTAGAAGTAGTAGCCCTCATTTTTGCTCTTAAGCTG
TGTAATCCCGCATCAACTTTTCTTGTACGCGGAAATCACGAAACTACCGG
TTGTACCACACGTTACGGATTTCAAAATGAGGTGAATCGAAAATATGATT
CAAAGACGTTCGACGTGTTCTGCAAGGCCTTTAGAGAGCTTCCTTTTGCA
GCCGTTCTGCGATCATTACCTTCTGAAACAGCATCCTGTTCAACAACAGT
TCACCCAGGTGCAGGGAGGCAGCGTCGAAAGTCATCGAGGGGTAAACGGA
AGGAATCCCCACTAGTAGATGTAGCCCCTACAGGACAAGGTTGGCGTTCA
TATCCGATTCCTGGGGAAAAGCGTATATTGGTCGTACATGGGGGACTATT
TCGCGCATGGAAGGCAAACAAACGTTGTATCATGACTATTGGGGATCTTG
TTGACCTCGCGGAAGTTAACCGCCGATATGATGACCCCTACGAATGTCTT
CTCGAGGATGTTATTTGGAGCGACCCTTCGGCAAAGAACGAAGTGTCATG
TAACGCACTACGAGGCGCTGGAATTTTATACGGCACAGGAGCAGTGCAAT
CATTCTTCAAACGCAATGCACTGAATGGAATGATTCGGGCGCATGAAGGC
CCTGATGTACGCGAGCGTCGAACCGACATGAAAAGAATTGATGACGGGTA
TTCGATAGATATGGACTTAGCTGAGGGCTTCGTTGCGACTGTTTTCACCG
CAGCCGACTATCCTCCTGATCAACCACGAGGAAATAAAGGAGCGTTTGCG
ACCATCCACGGAAAGGGAACTGAAAAGCAACAGATATTACCCGAGTTCAC
GTCTTTTGCAAAGCGCGACTCTCCTTCAGAGATGCAATTGTTTTACTTTC
AGGAGCAAAGCGAACAGTCAGCCACGCCGCGAACAAGCTTCTCAAACTAA
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protein sequence of Ggra6707.t1

>Ggra6707.t1 ID=Ggra6707.t1|Name=Ggra6707.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=450bp
MNFINPLLSTSDNAGVRGENLESVQPLPWPGIEKIDLEYVKALATRLLAA
TYRPPDLLNLFALRKPHLQKILLHAKERFSKELNIVDIVVPYSGKVHVFG
DTHGDFHSLMEAINIAGLPSADNIFVFAGDCVDRGCWGVEVVALIFALKL
CNPASTFLVRGNHETTGCTTRYGFQNEVNRKYDSKTFDVFCKAFRELPFA
AVLRSLPSETASCSTTVHPGAGRQRRKSSRGKRKESPLVDVAPTGQGWRS
YPIPGEKRILVVHGGLFRAWKANKRCIMTIGDLVDLAEVNRRYDDPYECL
LEDVIWSDPSAKNEVSCNALRGAGILYGTGAVQSFFKRNALNGMIRAHEG
PDVRERRTDMKRIDDGYSIDMDLAEGFVATVFTAADYPPDQPRGNKGAFA
TIHGKGTEKQQILPEFTSFAKRDSPSEMQLFYFQEQSEQSATPRTSFSN*
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mRNA from alignment at tig00000056_pilon:251143..252638+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6707.t1 ID=Ggra6707.t1|Name=Ggra6707.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1496bp|location=Sequence derived from alignment at tig00000056_pilon:251143..252638+ (Gracilaria gracilis GNS1m male)
ATGAACTTCATCAACCCTCTTCTATCTACATCGGATAATGCTGGGGTGCG
TGGTGAAAATCTTGAAAGCGTACAGCCTCTACCGTGGCCTGGTATCGAGA
AAATCGACCTAGAATATGTTAAAGCGCTTGCGACACGACTTCTCGCTGCT
ACCTATCGCCCACCAGACTTGCTTAACCTTTTTGCCTTGCGGAAACCCCA
CTTGCAAAAGATCCTGCTTCATGCGAAAGAACGCTTTTCTAAGGAACTTA
ACATTGTTGACATTGTTGTACCATACTCTGGAAAGGTTCACGTTTTTGGT
GACACTCATGGCGACTTTCATTCTTTGATGGAAGCGATCAATATCGCAGG
ACTACCATCGGCTGACAACATCTTCGTTTTCGCAGGGGATTGCGTGGACC
GCGGGTGCTGGGGTGTAGAAGTAGTAGCCCTCATTTTTGCTCTTAAGCTG
TGTAATCCCGCATCAACTTTTCTTGTACGCGGAAATCACGAAACTACCGG
TTGTACCACACGGTATGTGACTTAATCCTTTCCTTCTGCAGGTTTTGAGC
TCAACAAACAATTTTCATCTAACACCATGATCCAGTTACGGATTTCAAAA
TGAGGTGAATCGAAAATATGATTCAAAGACGTTCGACGTGTTCTGCAAGG
CCTTTAGAGAGCTTCCTTTTGCAGCCGTTCTGCGATCATTACCTTCTGAA
ACAGCATCCTGTTCAACAACAGTTCACCCAGGTGCAGGGAGGCAGCGTCG
AAAGTCATCGAGGGGTAAACGGAAGGAATCCCCACTAGTAGATGTAGCCC
CTACAGGACAAGGTTGGCGTTCATATCCGATTCCTGGGGAAAAGCGTATA
TTGGTCGTACATGGGGGACTATTTCGCGCATGGAAGGCAAACAAACGTTG
TATCATGACTATTGGGGATCTTGTTGACCTCGCGGAAGTTAACCGCCGAT
ATGATGACCCCTACGAATGTCTTCTCGAGGATGTTATTTGGAGCGACCCT
TCGGCAAAGAACGAAGTGTCATGTAACGCACTACGAGGCGCTGGAATTTT
ATACGGCACAGGAGCAGTGCAATCATTCTTCAAACGCAATGCACTGAATG
GAATGATTCGGGCGCATGAAGGCCCTGATGTACGCGAGCGTCGAACCGAC
ATGAAAAGAATTGATGACGGGTATTCGATAGATATGGACTTAGCTGAGGG
CTTCGTTGCGACTGTTTTCACCGCAGCCGACTATCGTAAGTTGACAAAAA
TCACAGTCTTCTCTAATAACAAACTCTAACACTTTTGTTGATCATTACCG
AATTGCAGCTCCTGATCAACCACGAGGAAATAAAGGAGCGTTTGCGACCA
TCCACGGAAAGGGAACTGAAAAGCAACAGATATTACCCGAGTTCACGTCT
TTTGCAAAGCGCGACTCTCCTTCAGAGATGCAATTGTTTTACTTTCAGGA
GCAAAGCGAACAGTCAGCCACGCCGCGAACAAGCTTCTCAAACTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:251143..252638+

>Ggra6707.t1 ID=Ggra6707.t1|Name=Ggra6707.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00000056_pilon:251143..252638+ (Gracilaria gracilis GNS1m male)
ATGAACTTCATCAACCCTCTTCTATCTACATCGGATAATGCTGGGGTGCG
TGGTGAAAATCTTGAAAGCGTACAGCCTCTACCGTGGCCTGGTATCGAGA
AAATCGACCTAGAATATGTTAAAGCGCTTGCGACACGACTTCTCGCTGCT
ACCTATCGCCCACCAGACTTGCTTAACCTTTTTGCCTTGCGGAAACCCCA
CTTGCAAAAGATCCTGCTTCATGCGAAAGAACGCTTTTCTAAGGAACTTA
ACATTGTTGACATTGTTGTACCATACTCTGGAAAGGTTCACGTTTTTGGT
GACACTCATGGCGACTTTCATTCTTTGATGGAAGCGATCAATATCGCAGG
ACTACCATCGGCTGACAACATCTTCGTTTTCGCAGGGGATTGCGTGGACC
GCGGGTGCTGGGGTGTAGAAGTAGTAGCCCTCATTTTTGCTCTTAAGCTG
TGTAATCCCGCATCAACTTTTCTTGTACGCGGAAATCACGAAACTACCGG
TTGTACCACACGTTACGGATTTCAAAATGAGGTGAATCGAAAATATGATT
CAAAGACGTTCGACGTGTTCTGCAAGGCCTTTAGAGAGCTTCCTTTTGCA
GCCGTTCTGCGATCATTACCTTCTGAAACAGCATCCTGTTCAACAACAGT
TCACCCAGGTGCAGGGAGGCAGCGTCGAAAGTCATCGAGGGGTAAACGGA
AGGAATCCCCACTAGTAGATGTAGCCCCTACAGGACAAGGTTGGCGTTCA
TATCCGATTCCTGGGGAAAAGCGTATATTGGTCGTACATGGGGGACTATT
TCGCGCATGGAAGGCAAACAAACGTTGTATCATGACTATTGGGGATCTTG
TTGACCTCGCGGAAGTTAACCGCCGATATGATGACCCCTACGAATGTCTT
CTCGAGGATGTTATTTGGAGCGACCCTTCGGCAAAGAACGAAGTGTCATG
TAACGCACTACGAGGCGCTGGAATTTTATACGGCACAGGAGCAGTGCAAT
CATTCTTCAAACGCAATGCACTGAATGGAATGATTCGGGCGCATGAAGGC
CCTGATGTACGCGAGCGTCGAACCGACATGAAAAGAATTGATGACGGGTA
TTCGATAGATATGGACTTAGCTGAGGGCTTCGTTGCGACTGTTTTCACCG
CAGCCGACTATCCTCCTGATCAACCACGAGGAAATAAAGGAGCGTTTGCG
ACCATCCACGGAAAGGGAACTGAAAAGCAACAGATATTACCCGAGTTCAC
GTCTTTTGCAAAGCGCGACTCTCCTTCAGAGATGCAATTGTTTTACTTTC
AGGAGCAAAGCGAACAGTCAGCCACGCCGCGAACAAGCTTCTCAAACTAA
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