Ggra6684.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6684.t1
Unique Name	Ggra6684.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	728

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:190747..192930 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703696.1
Preferred name	HSP81-3
PFAMs	HATPase_c,HSP90
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04079
KEGG Pathway	ko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map05200,map05215,map05418
GOs	GO:0002376,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006457,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0009266,GO:0009408,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009814,GO:0009816,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030312,GO:0031090,GO:0031974,GO:0031981,GO:0034622,GO:0042221,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0048046,GO:0050896,GO:0051131,GO:0051592,GO:0051704,GO:0051707,GO:0051716,GO:0061077,GO:0065003,GO:0070013,GO:0070887,GO:0071241,GO:0071248,GO:0071277,GO:0071840,GO:0071944,GO:0098542,GO:0098588,GO:0098805
Evalue	0.0
EggNOG OGs	COG0326@1\|root,KOG0019@2759\|Eukaryota
Description	unfolded protein binding
COG category	O
BRITE	ko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6684	Ggra6684	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 190747..192930 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6684.t1.start1	Ggra6684.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 190747..190749 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6684.t1.CDS1	Ggra6684.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 190747..192930 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6684.t1.exon1	Ggra6684.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 190747..192930 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6684.t1.stop1	Ggra6684.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 192928..192930 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6684.t1	Ggra6684.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 190747..192930 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:190747..192930+
coding sequence from alignment at tig00000056_pilon:190747..192930+

mRNA sequence

>Ggra6684.t1 ID=Ggra6684.t1|Name=Ggra6684.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=728bp
MADASAAAAAPAPEKETYEFQAEINQLMSLIINTVYSNKEIFLRELISNA
SDALNKVRYQSLSDKSILDTEAKMEIRIVPDKAAKTLTVQDTGIGMTKSD
LVNNLGMIANSGTKQYMEALAAGADVSMIGQFGVGFYSSYLVADNVVVHT
KSNDDEQYVWESSAGGSFTITKDTGSAITRGTWIVLHLKDDQLEYLEERR
LKDLVKKHSEFIQYPINLLVEKEVEKEVEGEDDEAPKEEEKKETDEQPKE
GDDTQVEDITEDADKDEEKKKKTIKVKEHEWQLLNKNKPIWTRKPEDVTK
EEYASFYKSITNDWEEHLSVKHFSLEGQLEFKAIIFVPKRAPFDLFEPRK
KLNNIKLYVKRVFIMDNCEDIIPEYLNFVKGVVDSEDLPLNLSREMLQQN
KILKVIRKTLVKKCMELFTELAENKEDYNTFYEQFSKNIKLGIHEDATNR
DKLAGLLRYNSTKCPDELTSLKEYVERMKDGQKNIYYITGESKKAVENSP
FLEKLKQKGFEVLFMVEPIDEYCVQQLKEFDGKKLVCASKEGMEMEESEE
EKKKREEEKKACEQLCTVIKEHLGDKVEKVVVSERLSDSPCILVTGEYGW
SANMERIMKAQALRDSSLSTYMSSRKTMEINPSNTIVKELRKRVDADKTE
KTVKDLVNLLFDTALLTSGFSLDEPNIFAARIHRMIKLGLSIDDDDEDEV
DATKTGDDEELPPLEEGAATSNMEEVD*

spliced messenger RNA

>Ggra6684.t1 ID=Ggra6684.t1|Name=Ggra6684.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2184bp|location=Sequence derived from alignment at tig00000056_pilon:190747..192930+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGACGCTAGTGCTGCCGCCGCTGCCCCGGCGCCCGAGAAGGAGAC
CTATGAGTTTCAGGCGGAGATTAACCAGTTGATGTCGCTCATCATCAATA
CCGTGTACTCCAACAAAGAGATCTTTCTTCGAGAGCTCATTTCCAATGCC
TCGGATGCCCTCAACAAGGTCCGCTACCAATCGCTCTCGGACAAGAGCAT
CCTCGACACCGAGGCTAAGATGGAGATCCGCATCGTTCCGGATAAGGCCG
CCAAGACTCTCACCGTGCAGGACACTGGCATCGGTATGACCAAGAGCGAC
CTCGTCAACAACCTCGGCATGATCGCCAACTCTGGCACCAAGCAGTACAT
GGAGGCGCTCGCTGCGGGCGCTGATGTCTCCATGATTGGCCAGTTTGGTG
TGGGTTTCTACTCCAGTTATCTCGTTGCTGATAACGTCGTTGTGCACACC
AAGAGCAATGACGATGAGCAATACGTGTGGGAGAGTTCTGCTGGTGGATC
CTTCACTATCACCAAGGACACTGGTAGTGCTATCACTAGGGGTACCTGGA
TTGTCCTGCATCTCAAAGATGACCAGCTCGAGTACCTCGAGGAACGTCGC
CTCAAGGACCTTGTCAAGAAGCACTCCGAGTTCATCCAGTACCCCATCAA
CCTGCTGGTCGAGAAGGAAGTCGAGAAGGAGGTCGAAGGTGAGGACGACG
AGGCTCCCAAGGAGGAAGAAAAGAAGGAAACTGACGAGCAGCCCAAGGAA
GGTGACGACACCCAGGTCGAGGACATCACCGAAGACGCGGACAAGGATGA
GGAGAAGAAAAAGAAGACCATCAAGGTCAAGGAGCACGAGTGGCAGCTTC
TCAACAAGAACAAGCCCATCTGGACCCGGAAGCCGGAGGACGTCACCAAG
GAGGAGTATGCCTCCTTCTACAAGAGCATCACCAACGATTGGGAGGAGCA
TCTTTCCGTCAAGCACTTCTCACTCGAAGGTCAGCTCGAGTTCAAGGCCA
TCATCTTCGTGCCTAAGCGCGCTCCCTTCGACTTGTTCGAGCCGAGGAAG
AAGCTTAACAACATCAAGCTGTATGTGAAGCGTGTGTTTATCATGGACAA
CTGTGAGGATATCATTCCGGAATACCTCAACTTTGTCAAGGGTGTCGTCG
ATTCAGAGGATCTCCCGCTCAACCTCAGCCGTGAAATGCTCCAGCAGAAC
AAAATCTTGAAGGTTATTCGCAAGACCTTGGTCAAGAAGTGCATGGAGCT
CTTCACCGAGCTGGCTGAGAACAAGGAGGACTACAACACCTTCTACGAGC
AGTTCTCCAAGAACATCAAGCTCGGTATCCATGAGGACGCTACCAACAGA
GACAAGCTCGCTGGTCTTCTGAGATACAACTCTACCAAGTGCCCCGATGA
GCTTACTAGCCTTAAGGAGTACGTCGAGCGTATGAAGGATGGCCAGAAGA
ACATCTACTACATCACCGGTGAGAGCAAGAAGGCTGTCGAGAACTCACCG
TTCTTGGAGAAGCTCAAACAGAAGGGGTTCGAGGTGTTGTTCATGGTTGA
GCCCATCGACGAGTACTGTGTGCAACAGTTGAAGGAGTTCGATGGCAAGA
AGCTTGTGTGCGCTTCTAAGGAAGGCATGGAGATGgaagaatctgaagag
gaaaagaagaagcgtgaagaggagaaaaagGCCTGCGAGCAATTGTGCAC
TGTCATCAAGGAGCATCTTGGCGACAAGGTGGAGAAGGTCGTAGTGTCAG
AGCGGTTGTCTGACTCTCCTTGCATCCTTGTGACTGGTGAGTACGGTTGG
TCTGCTAACATGGAACGCATCATGAAAGCGCAGGCATTGCGTGACTCGTC
ACTGTCGACCTACATGAGCTCCAGAAAGACGATGGAGATCAACCCGTCCA
ACACGATTGTCAAGGAATTGCGGAAGCGTGTGGACGCGGACAAGACTGAG
AAGACGGTGAAGGACCTCGTTAATTTGCTTTTCGATACTGCGTTGTTGAC
TTCTGGCTTCTCGCTTGATGAGCCCAACATATTTGCAGCTAGAATTCATC
GTATGATCAAGCTTGGGCTCAGCATtgatgacgatgatgaggatgaagtg
gacgctacgaagaccggtgatgatgaggaGTTGCCGCCTCTGGAGGAAGG
CGCTGCCACCTCAAACATGGAGGAAGTGGATTAA

protein sequence of Ggra6684.t1

>Ggra6684.t1 ID=Ggra6684.t1|Name=Ggra6684.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=728bp
MADASAAAAAPAPEKETYEFQAEINQLMSLIINTVYSNKEIFLRELISNA
SDALNKVRYQSLSDKSILDTEAKMEIRIVPDKAAKTLTVQDTGIGMTKSD
LVNNLGMIANSGTKQYMEALAAGADVSMIGQFGVGFYSSYLVADNVVVHT
KSNDDEQYVWESSAGGSFTITKDTGSAITRGTWIVLHLKDDQLEYLEERR
LKDLVKKHSEFIQYPINLLVEKEVEKEVEGEDDEAPKEEEKKETDEQPKE
GDDTQVEDITEDADKDEEKKKKTIKVKEHEWQLLNKNKPIWTRKPEDVTK
EEYASFYKSITNDWEEHLSVKHFSLEGQLEFKAIIFVPKRAPFDLFEPRK
KLNNIKLYVKRVFIMDNCEDIIPEYLNFVKGVVDSEDLPLNLSREMLQQN
KILKVIRKTLVKKCMELFTELAENKEDYNTFYEQFSKNIKLGIHEDATNR
DKLAGLLRYNSTKCPDELTSLKEYVERMKDGQKNIYYITGESKKAVENSP
FLEKLKQKGFEVLFMVEPIDEYCVQQLKEFDGKKLVCASKEGMEMEESEE
EKKKREEEKKACEQLCTVIKEHLGDKVEKVVVSERLSDSPCILVTGEYGW
SANMERIMKAQALRDSSLSTYMSSRKTMEINPSNTIVKELRKRVDADKTE
KTVKDLVNLLFDTALLTSGFSLDEPNIFAARIHRMIKLGLSIDDDDEDEV
DATKTGDDEELPPLEEGAATSNMEEVD*

mRNA from alignment at tig00000056_pilon:190747..192930+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6684.t1 ID=Ggra6684.t1|Name=Ggra6684.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2184bp|location=Sequence derived from alignment at tig00000056_pilon:190747..192930+ (Gracilaria gracilis GNS1m male)
ATGGCCGACGCTAGTGCTGCCGCCGCTGCCCCGGCGCCCGAGAAGGAGAC
CTATGAGTTTCAGGCGGAGATTAACCAGTTGATGTCGCTCATCATCAATA
CCGTGTACTCCAACAAAGAGATCTTTCTTCGAGAGCTCATTTCCAATGCC
TCGGATGCCCTCAACAAGGTCCGCTACCAATCGCTCTCGGACAAGAGCAT
CCTCGACACCGAGGCTAAGATGGAGATCCGCATCGTTCCGGATAAGGCCG
CCAAGACTCTCACCGTGCAGGACACTGGCATCGGTATGACCAAGAGCGAC
CTCGTCAACAACCTCGGCATGATCGCCAACTCTGGCACCAAGCAGTACAT
GGAGGCGCTCGCTGCGGGCGCTGATGTCTCCATGATTGGCCAGTTTGGTG
TGGGTTTCTACTCCAGTTATCTCGTTGCTGATAACGTCGTTGTGCACACC
AAGAGCAATGACGATGAGCAATACGTGTGGGAGAGTTCTGCTGGTGGATC
CTTCACTATCACCAAGGACACTGGTAGTGCTATCACTAGGGGTACCTGGA
TTGTCCTGCATCTCAAAGATGACCAGCTCGAGTACCTCGAGGAACGTCGC
CTCAAGGACCTTGTCAAGAAGCACTCCGAGTTCATCCAGTACCCCATCAA
CCTGCTGGTCGAGAAGGAAGTCGAGAAGGAGGTCGAAGGTGAGGACGACG
AGGCTCCCAAGGAGGAAGAAAAGAAGGAAACTGACGAGCAGCCCAAGGAA
GGTGACGACACCCAGGTCGAGGACATCACCGAAGACGCGGACAAGGATGA
GGAGAAGAAAAAGAAGACCATCAAGGTCAAGGAGCACGAGTGGCAGCTTC
TCAACAAGAACAAGCCCATCTGGACCCGGAAGCCGGAGGACGTCACCAAG
GAGGAGTATGCCTCCTTCTACAAGAGCATCACCAACGATTGGGAGGAGCA
TCTTTCCGTCAAGCACTTCTCACTCGAAGGTCAGCTCGAGTTCAAGGCCA
TCATCTTCGTGCCTAAGCGCGCTCCCTTCGACTTGTTCGAGCCGAGGAAG
AAGCTTAACAACATCAAGCTGTATGTGAAGCGTGTGTTTATCATGGACAA
CTGTGAGGATATCATTCCGGAATACCTCAACTTTGTCAAGGGTGTCGTCG
ATTCAGAGGATCTCCCGCTCAACCTCAGCCGTGAAATGCTCCAGCAGAAC
AAAATCTTGAAGGTTATTCGCAAGACCTTGGTCAAGAAGTGCATGGAGCT
CTTCACCGAGCTGGCTGAGAACAAGGAGGACTACAACACCTTCTACGAGC
AGTTCTCCAAGAACATCAAGCTCGGTATCCATGAGGACGCTACCAACAGA
GACAAGCTCGCTGGTCTTCTGAGATACAACTCTACCAAGTGCCCCGATGA
GCTTACTAGCCTTAAGGAGTACGTCGAGCGTATGAAGGATGGCCAGAAGA
ACATCTACTACATCACCGGTGAGAGCAAGAAGGCTGTCGAGAACTCACCG
TTCTTGGAGAAGCTCAAACAGAAGGGGTTCGAGGTGTTGTTCATGGTTGA
GCCCATCGACGAGTACTGTGTGCAACAGTTGAAGGAGTTCGATGGCAAGA
AGCTTGTGTGCGCTTCTAAGGAAGGCATGGAGATGgaagaatctgaagag
gaaaagaagaagcgtgaagaggagaaaaagGCCTGCGAGCAATTGTGCAC
TGTCATCAAGGAGCATCTTGGCGACAAGGTGGAGAAGGTCGTAGTGTCAG
AGCGGTTGTCTGACTCTCCTTGCATCCTTGTGACTGGTGAGTACGGTTGG
TCTGCTAACATGGAACGCATCATGAAAGCGCAGGCATTGCGTGACTCGTC
ACTGTCGACCTACATGAGCTCCAGAAAGACGATGGAGATCAACCCGTCCA
ACACGATTGTCAAGGAATTGCGGAAGCGTGTGGACGCGGACAAGACTGAG
AAGACGGTGAAGGACCTCGTTAATTTGCTTTTCGATACTGCGTTGTTGAC
TTCTGGCTTCTCGCTTGATGAGCCCAACATATTTGCAGCTAGAATTCATC
GTATGATCAAGCTTGGGCTCAGCATtgatgacgatgatgaggatgaagtg
gacgctacgaagaccggtgatgatgaggaGTTGCCGCCTCTGGAGGAAGG
CGCTGCCACCTCAAACATGGAGGAAGTGGATTAA

Coding sequence (CDS) from alignment at tig00000056_pilon:190747..192930+

>Ggra6684.t1 ID=Ggra6684.t1|Name=Ggra6684.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2184bp|location=Sequence derived from alignment at tig00000056_pilon:190747..192930+ (Gracilaria gracilis GNS1m male)
ATGGCCGACGCTAGTGCTGCCGCCGCTGCCCCGGCGCCCGAGAAGGAGAC
CTATGAGTTTCAGGCGGAGATTAACCAGTTGATGTCGCTCATCATCAATA
CCGTGTACTCCAACAAAGAGATCTTTCTTCGAGAGCTCATTTCCAATGCC
TCGGATGCCCTCAACAAGGTCCGCTACCAATCGCTCTCGGACAAGAGCAT
CCTCGACACCGAGGCTAAGATGGAGATCCGCATCGTTCCGGATAAGGCCG
CCAAGACTCTCACCGTGCAGGACACTGGCATCGGTATGACCAAGAGCGAC
CTCGTCAACAACCTCGGCATGATCGCCAACTCTGGCACCAAGCAGTACAT
GGAGGCGCTCGCTGCGGGCGCTGATGTCTCCATGATTGGCCAGTTTGGTG
TGGGTTTCTACTCCAGTTATCTCGTTGCTGATAACGTCGTTGTGCACACC
AAGAGCAATGACGATGAGCAATACGTGTGGGAGAGTTCTGCTGGTGGATC
CTTCACTATCACCAAGGACACTGGTAGTGCTATCACTAGGGGTACCTGGA
TTGTCCTGCATCTCAAAGATGACCAGCTCGAGTACCTCGAGGAACGTCGC
CTCAAGGACCTTGTCAAGAAGCACTCCGAGTTCATCCAGTACCCCATCAA
CCTGCTGGTCGAGAAGGAAGTCGAGAAGGAGGTCGAAGGTGAGGACGACG
AGGCTCCCAAGGAGGAAGAAAAGAAGGAAACTGACGAGCAGCCCAAGGAA
GGTGACGACACCCAGGTCGAGGACATCACCGAAGACGCGGACAAGGATGA
GGAGAAGAAAAAGAAGACCATCAAGGTCAAGGAGCACGAGTGGCAGCTTC
TCAACAAGAACAAGCCCATCTGGACCCGGAAGCCGGAGGACGTCACCAAG
GAGGAGTATGCCTCCTTCTACAAGAGCATCACCAACGATTGGGAGGAGCA
TCTTTCCGTCAAGCACTTCTCACTCGAAGGTCAGCTCGAGTTCAAGGCCA
TCATCTTCGTGCCTAAGCGCGCTCCCTTCGACTTGTTCGAGCCGAGGAAG
AAGCTTAACAACATCAAGCTGTATGTGAAGCGTGTGTTTATCATGGACAA
CTGTGAGGATATCATTCCGGAATACCTCAACTTTGTCAAGGGTGTCGTCG
ATTCAGAGGATCTCCCGCTCAACCTCAGCCGTGAAATGCTCCAGCAGAAC
AAAATCTTGAAGGTTATTCGCAAGACCTTGGTCAAGAAGTGCATGGAGCT
CTTCACCGAGCTGGCTGAGAACAAGGAGGACTACAACACCTTCTACGAGC
AGTTCTCCAAGAACATCAAGCTCGGTATCCATGAGGACGCTACCAACAGA
GACAAGCTCGCTGGTCTTCTGAGATACAACTCTACCAAGTGCCCCGATGA
GCTTACTAGCCTTAAGGAGTACGTCGAGCGTATGAAGGATGGCCAGAAGA
ACATCTACTACATCACCGGTGAGAGCAAGAAGGCTGTCGAGAACTCACCG
TTCTTGGAGAAGCTCAAACAGAAGGGGTTCGAGGTGTTGTTCATGGTTGA
GCCCATCGACGAGTACTGTGTGCAACAGTTGAAGGAGTTCGATGGCAAGA
AGCTTGTGTGCGCTTCTAAGGAAGGCATGGAGATGgaagaatctgaagag
gaaaagaagaagcgtgaagaggagaaaaagGCCTGCGAGCAATTGTGCAC
TGTCATCAAGGAGCATCTTGGCGACAAGGTGGAGAAGGTCGTAGTGTCAG
AGCGGTTGTCTGACTCTCCTTGCATCCTTGTGACTGGTGAGTACGGTTGG
TCTGCTAACATGGAACGCATCATGAAAGCGCAGGCATTGCGTGACTCGTC
ACTGTCGACCTACATGAGCTCCAGAAAGACGATGGAGATCAACCCGTCCA
ACACGATTGTCAAGGAATTGCGGAAGCGTGTGGACGCGGACAAGACTGAG
AAGACGGTGAAGGACCTCGTTAATTTGCTTTTCGATACTGCGTTGTTGAC
TTCTGGCTTCTCGCTTGATGAGCCCAACATATTTGCAGCTAGAATTCATC
GTATGATCAAGCTTGGGCTCAGCATtgatgacgatgatgaggatgaagtg
gacgctacgaagaccggtgatgatgaggaGTTGCCGCCTCTGGAGGAAGG
CGCTGCCACCTCAAACATGGAGGAAGTGGATTAA