Ggra6682.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6682.t1
Unique Name	Ggra6682.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	493

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:184059..185537 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6682	Ggra6682	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 184059..185537 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6682.t1.start1	Ggra6682.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 184059..184061 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6682.t1.CDS1	Ggra6682.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 184059..185537 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6682.t1.exon1	Ggra6682.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 184059..185537 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6682.t1.stop1	Ggra6682.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 185535..185537 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6682.t1	Ggra6682.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 184059..185537 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:184059..185537+
coding sequence from alignment at tig00000056_pilon:184059..185537+

mRNA sequence

>Ggra6682.t1 ID=Ggra6682.t1|Name=Ggra6682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=493bp
MANSTVSQALEHNYCYQPGVSETWDEWEVRGFYEYLFNDGLNLNLDENWV
SVITALTTSLSIIFFLDIMYRVVVRAKTGRVTKQMVLRRHYMDVFSNPIC
LFLTLIGGLQKRKRPSGDVTSEQITRPKRSIKKNCVHVCIALLGISTVLI
ELLFIFLATNQNRVHNVRLENVPTFEFEDRGCDRLDPPVFNGCSNQGPVT
EKNGFSSRASLQICDTFILVPSPADGIEVGPGQAVLIITALSGGRVDLWI
RETNLTYISIMRLELALDNGRFYRGNHTITDEQIVSAVTQRLMRTNATII
TTAPSVRSNNSNLDQRMHRVLSTASGDVRSQHTVLARSSGPVTALIWVNV
TNIDLKHPKALFGYHLEDPRIQNYLFGVMRSVIFPTGKGRGSVRIQDRTK
YLDEDTTPIVYYNRPWIGVVPSVIICGTLTIVWTVLVVLGIQDGVDARWA
WKELFSDTYRVDDIGNGTDELKYLTWRCDSFGDQSFGFTPRI*

spliced messenger RNA

>Ggra6682.t1 ID=Ggra6682.t1|Name=Ggra6682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000056_pilon:184059..185537+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAACTCAACAGTTTCTCAAGCTTTGGAACACAACTATTGTTATCA
GCCTGGAGTGAGTGAAACATGGGACGAGTGGGAGGTGCGTGGTTTTTACG
AATATCTATTCAACGATGGGTTGAATCTGAACCTTGATGAAAATTGGGTA
TCGGTTATCACTGCCCTCACAACGTCGCTTTCTATCATTTTCTTCTTGGA
TATCATGTATCGAGTGGTTGTTCGAGCCAAAACAGGTCGGGTAACGAAAC
AGATGGTTCTGAGGCGACACTACATGGACGTTTTCAGTAATCCTATATGT
CTTTTCCTAACACTCATTGGAGGACTTCAGAAGAGGAAAAGGCCATCAGG
TGACGTCACTTCTGAACAAATCACAAGGCCAAAAAGATCTATCAAGAAAA
ATTGTGTGCATGTGTGCATAGCTTTGTTAGGAATTTCTACCGTTCTCATT
GAGTTGTTGTTCATCTTCTTGGCCACCAACCAGAATCGTGTACACAACGT
GCGCCTTGAAAATGTTCCTACATTTGAATTTGAGGATAGAGGTTGTGACA
GGCTTGACCCCCCTGTTTTCAACGGCTGCTCCAATCAAGGACCGGTGACT
GAGAAAAATGGCTTCAGTTCAAGAGCCAGCTTACAAATATGTGATACATT
CATTTTGGTACCGTCCCCAGCAGATGGAATTGAGGTCGGTCCTGGTCAGG
CTGTACTTATCATTACGGCCTTAAGTGGAGGGCGCGTTGATCTCTGGATA
AGGGAAACGAATCTAACGTACATTTCAATCATGAGACTGGAACTAGCGCT
TGATAATGGCAGGTTCTATAGAGGCAATCACACCATCACGGATGAACAGA
TAGTTTCCGCTGTGACACAACGACTGATGAGAACAAATGCTACAATTATT
ACTACCGCACCTTCAGTTCGTTCAAATAACTCAAACCTTGACCAAAGGAT
GCATCGAGTTTTGTCAACTGCGTCTGGAGATGTACGATCTCAACATACAG
TTCTTGCAAGATCTTCTGGGCCTGTGACTGCGTTGATTTGGGTTAATGTG
ACTAACATTGATCTAAAACATCCCAAGGCGCTTTTTGGGTACCATCTCGA
GGATCCGCGGATACAAAACTATTTGTTTGGTGTAATGCGCTCGGTAATAT
TTCCCACTGGGAAAGGGCGTGGGAGTGTGCGGATTCAAGACAGAACAAAG
TATTTAGATGAGGATACCACACCAATAGTGTACTACAACAGGCCGTGGAT
TGGTGTCGTGCCTAGCGTGATCATTTGTGGTACGCTTACAATTGTTTGGA
CTGTGCTTGTGGTTCTAGGTATACAAGATGGTGTGGACGCGCGATGGGCA
TGGAAAGAGTTGTTCTCAGACACATACAGGGTTGATGACATTGGAAACGG
AACAGACGAGTTAAAATATTTGACATGGAGATGTGATAGCTTTGGGGATC
AAAGCTTTGGGTTCACTCCAAGAATTTAG

protein sequence of Ggra6682.t1

>Ggra6682.t1 ID=Ggra6682.t1|Name=Ggra6682.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=493bp
MANSTVSQALEHNYCYQPGVSETWDEWEVRGFYEYLFNDGLNLNLDENWV
SVITALTTSLSIIFFLDIMYRVVVRAKTGRVTKQMVLRRHYMDVFSNPIC
LFLTLIGGLQKRKRPSGDVTSEQITRPKRSIKKNCVHVCIALLGISTVLI
ELLFIFLATNQNRVHNVRLENVPTFEFEDRGCDRLDPPVFNGCSNQGPVT
EKNGFSSRASLQICDTFILVPSPADGIEVGPGQAVLIITALSGGRVDLWI
RETNLTYISIMRLELALDNGRFYRGNHTITDEQIVSAVTQRLMRTNATII
TTAPSVRSNNSNLDQRMHRVLSTASGDVRSQHTVLARSSGPVTALIWVNV
TNIDLKHPKALFGYHLEDPRIQNYLFGVMRSVIFPTGKGRGSVRIQDRTK
YLDEDTTPIVYYNRPWIGVVPSVIICGTLTIVWTVLVVLGIQDGVDARWA
WKELFSDTYRVDDIGNGTDELKYLTWRCDSFGDQSFGFTPRI*

mRNA from alignment at tig00000056_pilon:184059..185537+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6682.t1 ID=Ggra6682.t1|Name=Ggra6682.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1479bp|location=Sequence derived from alignment at tig00000056_pilon:184059..185537+ (Gracilaria gracilis GNS1m male)
ATGGCCAACTCAACAGTTTCTCAAGCTTTGGAACACAACTATTGTTATCA
GCCTGGAGTGAGTGAAACATGGGACGAGTGGGAGGTGCGTGGTTTTTACG
AATATCTATTCAACGATGGGTTGAATCTGAACCTTGATGAAAATTGGGTA
TCGGTTATCACTGCCCTCACAACGTCGCTTTCTATCATTTTCTTCTTGGA
TATCATGTATCGAGTGGTTGTTCGAGCCAAAACAGGTCGGGTAACGAAAC
AGATGGTTCTGAGGCGACACTACATGGACGTTTTCAGTAATCCTATATGT
CTTTTCCTAACACTCATTGGAGGACTTCAGAAGAGGAAAAGGCCATCAGG
TGACGTCACTTCTGAACAAATCACAAGGCCAAAAAGATCTATCAAGAAAA
ATTGTGTGCATGTGTGCATAGCTTTGTTAGGAATTTCTACCGTTCTCATT
GAGTTGTTGTTCATCTTCTTGGCCACCAACCAGAATCGTGTACACAACGT
GCGCCTTGAAAATGTTCCTACATTTGAATTTGAGGATAGAGGTTGTGACA
GGCTTGACCCCCCTGTTTTCAACGGCTGCTCCAATCAAGGACCGGTGACT
GAGAAAAATGGCTTCAGTTCAAGAGCCAGCTTACAAATATGTGATACATT
CATTTTGGTACCGTCCCCAGCAGATGGAATTGAGGTCGGTCCTGGTCAGG
CTGTACTTATCATTACGGCCTTAAGTGGAGGGCGCGTTGATCTCTGGATA
AGGGAAACGAATCTAACGTACATTTCAATCATGAGACTGGAACTAGCGCT
TGATAATGGCAGGTTCTATAGAGGCAATCACACCATCACGGATGAACAGA
TAGTTTCCGCTGTGACACAACGACTGATGAGAACAAATGCTACAATTATT
ACTACCGCACCTTCAGTTCGTTCAAATAACTCAAACCTTGACCAAAGGAT
GCATCGAGTTTTGTCAACTGCGTCTGGAGATGTACGATCTCAACATACAG
TTCTTGCAAGATCTTCTGGGCCTGTGACTGCGTTGATTTGGGTTAATGTG
ACTAACATTGATCTAAAACATCCCAAGGCGCTTTTTGGGTACCATCTCGA
GGATCCGCGGATACAAAACTATTTGTTTGGTGTAATGCGCTCGGTAATAT
TTCCCACTGGGAAAGGGCGTGGGAGTGTGCGGATTCAAGACAGAACAAAG
TATTTAGATGAGGATACCACACCAATAGTGTACTACAACAGGCCGTGGAT
TGGTGTCGTGCCTAGCGTGATCATTTGTGGTACGCTTACAATTGTTTGGA
CTGTGCTTGTGGTTCTAGGTATACAAGATGGTGTGGACGCGCGATGGGCA
TGGAAAGAGTTGTTCTCAGACACATACAGGGTTGATGACATTGGAAACGG
AACAGACGAGTTAAAATATTTGACATGGAGATGTGATAGCTTTGGGGATC
AAAGCTTTGGGTTCACTCCAAGAATTTAG

Coding sequence (CDS) from alignment at tig00000056_pilon:184059..185537+

>Ggra6682.t1 ID=Ggra6682.t1|Name=Ggra6682.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1479bp|location=Sequence derived from alignment at tig00000056_pilon:184059..185537+ (Gracilaria gracilis GNS1m male)
ATGGCCAACTCAACAGTTTCTCAAGCTTTGGAACACAACTATTGTTATCA
GCCTGGAGTGAGTGAAACATGGGACGAGTGGGAGGTGCGTGGTTTTTACG
AATATCTATTCAACGATGGGTTGAATCTGAACCTTGATGAAAATTGGGTA
TCGGTTATCACTGCCCTCACAACGTCGCTTTCTATCATTTTCTTCTTGGA
TATCATGTATCGAGTGGTTGTTCGAGCCAAAACAGGTCGGGTAACGAAAC
AGATGGTTCTGAGGCGACACTACATGGACGTTTTCAGTAATCCTATATGT
CTTTTCCTAACACTCATTGGAGGACTTCAGAAGAGGAAAAGGCCATCAGG
TGACGTCACTTCTGAACAAATCACAAGGCCAAAAAGATCTATCAAGAAAA
ATTGTGTGCATGTGTGCATAGCTTTGTTAGGAATTTCTACCGTTCTCATT
GAGTTGTTGTTCATCTTCTTGGCCACCAACCAGAATCGTGTACACAACGT
GCGCCTTGAAAATGTTCCTACATTTGAATTTGAGGATAGAGGTTGTGACA
GGCTTGACCCCCCTGTTTTCAACGGCTGCTCCAATCAAGGACCGGTGACT
GAGAAAAATGGCTTCAGTTCAAGAGCCAGCTTACAAATATGTGATACATT
CATTTTGGTACCGTCCCCAGCAGATGGAATTGAGGTCGGTCCTGGTCAGG
CTGTACTTATCATTACGGCCTTAAGTGGAGGGCGCGTTGATCTCTGGATA
AGGGAAACGAATCTAACGTACATTTCAATCATGAGACTGGAACTAGCGCT
TGATAATGGCAGGTTCTATAGAGGCAATCACACCATCACGGATGAACAGA
TAGTTTCCGCTGTGACACAACGACTGATGAGAACAAATGCTACAATTATT
ACTACCGCACCTTCAGTTCGTTCAAATAACTCAAACCTTGACCAAAGGAT
GCATCGAGTTTTGTCAACTGCGTCTGGAGATGTACGATCTCAACATACAG
TTCTTGCAAGATCTTCTGGGCCTGTGACTGCGTTGATTTGGGTTAATGTG
ACTAACATTGATCTAAAACATCCCAAGGCGCTTTTTGGGTACCATCTCGA
GGATCCGCGGATACAAAACTATTTGTTTGGTGTAATGCGCTCGGTAATAT
TTCCCACTGGGAAAGGGCGTGGGAGTGTGCGGATTCAAGACAGAACAAAG
TATTTAGATGAGGATACCACACCAATAGTGTACTACAACAGGCCGTGGAT
TGGTGTCGTGCCTAGCGTGATCATTTGTGGTACGCTTACAATTGTTTGGA
CTGTGCTTGTGGTTCTAGGTATACAAGATGGTGTGGACGCGCGATGGGCA
TGGAAAGAGTTGTTCTCAGACACATACAGGGTTGATGACATTGGAAACGG
AACAGACGAGTTAAAATATTTGACATGGAGATGTGATAGCTTTGGGGATC
AAAGCTTTGGGTTCACTCCAAGAATTTAG