Ggra6706.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6706.t1
Unique NameGgra6706.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length341
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:249483..250505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705067.1
Preferred nameCIA1
PFAMsWD40
Max annot lvl2759|Eukaryota
GOsGO:0000166,GO:0002097,GO:0002098,GO:0003674,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006790,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015630,GO:0016043,GO:0016070,GO:0016226,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0030554,GO:0031163,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042127,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044572,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051186,GO:0051252,GO:0051604,GO:0060255,GO:0065007,GO:0071704,GO:0071817,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097361,GO:0097367,GO:0097428,GO:0106035,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1903506,GO:2000112,GO:2001141
Evalue1.26e-52
EggNOG OGsKOG0645@1|root,KOG0645@2759|Eukaryota
Descriptioniron-sulfur cluster assembly
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6706Ggra6706Gracilaria gracilis GNS1m malegenetig00000056_pilon 249483..250505 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6706.t1.stop1Ggra6706.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 249483..249485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6706.t1.CDS1Ggra6706.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 249483..250505 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6706.t1.exon1Ggra6706.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 249483..250505 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6706.t1.start1Ggra6706.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 250503..250505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6706.t1Ggra6706.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 249483..250505 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6706.t1 ID=Ggra6706.t1|Name=Ggra6706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=341bp
MGRLRHLRTLRGHTGTVWSVTWSSSGLLASCGSDKTVRLWKIDTRSASFQ
LITVFENQTFLRTTRDLSFSPDGRSMAVASFDASATILELFGGKNPRFDP
VVVLEGHDSEVKSVAYSSSGGLLASCSRDRSIWLWEVGLDFDYSCIAVLH
GHAGDVKHVAWHPECELLVSCSYDETIRVWVEDEDDWFCSEILTGHAGTV
WAVAFEGAEMASASADESLIVWHRESTGDYPAFRVVARVENLHENGVLSV
DWKTLIATGGADDSICILQRNNGGIAEKSEKSGTTPSSLQGEWDIVARQP
RAHRGDVNRVAWSPIEDNILASCGDDGLVCLWLYEDDGSE*
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spliced messenger RNA

>Ggra6706.t1 ID=Ggra6706.t1|Name=Ggra6706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000056_pilon:249483..250505- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGCTTACGCCATTTAAGGACTCTGCGAGGGCACACAGGCACTGT
GTGGTCAGTGACGTGGTCATCTTCCGGTCTTCTTGCTTCATGCGGCAGTG
ATAAGACAGTTCGGCTCTGGAAGATAGACACACGAAGTGCCTCTTTCCAA
CTTATCACCGTATTTGAGAATCAAACTTTTCTACGAACTACCCGTGATTT
AAGCTTCTCTCCGGATGGACGTTCTATGGCTGTAGCAAGTTTCGATGCGT
CTGCAACGATTCTTGAACTATTTGGTGGTAAGAACCCGCGATTCGATCCC
GTCGTGGTTCTTGAAGGACATGACAGTGAGGTCAAAAGTGTGGCTTATAG
TTCTTCAGGAGGTTTGTTGGCAAGCTGTTCGCGGGATCGAAGCATATGGT
TATGGGAGGTAGGATTGGATTTTGATTACTCCTGTATCGCCGTGCTGCAT
GGACATGCAGGAGATGTGAAGCATGTCGCTTGGCATCCTGAGTGTGAACT
GCTTGTGTCATGTTCGTATGACGAAACCATACGTGTGTGGGTAGAGGACG
AAGATGATTGGTTTTGCAGTGAGATTCTCACTGGTCATGCTGGGACAGTA
TGGGCTGTTGCATTCGAAGGCGCAGAAATGGCTAGCGCATCTGCAGATGA
AAGTCTCATCGTGTGGCATAGAGAAAGCACTGGTGACTACCCTGCTTTTC
GCGTTGTTGCGCGAGTAGAGAACTTGCATGAAAACGGCGTTCTAAGCGTA
GATTGGAAGACACTCATTGCGACTGGTGGCGCCGACGATAGCATCTGCAT
ATTGCAACGAAATAATGGTGGTATCGCGGAAAAGAGTGAAAAAAGCGGAA
CTACACCCTCAAGTCTTCAAGGCGAGTGGGATATTGTGGCCCGGCAGCCC
CGCGCTCATCGCGGAGACGTAAATCGCGTGGCGTGGAGCCCAATAGAGGA
CAATATACTAGCGTCATGCGGTGATGATGGTCTGGTTTGCCTTTGGTTAT
ACGAGGATGATGGTAGTGAATGA
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protein sequence of Ggra6706.t1

>Ggra6706.t1 ID=Ggra6706.t1|Name=Ggra6706.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=341bp
MGRLRHLRTLRGHTGTVWSVTWSSSGLLASCGSDKTVRLWKIDTRSASFQ
LITVFENQTFLRTTRDLSFSPDGRSMAVASFDASATILELFGGKNPRFDP
VVVLEGHDSEVKSVAYSSSGGLLASCSRDRSIWLWEVGLDFDYSCIAVLH
GHAGDVKHVAWHPECELLVSCSYDETIRVWVEDEDDWFCSEILTGHAGTV
WAVAFEGAEMASASADESLIVWHRESTGDYPAFRVVARVENLHENGVLSV
DWKTLIATGGADDSICILQRNNGGIAEKSEKSGTTPSSLQGEWDIVARQP
RAHRGDVNRVAWSPIEDNILASCGDDGLVCLWLYEDDGSE*
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mRNA from alignment at tig00000056_pilon:249483..250505-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6706.t1 ID=Ggra6706.t1|Name=Ggra6706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1023bp|location=Sequence derived from alignment at tig00000056_pilon:249483..250505- (Gracilaria gracilis GNS1m male)
ATGGGTCGCTTACGCCATTTAAGGACTCTGCGAGGGCACACAGGCACTGT
GTGGTCAGTGACGTGGTCATCTTCCGGTCTTCTTGCTTCATGCGGCAGTG
ATAAGACAGTTCGGCTCTGGAAGATAGACACACGAAGTGCCTCTTTCCAA
CTTATCACCGTATTTGAGAATCAAACTTTTCTACGAACTACCCGTGATTT
AAGCTTCTCTCCGGATGGACGTTCTATGGCTGTAGCAAGTTTCGATGCGT
CTGCAACGATTCTTGAACTATTTGGTGGTAAGAACCCGCGATTCGATCCC
GTCGTGGTTCTTGAAGGACATGACAGTGAGGTCAAAAGTGTGGCTTATAG
TTCTTCAGGAGGTTTGTTGGCAAGCTGTTCGCGGGATCGAAGCATATGGT
TATGGGAGGTAGGATTGGATTTTGATTACTCCTGTATCGCCGTGCTGCAT
GGACATGCAGGAGATGTGAAGCATGTCGCTTGGCATCCTGAGTGTGAACT
GCTTGTGTCATGTTCGTATGACGAAACCATACGTGTGTGGGTAGAGGACG
AAGATGATTGGTTTTGCAGTGAGATTCTCACTGGTCATGCTGGGACAGTA
TGGGCTGTTGCATTCGAAGGCGCAGAAATGGCTAGCGCATCTGCAGATGA
AAGTCTCATCGTGTGGCATAGAGAAAGCACTGGTGACTACCCTGCTTTTC
GCGTTGTTGCGCGAGTAGAGAACTTGCATGAAAACGGCGTTCTAAGCGTA
GATTGGAAGACACTCATTGCGACTGGTGGCGCCGACGATAGCATCTGCAT
ATTGCAACGAAATAATGGTGGTATCGCGGAAAAGAGTGAAAAAAGCGGAA
CTACACCCTCAAGTCTTCAAGGCGAGTGGGATATTGTGGCCCGGCAGCCC
CGCGCTCATCGCGGAGACGTAAATCGCGTGGCGTGGAGCCCAATAGAGGA
CAATATACTAGCGTCATGCGGTGATGATGGTCTGGTTTGCCTTTGGTTAT
ACGAGGATGATGGTAGTGAATGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:249483..250505-

>Ggra6706.t1 ID=Ggra6706.t1|Name=Ggra6706.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1023bp|location=Sequence derived from alignment at tig00000056_pilon:249483..250505- (Gracilaria gracilis GNS1m male)
ATGGGTCGCTTACGCCATTTAAGGACTCTGCGAGGGCACACAGGCACTGT
GTGGTCAGTGACGTGGTCATCTTCCGGTCTTCTTGCTTCATGCGGCAGTG
ATAAGACAGTTCGGCTCTGGAAGATAGACACACGAAGTGCCTCTTTCCAA
CTTATCACCGTATTTGAGAATCAAACTTTTCTACGAACTACCCGTGATTT
AAGCTTCTCTCCGGATGGACGTTCTATGGCTGTAGCAAGTTTCGATGCGT
CTGCAACGATTCTTGAACTATTTGGTGGTAAGAACCCGCGATTCGATCCC
GTCGTGGTTCTTGAAGGACATGACAGTGAGGTCAAAAGTGTGGCTTATAG
TTCTTCAGGAGGTTTGTTGGCAAGCTGTTCGCGGGATCGAAGCATATGGT
TATGGGAGGTAGGATTGGATTTTGATTACTCCTGTATCGCCGTGCTGCAT
GGACATGCAGGAGATGTGAAGCATGTCGCTTGGCATCCTGAGTGTGAACT
GCTTGTGTCATGTTCGTATGACGAAACCATACGTGTGTGGGTAGAGGACG
AAGATGATTGGTTTTGCAGTGAGATTCTCACTGGTCATGCTGGGACAGTA
TGGGCTGTTGCATTCGAAGGCGCAGAAATGGCTAGCGCATCTGCAGATGA
AAGTCTCATCGTGTGGCATAGAGAAAGCACTGGTGACTACCCTGCTTTTC
GCGTTGTTGCGCGAGTAGAGAACTTGCATGAAAACGGCGTTCTAAGCGTA
GATTGGAAGACACTCATTGCGACTGGTGGCGCCGACGATAGCATCTGCAT
ATTGCAACGAAATAATGGTGGTATCGCGGAAAAGAGTGAAAAAAGCGGAA
CTACACCCTCAAGTCTTCAAGGCGAGTGGGATATTGTGGCCCGGCAGCCC
CGCGCTCATCGCGGAGACGTAAATCGCGTGGCGTGGAGCCCAATAGAGGA
CAATATACTAGCGTCATGCGGTGATGATGGTCTGGTTTGCCTTTGGTTAT
ACGAGGATGATGGTAGTGAATGA
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