Ggra6690.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6690.t1
Unique Name	Ggra6690.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	555

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:200620..202284 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6690	Ggra6690	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 200620..202284 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6690.t1.stop1	Ggra6690.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 200620..200622 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6690.t1.CDS1	Ggra6690.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 200620..202284 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6690.t1.exon1	Ggra6690.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 200620..202284 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6690.t1.start1	Ggra6690.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 202282..202284 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6690.t1	Ggra6690.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 200620..202284 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:200620..202284-
coding sequence from alignment at tig00000056_pilon:200620..202284-

mRNA sequence

>Ggra6690.t1 ID=Ggra6690.t1|Name=Ggra6690.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=555bp
MEDAQLPADALPTQQQPVAADADAHPHAHQHVHQHVHQPAHFPAKPHSPS
EQHEHQPPDSNIDSPPQTQSQPVIQPTAQQPPSSNPSPAHQPDANPQSSV
RPIASEGLTHPEMATHQEPIVASTAMETNAQIITSSEMVDASSAAAHPLI
PSRAQIAAHTLNAATAAATAAAKEELPAFVATSTAYHHNPPDVLKQQHSQ
NASDPAYAEMGHIESAAILSNVMGDEAQSIITSAPQTHQRLVAQEPSGNV
LHTFQEAPNTASLSAPNAAHQSIQPAPENFHQQAQASVREEPHNATAPFV
TTQIQGQQHQMHMEATHAGQASEGYHQTVVQQHPPIARPTPEIHIPTRIT
NPVVSAALNGTLPKKPARMPGTKQCPTCHSTIAAALAKCVKCQHVFREKK
EKVKRSGKRGKKNCPKCNFENPSACSSCKKCKHIFRLKLIEKYKQMRPRA
NVQTSSSAMAVTAQTVTSSLGLPQMQSSNAPAVTTVPLPAGVASFPGSIT
PGMHAPHTVSVIPPFSQHQITIHPHTHNVHSTGVAQVHPIPQHPVQHHQP
HQQL*

spliced messenger RNA

>Ggra6690.t1 ID=Ggra6690.t1|Name=Ggra6690.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1665bp|location=Sequence derived from alignment at tig00000056_pilon:200620..202284- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACGCGCAACTCCCCGCCGACGCCTTGCCCACTCAGCAACAACC
GGTTGCAGCGGACGCCGACGCCCACCCCCACGCTCACCAACATGTTCACC
AACATGTTCACCAACCAGCTCACTTCCCTGCAAAGCCACACTCGCCATCT
GAGCAGCATGAACACCAACCTCCGGACAGCAATATTGACTCGCCCCCGCA
AACCCAGTCGCAGCCCGTCATCCAACCCACCGCTCAGCAACCGCCTTCAT
CGAACCCTTCTCCCGCCCACCAACCCGATGCAAACCCACAATCTTCCGTG
CGCCCCATCGCTTCGGAAGGACTCACTCACCCCGAAATGGCAACGCATCA
AGAGCCCATCGTGGCATCCACCGCGATGGAAACCAATGCTCAAATCATCA
CCTCCTCCGAGATGGTAGACGCATCGTCTGCTGCTGCACACCCGCTTATT
CCGTCCCGCGCCCAGATTGCCGCACACACCCTCAACGCCGCAACGGCAGC
CGCTACTGCAGCCGCCAAAGAAGAGCTTCCTGCATTTGTCGCTACCTCTA
CTGCGTATCACCACAACCCGCCGGACGTGCTCAAGCAACAGCACTCGCAG
AATGCATCCGATCCCGCTTATGCGGAAATGGGCCATATTGAATCTGCCGC
CATTCTGAGCAACGTTATGGGCGACGAAGCCCAAAGCATCATCACGTCCG
CTCCACAGACCCACCAACGACTTGTTGCGCAAGAACCATCTGGAAACGTG
TTGCACACTTTCCAAGAAGCTCCCAACACAGCCTCGCTCTCTGCACCTAA
CGCTGCGCACCAGTCAATTCAACCTGCTCCCGAAAACTTTCATCAACAAG
CACAGGCTTCTGTGCGAGAGGAGCCTCATAATGCCACAGCACCGTTCGTA
ACCACCCAGATCCAAGGCCAACAGCACCAAATGCATATGGAAGCGACCCA
CGCAGGACAAGCAAGCGAGGGTTACCACCAAACCGTTGTGCAGCAACACC
CGCCTATCGCACGCCCTACGCCCGAGATTCACATCCCAACGCGTATAACA
AATCCTGTTGTATCTGCAGCATTAAATGGTACGCTTCCCAAGAAGCCGGC
GAGAATGCCGGGCACCAAGCAGTGCCCGACATGTCACAGCACCATTGCAG
CTGCATTAGCGAAGTGTGTCAAGTGCCAACATGTATTTCGAGAGAAGAAG
GAGAAGGTGAAGAGATCCGGCAAGCGCGGTAAGAAAAACTGTCCCAAGTG
CAATTTCGAGAACCCTTCAGCATGCAGCTCTTGCAAAAAATGCAAGCATA
TATTCCGTTTGAAACTTATAGAGAAGTACAAGCAGATGCGACCTCGTGCT
AATGTTCAAACTTCGTCCAGTGCAATGGCTGTTACAGCGCAAACAGTTAC
GAGTTCTCTCGGTTTACCTCAGATGCAGAGTTCAAACGCTCCAGCCGTTA
CAACTGTTCCGCTGCCGGCAGGTGTGGCATCCTTCCCAGGGTCAATTACT
CCAGGGATGCATGCTCCTCATACTGTGTCTGTTATTCCTCCGTTCAGTCA
GCATCAGATAACTATACACCCTCACACGCACAATGTGCACTCAACCGGAG
TTGCGCAAGTACATCCAATTCCGCAACATCCTGTGCAACATCATCAGCCT
CATCAACAACTGTGA

protein sequence of Ggra6690.t1

>Ggra6690.t1 ID=Ggra6690.t1|Name=Ggra6690.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=555bp
MEDAQLPADALPTQQQPVAADADAHPHAHQHVHQHVHQPAHFPAKPHSPS
EQHEHQPPDSNIDSPPQTQSQPVIQPTAQQPPSSNPSPAHQPDANPQSSV
RPIASEGLTHPEMATHQEPIVASTAMETNAQIITSSEMVDASSAAAHPLI
PSRAQIAAHTLNAATAAATAAAKEELPAFVATSTAYHHNPPDVLKQQHSQ
NASDPAYAEMGHIESAAILSNVMGDEAQSIITSAPQTHQRLVAQEPSGNV
LHTFQEAPNTASLSAPNAAHQSIQPAPENFHQQAQASVREEPHNATAPFV
TTQIQGQQHQMHMEATHAGQASEGYHQTVVQQHPPIARPTPEIHIPTRIT
NPVVSAALNGTLPKKPARMPGTKQCPTCHSTIAAALAKCVKCQHVFREKK
EKVKRSGKRGKKNCPKCNFENPSACSSCKKCKHIFRLKLIEKYKQMRPRA
NVQTSSSAMAVTAQTVTSSLGLPQMQSSNAPAVTTVPLPAGVASFPGSIT
PGMHAPHTVSVIPPFSQHQITIHPHTHNVHSTGVAQVHPIPQHPVQHHQP
HQQL*

mRNA from alignment at tig00000056_pilon:200620..202284-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6690.t1 ID=Ggra6690.t1|Name=Ggra6690.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1665bp|location=Sequence derived from alignment at tig00000056_pilon:200620..202284- (Gracilaria gracilis GNS1m male)
ATGGAAGACGCGCAACTCCCCGCCGACGCCTTGCCCACTCAGCAACAACC
GGTTGCAGCGGACGCCGACGCCCACCCCCACGCTCACCAACATGTTCACC
AACATGTTCACCAACCAGCTCACTTCCCTGCAAAGCCACACTCGCCATCT
GAGCAGCATGAACACCAACCTCCGGACAGCAATATTGACTCGCCCCCGCA
AACCCAGTCGCAGCCCGTCATCCAACCCACCGCTCAGCAACCGCCTTCAT
CGAACCCTTCTCCCGCCCACCAACCCGATGCAAACCCACAATCTTCCGTG
CGCCCCATCGCTTCGGAAGGACTCACTCACCCCGAAATGGCAACGCATCA
AGAGCCCATCGTGGCATCCACCGCGATGGAAACCAATGCTCAAATCATCA
CCTCCTCCGAGATGGTAGACGCATCGTCTGCTGCTGCACACCCGCTTATT
CCGTCCCGCGCCCAGATTGCCGCACACACCCTCAACGCCGCAACGGCAGC
CGCTACTGCAGCCGCCAAAGAAGAGCTTCCTGCATTTGTCGCTACCTCTA
CTGCGTATCACCACAACCCGCCGGACGTGCTCAAGCAACAGCACTCGCAG
AATGCATCCGATCCCGCTTATGCGGAAATGGGCCATATTGAATCTGCCGC
CATTCTGAGCAACGTTATGGGCGACGAAGCCCAAAGCATCATCACGTCCG
CTCCACAGACCCACCAACGACTTGTTGCGCAAGAACCATCTGGAAACGTG
TTGCACACTTTCCAAGAAGCTCCCAACACAGCCTCGCTCTCTGCACCTAA
CGCTGCGCACCAGTCAATTCAACCTGCTCCCGAAAACTTTCATCAACAAG
CACAGGCTTCTGTGCGAGAGGAGCCTCATAATGCCACAGCACCGTTCGTA
ACCACCCAGATCCAAGGCCAACAGCACCAAATGCATATGGAAGCGACCCA
CGCAGGACAAGCAAGCGAGGGTTACCACCAAACCGTTGTGCAGCAACACC
CGCCTATCGCACGCCCTACGCCCGAGATTCACATCCCAACGCGTATAACA
AATCCTGTTGTATCTGCAGCATTAAATGGTACGCTTCCCAAGAAGCCGGC
GAGAATGCCGGGCACCAAGCAGTGCCCGACATGTCACAGCACCATTGCAG
CTGCATTAGCGAAGTGTGTCAAGTGCCAACATGTATTTCGAGAGAAGAAG
GAGAAGGTGAAGAGATCCGGCAAGCGCGGTAAGAAAAACTGTCCCAAGTG
CAATTTCGAGAACCCTTCAGCATGCAGCTCTTGCAAAAAATGCAAGCATA
TATTCCGTTTGAAACTTATAGAGAAGTACAAGCAGATGCGACCTCGTGCT
AATGTTCAAACTTCGTCCAGTGCAATGGCTGTTACAGCGCAAACAGTTAC
GAGTTCTCTCGGTTTACCTCAGATGCAGAGTTCAAACGCTCCAGCCGTTA
CAACTGTTCCGCTGCCGGCAGGTGTGGCATCCTTCCCAGGGTCAATTACT
CCAGGGATGCATGCTCCTCATACTGTGTCTGTTATTCCTCCGTTCAGTCA
GCATCAGATAACTATACACCCTCACACGCACAATGTGCACTCAACCGGAG
TTGCGCAAGTACATCCAATTCCGCAACATCCTGTGCAACATCATCAGCCT
CATCAACAACTGTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:200620..202284-

>Ggra6690.t1 ID=Ggra6690.t1|Name=Ggra6690.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1665bp|location=Sequence derived from alignment at tig00000056_pilon:200620..202284- (Gracilaria gracilis GNS1m male)
ATGGAAGACGCGCAACTCCCCGCCGACGCCTTGCCCACTCAGCAACAACC
GGTTGCAGCGGACGCCGACGCCCACCCCCACGCTCACCAACATGTTCACC
AACATGTTCACCAACCAGCTCACTTCCCTGCAAAGCCACACTCGCCATCT
GAGCAGCATGAACACCAACCTCCGGACAGCAATATTGACTCGCCCCCGCA
AACCCAGTCGCAGCCCGTCATCCAACCCACCGCTCAGCAACCGCCTTCAT
CGAACCCTTCTCCCGCCCACCAACCCGATGCAAACCCACAATCTTCCGTG
CGCCCCATCGCTTCGGAAGGACTCACTCACCCCGAAATGGCAACGCATCA
AGAGCCCATCGTGGCATCCACCGCGATGGAAACCAATGCTCAAATCATCA
CCTCCTCCGAGATGGTAGACGCATCGTCTGCTGCTGCACACCCGCTTATT
CCGTCCCGCGCCCAGATTGCCGCACACACCCTCAACGCCGCAACGGCAGC
CGCTACTGCAGCCGCCAAAGAAGAGCTTCCTGCATTTGTCGCTACCTCTA
CTGCGTATCACCACAACCCGCCGGACGTGCTCAAGCAACAGCACTCGCAG
AATGCATCCGATCCCGCTTATGCGGAAATGGGCCATATTGAATCTGCCGC
CATTCTGAGCAACGTTATGGGCGACGAAGCCCAAAGCATCATCACGTCCG
CTCCACAGACCCACCAACGACTTGTTGCGCAAGAACCATCTGGAAACGTG
TTGCACACTTTCCAAGAAGCTCCCAACACAGCCTCGCTCTCTGCACCTAA
CGCTGCGCACCAGTCAATTCAACCTGCTCCCGAAAACTTTCATCAACAAG
CACAGGCTTCTGTGCGAGAGGAGCCTCATAATGCCACAGCACCGTTCGTA
ACCACCCAGATCCAAGGCCAACAGCACCAAATGCATATGGAAGCGACCCA
CGCAGGACAAGCAAGCGAGGGTTACCACCAAACCGTTGTGCAGCAACACC
CGCCTATCGCACGCCCTACGCCCGAGATTCACATCCCAACGCGTATAACA
AATCCTGTTGTATCTGCAGCATTAAATGGTACGCTTCCCAAGAAGCCGGC
GAGAATGCCGGGCACCAAGCAGTGCCCGACATGTCACAGCACCATTGCAG
CTGCATTAGCGAAGTGTGTCAAGTGCCAACATGTATTTCGAGAGAAGAAG
GAGAAGGTGAAGAGATCCGGCAAGCGCGGTAAGAAAAACTGTCCCAAGTG
CAATTTCGAGAACCCTTCAGCATGCAGCTCTTGCAAAAAATGCAAGCATA
TATTCCGTTTGAAACTTATAGAGAAGTACAAGCAGATGCGACCTCGTGCT
AATGTTCAAACTTCGTCCAGTGCAATGGCTGTTACAGCGCAAACAGTTAC
GAGTTCTCTCGGTTTACCTCAGATGCAGAGTTCAAACGCTCCAGCCGTTA
CAACTGTTCCGCTGCCGGCAGGTGTGGCATCCTTCCCAGGGTCAATTACT
CCAGGGATGCATGCTCCTCATACTGTGTCTGTTATTCCTCCGTTCAGTCA
GCATCAGATAACTATACACCCTCACACGCACAATGTGCACTCAACCGGAG
TTGCGCAAGTACATCCAATTCCGCAACATCCTGTGCAACATCATCAGCCT
CATCAACAACTGTGA