Ggra6694.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6694.t1
Unique Name	Ggra6694.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	366

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:216112..217209 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	161934.XP_010689647.1
PFAMs	DUF218
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0003824
Evalue	5.02e-77
EggNOG OGs	KOG4533@1\|root,KOG4533@2759\|Eukaryota,37MCN@33090\|Viridiplantae,3GGEX@35493\|Streptophyta
Description	intermembrane lipid transfer activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6694	Ggra6694	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 216112..217209 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6694.t1.start1	Ggra6694.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 216112..216114 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6694.t1.CDS1	Ggra6694.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 216112..217209 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6694.t1.exon1	Ggra6694.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 216112..217209 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6694.t1.stop1	Ggra6694.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 217207..217209 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6694.t1	Ggra6694.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 216112..217209 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:216112..217209+
coding sequence from alignment at tig00000056_pilon:216112..217209+

mRNA sequence

>Ggra6694.t1 ID=Ggra6694.t1|Name=Ggra6694.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp
MVTFARRADMAAASMQQRAVKSVLFSNDQYNSNKPRMQPAFRAVFSVRSI
AFLAFAVLILYCVFESPPAYLLRSAFGFLSTVSANTGVRNDIVLDAITEA
TAQNARPHYLRQLTTLIMVAGHAVYTGRQWDSASLNDENNWVLEPFQKGQ
VPTFLRHIQRGVQMAANDSTALLLFSGGQTRRNTGPRSEGLTYWMAADSL
AWFGQETSKVRNRTYAEEYARDSMENLLFSVCRFNQLTGRYPHVIKVVGF
EFKRYRFVDVHRRALRFPAHRFQYYGVDPENVDGIRGVTAGERARALGPF
SGDPYGCYSPILSSKRQGRNPYIRYHPYPQGCPELSALFRHCSRSLFSGP
LPWDPRIGTDEDRER*

spliced messenger RNA

>Ggra6694.t1 ID=Ggra6694.t1|Name=Ggra6694.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000056_pilon:216112..217209+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCACGTTCGCAAGGCGTGCTGATATGGCTGCTGCTTCGATGCAGCA
ACGTGCTGTCAAGTCTGTCCTGTTTTCAAATGACCAATACAATTCGAACA
AACCGAGGATGCAGCCGGCGTTTCGCGCTGTTTTCTCGGTGAGGTCGATT
GCTTTCTTGGCTTTTGCTGTGCTCATTCTATATTGTGTGTTCGAATCTCC
GCCTGCTTACTTGCTGCGTTCCGCCTTCGGCTTTCTCTCCACTGTGTCGG
CTAACACTGGCGTCCGCAATGATATTGTGCTCGACGCCATCACAGAGGCT
ACTGCTCAGAATGCACGTCCGCACTATTTGCGCCAGCTCACTACCTTGAT
CATGGTGGCCGGTCATGCAGTCTATACCGGCCGTCAGTGGGATTCAGCGT
CGCTTAACGATGAAAACAACTGGGTGCTCGAACCATTTCAAAAAGGTCAA
GTTCCGACATTCCTGAGACACATACAGCGTGGAGTCCAAATGGCTGCGAA
TGATTCTACCGCATTGCTTTTGTTTTCAGGCGGTCAGACACGTCGAAACA
CCGGTCCGCGAAGCGAAGGTCTGACGTACTGGATGGCGGCCGATTCATTG
GCGTGGTTTGGTCAGGAAACCAGCAAAGTACGCAATCGTACTTATGCGGA
AGAGTATGCACGAGACTCTATGGAGAACCTCTTGTTTTCTGTTTGCCGCT
TTAACCAGCTAACTGGTAGATATCCTCACGTCATTAAGGTTGTTGGCTTC
GAGTTTAAGCGATACCGTTTTGTTGACGTTCATCGAAGGGCACTCCGTTT
CCCAGCCCACCGTTTTCAATACTATGGAGTCGACCCCGAGAACGTTGATG
GAATACGTGGTGTGACTGCTGGGGAACGAGCAAGAGCCTTGGGTCCATTT
TCCGGAGATCCGTATGGCTGCTATTCGCCAATTCTTAGCTCAAAACGTCA
AGGCAGAAATCCATACATTCGATATCACCCGTACCCGCAAGGATGTCCAG
AGCTTTCTGCGCTATTCCGACATTGTAGTCGCTCTTTATTCAGCGGGCCG
CTACCGTGGGACCCTCGCATCGGAACGGACGAAGATCGAGAGCGTTAG

protein sequence of Ggra6694.t1

>Ggra6694.t1 ID=Ggra6694.t1|Name=Ggra6694.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MVTFARRADMAAASMQQRAVKSVLFSNDQYNSNKPRMQPAFRAVFSVRSI
AFLAFAVLILYCVFESPPAYLLRSAFGFLSTVSANTGVRNDIVLDAITEA
TAQNARPHYLRQLTTLIMVAGHAVYTGRQWDSASLNDENNWVLEPFQKGQ
VPTFLRHIQRGVQMAANDSTALLLFSGGQTRRNTGPRSEGLTYWMAADSL
AWFGQETSKVRNRTYAEEYARDSMENLLFSVCRFNQLTGRYPHVIKVVGF
EFKRYRFVDVHRRALRFPAHRFQYYGVDPENVDGIRGVTAGERARALGPF
SGDPYGCYSPILSSKRQGRNPYIRYHPYPQGCPELSALFRHCSRSLFSGP
LPWDPRIGTDEDRER*

mRNA from alignment at tig00000056_pilon:216112..217209+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6694.t1 ID=Ggra6694.t1|Name=Ggra6694.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000056_pilon:216112..217209+ (Gracilaria gracilis GNS1m male)
ATGGTCACGTTCGCAAGGCGTGCTGATATGGCTGCTGCTTCGATGCAGCA
ACGTGCTGTCAAGTCTGTCCTGTTTTCAAATGACCAATACAATTCGAACA
AACCGAGGATGCAGCCGGCGTTTCGCGCTGTTTTCTCGGTGAGGTCGATT
GCTTTCTTGGCTTTTGCTGTGCTCATTCTATATTGTGTGTTCGAATCTCC
GCCTGCTTACTTGCTGCGTTCCGCCTTCGGCTTTCTCTCCACTGTGTCGG
CTAACACTGGCGTCCGCAATGATATTGTGCTCGACGCCATCACAGAGGCT
ACTGCTCAGAATGCACGTCCGCACTATTTGCGCCAGCTCACTACCTTGAT
CATGGTGGCCGGTCATGCAGTCTATACCGGCCGTCAGTGGGATTCAGCGT
CGCTTAACGATGAAAACAACTGGGTGCTCGAACCATTTCAAAAAGGTCAA
GTTCCGACATTCCTGAGACACATACAGCGTGGAGTCCAAATGGCTGCGAA
TGATTCTACCGCATTGCTTTTGTTTTCAGGCGGTCAGACACGTCGAAACA
CCGGTCCGCGAAGCGAAGGTCTGACGTACTGGATGGCGGCCGATTCATTG
GCGTGGTTTGGTCAGGAAACCAGCAAAGTACGCAATCGTACTTATGCGGA
AGAGTATGCACGAGACTCTATGGAGAACCTCTTGTTTTCTGTTTGCCGCT
TTAACCAGCTAACTGGTAGATATCCTCACGTCATTAAGGTTGTTGGCTTC
GAGTTTAAGCGATACCGTTTTGTTGACGTTCATCGAAGGGCACTCCGTTT
CCCAGCCCACCGTTTTCAATACTATGGAGTCGACCCCGAGAACGTTGATG
GAATACGTGGTGTGACTGCTGGGGAACGAGCAAGAGCCTTGGGTCCATTT
TCCGGAGATCCGTATGGCTGCTATTCGCCAATTCTTAGCTCAAAACGTCA
AGGCAGAAATCCATACATTCGATATCACCCGTACCCGCAAGGATGTCCAG
AGCTTTCTGCGCTATTCCGACATTGTAGTCGCTCTTTATTCAGCGGGCCG
CTACCGTGGGACCCTCGCATCGGAACGGACGAAGATCGAGAGCGTTAG

Coding sequence (CDS) from alignment at tig00000056_pilon:216112..217209+

>Ggra6694.t1 ID=Ggra6694.t1|Name=Ggra6694.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00000056_pilon:216112..217209+ (Gracilaria gracilis GNS1m male)
ATGGTCACGTTCGCAAGGCGTGCTGATATGGCTGCTGCTTCGATGCAGCA
ACGTGCTGTCAAGTCTGTCCTGTTTTCAAATGACCAATACAATTCGAACA
AACCGAGGATGCAGCCGGCGTTTCGCGCTGTTTTCTCGGTGAGGTCGATT
GCTTTCTTGGCTTTTGCTGTGCTCATTCTATATTGTGTGTTCGAATCTCC
GCCTGCTTACTTGCTGCGTTCCGCCTTCGGCTTTCTCTCCACTGTGTCGG
CTAACACTGGCGTCCGCAATGATATTGTGCTCGACGCCATCACAGAGGCT
ACTGCTCAGAATGCACGTCCGCACTATTTGCGCCAGCTCACTACCTTGAT
CATGGTGGCCGGTCATGCAGTCTATACCGGCCGTCAGTGGGATTCAGCGT
CGCTTAACGATGAAAACAACTGGGTGCTCGAACCATTTCAAAAAGGTCAA
GTTCCGACATTCCTGAGACACATACAGCGTGGAGTCCAAATGGCTGCGAA
TGATTCTACCGCATTGCTTTTGTTTTCAGGCGGTCAGACACGTCGAAACA
CCGGTCCGCGAAGCGAAGGTCTGACGTACTGGATGGCGGCCGATTCATTG
GCGTGGTTTGGTCAGGAAACCAGCAAAGTACGCAATCGTACTTATGCGGA
AGAGTATGCACGAGACTCTATGGAGAACCTCTTGTTTTCTGTTTGCCGCT
TTAACCAGCTAACTGGTAGATATCCTCACGTCATTAAGGTTGTTGGCTTC
GAGTTTAAGCGATACCGTTTTGTTGACGTTCATCGAAGGGCACTCCGTTT
CCCAGCCCACCGTTTTCAATACTATGGAGTCGACCCCGAGAACGTTGATG
GAATACGTGGTGTGACTGCTGGGGAACGAGCAAGAGCCTTGGGTCCATTT
TCCGGAGATCCGTATGGCTGCTATTCGCCAATTCTTAGCTCAAAACGTCA
AGGCAGAAATCCATACATTCGATATCACCCGTACCCGCAAGGATGTCCAG
AGCTTTCTGCGCTATTCCGACATTGTAGTCGCTCTTTATTCAGCGGGCCG
CTACCGTGGGACCCTCGCATCGGAACGGACGAAGATCGAGAGCGTTAG