Ggra6698.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6698.t1
Unique Name	Ggra6698.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	552

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:225615..227270 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704772.1
PFAMs	RabGAP-TBC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K20167
Evalue	1.1e-113
EggNOG OGs	COG5210@1\|root,KOG2223@2759\|Eukaryota
Description	recycling endosome to Golgi transport
COG category	L
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6698	Ggra6698	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 225615..227270 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6698.t1.start1	Ggra6698.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 225615..225617 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6698.t1.CDS1	Ggra6698.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 225615..227270 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6698.t1.exon1	Ggra6698.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 225615..227270 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6698.t1.stop1	Ggra6698.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 227268..227270 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6698.t1	Ggra6698.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 225615..227270 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:225615..227270+
coding sequence from alignment at tig00000056_pilon:225615..227270+

mRNA sequence

>Ggra6698.t1 ID=Ggra6698.t1|Name=Ggra6698.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=552bp
MDFTPSEHVPYDELSDSDSHHIADNYSVYTLSDNSPQETGTAYGRDSVPR
DLPEIALSLRAMNLGPSFDFSALPASPSASSDDQASAGSAAVSHDTFAAE
VDIDEDDETEESLYFHSSGRNSQLSSAEASLSTTESSSCDHLADSASSKR
RQTSSSAMLTSLKKRWKGVKKAGVKSTTNAGKSISSAFSRSDPNETPEDR
HGRLTDEWLNSILPSWRKKRQTARVRSLVFKGIPPTVRGRAWQCAIGNPL
SISEELFDVLKERASTGRRDFLRRREAVANADGDVGGIGGLAEPMLESER
SAHKAIMLDLPRTFPELSFFHAQGSHYEFALRDVLEAFLYLKPEVGYSQG
MSFLAAVLLLYMDPFEAFSCFCNMLLHKSCFLHFFRIKMPEVRFYLAVHD
KLLNEEMPALHSHFKTHGIDSDLYMINWIMSLYCRALPLDLVTRIWDIYV
LDGDVAIFRAALGLLRLFMSRLLKMKFEELAYFLSHIPGEEIDADALIHA
IRSVRIVSKKKFRDLFKECQSEHEKLCQGDEPGKPTKTRSHVRSTGYSKV
S*

spliced messenger RNA

>Ggra6698.t1 ID=Ggra6698.t1|Name=Ggra6698.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00000056_pilon:225615..227270+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTCACACCGTCAGAACATGTGCCTTATGACGAACTCTCGGATTC
TGACTCACACCACATAGCCGATAACTACTCTGTATATACACTATCTGACA
ACTCTCCGCAGGAAACGGGAACAGCTTATGGCAGAGACTCGGTTCCTCGT
GACCTTCCGGAAATTGCGCTGTCGCTCAGGGCAATGAACCTTGGTCCTTC
TTTCGACTTTTCTGCTTTACCTGCAAGCCCATCAGCTTCTTCGGATGACC
AAGCGAGTGCAGGCTCTGCTGCAGTATCACACGATACGTTTGCAGCTGAA
GTGGATATAGATGAAGATGACGAAACCGAAGAAAGTCTTTACTTCCATTC
TTCTGGGAGGAATTCGCAACTGTCAAGCGCTGAAGCCAGCTTATCGACAA
CTGAAAGTTCATCTTGTGATCATTTAGCAGATTCGGCGTCTTCGAAGCGT
CGTCAAACATCATCCAGTGCCATGCTAACATCTCTGAAAAAGCGATGGAA
AGGAGTGAAGAAAGCTGGTGTGAAATCAACAACGAACGCTGGCAAATCGA
TTTCATCCGCGTTCTCCCGAAGCGATCCAAACGAAACTCCAGAAGATAGA
CACGGGCGTTTAACTGATGAGTGGCTCAATTCCATACTTCCCTCTTGGCG
CAAGAAGCGTCAGACTGCTCGTGTGCGCTCCCTAGTTTTCAAAGGAATTC
CACCTACGGTGCGAGGTCGAGCATGGCAATGCGCTATTGGAAATCCGCTG
AGTATCTCCGAAGAACTTTTTGATGTCCTCAAAGAAAGAGCATCCACGGG
GCGAAGAGATTTTCTTCGTCGACGAGAAGCGGTTGCGAATGCAGACGGTG
ACGTAGGCGGCATAGGAGGTTTGGCAGAACCTATGTTGGAAAGTGAACGC
AGCGCACATAAAGCGATTATGCTGGATCTGCCACGAACGTTTCCTGAGCT
TAGTTTCTTTCATGCTCAAGGAAGCCATTATGAATTCGCTCTCCGTGATG
TTCTGGAAGCATTCCTATACCTCAAGCCAGAAGTCGGCTATAGTCAGGGA
ATGTCATTTCTGGCTGCAGTACTCTTGCTTTACATGGACCCCTTTGAGGC
ATTTTCCTGCTTCTGCAATATGCTGCTCCATAAGAGTTGTTTTCTACACT
TCTTCAGAATCAAGATGCCTGAAGTTCGTTTTTATCTCGCTGTCCACGAC
AAGCTGTTGAATGAGGAAATGCCAGCTCTTCATTCACATTTCAAGACTCA
TGGAATCGATTCTGATCTGTACATGATCAACTGGATCATGTCTCTATATT
GTCGTGCACTGCCTCTAGATCTCGTCACTCGAATATGGGATATATACGTC
CTTGATGGCGACGTAGCAATCTTTCGTGCCGCCTTAGGCCTTCTTCGTCT
CTTTATGTCTCGATTGCTCAAGATGAAGTTTGAAGAATTGGCCTACTTTC
TCAGTCATATTCCTGGCGAAGAAATTGATGCGGACGCCTTGATTCATGCT
ATTCGGTCAGTGCGCATTGTCAGCAAAAAGAAGTTCAGAGACCTATTCAA
GGAATGTCAATCTGAACACGAGAAGCTATGTCAAGGAGACGAACCAGGGA
AACCCACCAAAACTCGAAGCCACGTGCGATCAACAGGCTATTCTAAAGTA
TCATAG

protein sequence of Ggra6698.t1

>Ggra6698.t1 ID=Ggra6698.t1|Name=Ggra6698.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=552bp
MDFTPSEHVPYDELSDSDSHHIADNYSVYTLSDNSPQETGTAYGRDSVPR
DLPEIALSLRAMNLGPSFDFSALPASPSASSDDQASAGSAAVSHDTFAAE
VDIDEDDETEESLYFHSSGRNSQLSSAEASLSTTESSSCDHLADSASSKR
RQTSSSAMLTSLKKRWKGVKKAGVKSTTNAGKSISSAFSRSDPNETPEDR
HGRLTDEWLNSILPSWRKKRQTARVRSLVFKGIPPTVRGRAWQCAIGNPL
SISEELFDVLKERASTGRRDFLRRREAVANADGDVGGIGGLAEPMLESER
SAHKAIMLDLPRTFPELSFFHAQGSHYEFALRDVLEAFLYLKPEVGYSQG
MSFLAAVLLLYMDPFEAFSCFCNMLLHKSCFLHFFRIKMPEVRFYLAVHD
KLLNEEMPALHSHFKTHGIDSDLYMINWIMSLYCRALPLDLVTRIWDIYV
LDGDVAIFRAALGLLRLFMSRLLKMKFEELAYFLSHIPGEEIDADALIHA
IRSVRIVSKKKFRDLFKECQSEHEKLCQGDEPGKPTKTRSHVRSTGYSKV
S*

mRNA from alignment at tig00000056_pilon:225615..227270+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6698.t1 ID=Ggra6698.t1|Name=Ggra6698.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00000056_pilon:225615..227270+ (Gracilaria gracilis GNS1m male)
ATGGACTTCACACCGTCAGAACATGTGCCTTATGACGAACTCTCGGATTC
TGACTCACACCACATAGCCGATAACTACTCTGTATATACACTATCTGACA
ACTCTCCGCAGGAAACGGGAACAGCTTATGGCAGAGACTCGGTTCCTCGT
GACCTTCCGGAAATTGCGCTGTCGCTCAGGGCAATGAACCTTGGTCCTTC
TTTCGACTTTTCTGCTTTACCTGCAAGCCCATCAGCTTCTTCGGATGACC
AAGCGAGTGCAGGCTCTGCTGCAGTATCACACGATACGTTTGCAGCTGAA
GTGGATATAGATGAAGATGACGAAACCGAAGAAAGTCTTTACTTCCATTC
TTCTGGGAGGAATTCGCAACTGTCAAGCGCTGAAGCCAGCTTATCGACAA
CTGAAAGTTCATCTTGTGATCATTTAGCAGATTCGGCGTCTTCGAAGCGT
CGTCAAACATCATCCAGTGCCATGCTAACATCTCTGAAAAAGCGATGGAA
AGGAGTGAAGAAAGCTGGTGTGAAATCAACAACGAACGCTGGCAAATCGA
TTTCATCCGCGTTCTCCCGAAGCGATCCAAACGAAACTCCAGAAGATAGA
CACGGGCGTTTAACTGATGAGTGGCTCAATTCCATACTTCCCTCTTGGCG
CAAGAAGCGTCAGACTGCTCGTGTGCGCTCCCTAGTTTTCAAAGGAATTC
CACCTACGGTGCGAGGTCGAGCATGGCAATGCGCTATTGGAAATCCGCTG
AGTATCTCCGAAGAACTTTTTGATGTCCTCAAAGAAAGAGCATCCACGGG
GCGAAGAGATTTTCTTCGTCGACGAGAAGCGGTTGCGAATGCAGACGGTG
ACGTAGGCGGCATAGGAGGTTTGGCAGAACCTATGTTGGAAAGTGAACGC
AGCGCACATAAAGCGATTATGCTGGATCTGCCACGAACGTTTCCTGAGCT
TAGTTTCTTTCATGCTCAAGGAAGCCATTATGAATTCGCTCTCCGTGATG
TTCTGGAAGCATTCCTATACCTCAAGCCAGAAGTCGGCTATAGTCAGGGA
ATGTCATTTCTGGCTGCAGTACTCTTGCTTTACATGGACCCCTTTGAGGC
ATTTTCCTGCTTCTGCAATATGCTGCTCCATAAGAGTTGTTTTCTACACT
TCTTCAGAATCAAGATGCCTGAAGTTCGTTTTTATCTCGCTGTCCACGAC
AAGCTGTTGAATGAGGAAATGCCAGCTCTTCATTCACATTTCAAGACTCA
TGGAATCGATTCTGATCTGTACATGATCAACTGGATCATGTCTCTATATT
GTCGTGCACTGCCTCTAGATCTCGTCACTCGAATATGGGATATATACGTC
CTTGATGGCGACGTAGCAATCTTTCGTGCCGCCTTAGGCCTTCTTCGTCT
CTTTATGTCTCGATTGCTCAAGATGAAGTTTGAAGAATTGGCCTACTTTC
TCAGTCATATTCCTGGCGAAGAAATTGATGCGGACGCCTTGATTCATGCT
ATTCGGTCAGTGCGCATTGTCAGCAAAAAGAAGTTCAGAGACCTATTCAA
GGAATGTCAATCTGAACACGAGAAGCTATGTCAAGGAGACGAACCAGGGA
AACCCACCAAAACTCGAAGCCACGTGCGATCAACAGGCTATTCTAAAGTA
TCATAG

Coding sequence (CDS) from alignment at tig00000056_pilon:225615..227270+

>Ggra6698.t1 ID=Ggra6698.t1|Name=Ggra6698.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1656bp|location=Sequence derived from alignment at tig00000056_pilon:225615..227270+ (Gracilaria gracilis GNS1m male)
ATGGACTTCACACCGTCAGAACATGTGCCTTATGACGAACTCTCGGATTC
TGACTCACACCACATAGCCGATAACTACTCTGTATATACACTATCTGACA
ACTCTCCGCAGGAAACGGGAACAGCTTATGGCAGAGACTCGGTTCCTCGT
GACCTTCCGGAAATTGCGCTGTCGCTCAGGGCAATGAACCTTGGTCCTTC
TTTCGACTTTTCTGCTTTACCTGCAAGCCCATCAGCTTCTTCGGATGACC
AAGCGAGTGCAGGCTCTGCTGCAGTATCACACGATACGTTTGCAGCTGAA
GTGGATATAGATGAAGATGACGAAACCGAAGAAAGTCTTTACTTCCATTC
TTCTGGGAGGAATTCGCAACTGTCAAGCGCTGAAGCCAGCTTATCGACAA
CTGAAAGTTCATCTTGTGATCATTTAGCAGATTCGGCGTCTTCGAAGCGT
CGTCAAACATCATCCAGTGCCATGCTAACATCTCTGAAAAAGCGATGGAA
AGGAGTGAAGAAAGCTGGTGTGAAATCAACAACGAACGCTGGCAAATCGA
TTTCATCCGCGTTCTCCCGAAGCGATCCAAACGAAACTCCAGAAGATAGA
CACGGGCGTTTAACTGATGAGTGGCTCAATTCCATACTTCCCTCTTGGCG
CAAGAAGCGTCAGACTGCTCGTGTGCGCTCCCTAGTTTTCAAAGGAATTC
CACCTACGGTGCGAGGTCGAGCATGGCAATGCGCTATTGGAAATCCGCTG
AGTATCTCCGAAGAACTTTTTGATGTCCTCAAAGAAAGAGCATCCACGGG
GCGAAGAGATTTTCTTCGTCGACGAGAAGCGGTTGCGAATGCAGACGGTG
ACGTAGGCGGCATAGGAGGTTTGGCAGAACCTATGTTGGAAAGTGAACGC
AGCGCACATAAAGCGATTATGCTGGATCTGCCACGAACGTTTCCTGAGCT
TAGTTTCTTTCATGCTCAAGGAAGCCATTATGAATTCGCTCTCCGTGATG
TTCTGGAAGCATTCCTATACCTCAAGCCAGAAGTCGGCTATAGTCAGGGA
ATGTCATTTCTGGCTGCAGTACTCTTGCTTTACATGGACCCCTTTGAGGC
ATTTTCCTGCTTCTGCAATATGCTGCTCCATAAGAGTTGTTTTCTACACT
TCTTCAGAATCAAGATGCCTGAAGTTCGTTTTTATCTCGCTGTCCACGAC
AAGCTGTTGAATGAGGAAATGCCAGCTCTTCATTCACATTTCAAGACTCA
TGGAATCGATTCTGATCTGTACATGATCAACTGGATCATGTCTCTATATT
GTCGTGCACTGCCTCTAGATCTCGTCACTCGAATATGGGATATATACGTC
CTTGATGGCGACGTAGCAATCTTTCGTGCCGCCTTAGGCCTTCTTCGTCT
CTTTATGTCTCGATTGCTCAAGATGAAGTTTGAAGAATTGGCCTACTTTC
TCAGTCATATTCCTGGCGAAGAAATTGATGCGGACGCCTTGATTCATGCT
ATTCGGTCAGTGCGCATTGTCAGCAAAAAGAAGTTCAGAGACCTATTCAA
GGAATGTCAATCTGAACACGAGAAGCTATGTCAAGGAGACGAACCAGGGA
AACCCACCAAAACTCGAAGCCACGTGCGATCAACAGGCTATTCTAAAGTA
TCATAG