Ggra6680.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6680.t1
Unique NameGgra6680.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length290
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:172167..173111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMQ201CT
Preferred nameIMPA2
PFAMsInositol_P
Max annot lvl2759|Eukaryota
KEGG rclassRC00078
KEGG koko:K01092,ko:K10047,ko:K13104
KEGG ReactionR01185,R01186,R01187,R07674
KEGG Pathwayko00053,ko00521,ko00562,ko01100,ko01110,ko04070,map00053,map00521,map00562,map01100,map01110,map04070
KEGG ModuleM00114,M00131
GOsGO:0000287,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0005975,GO:0005996,GO:0006020,GO:0006021,GO:0006066,GO:0006082,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006732,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006935,GO:0006950,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008934,GO:0009056,GO:0009058,GO:0009108,GO:0009110,GO:0009266,GO:0009409,GO:0009605,GO:0009628,GO:0009987,GO:0010035,GO:0010038,GO:0010226,GO:0010347,GO:0016020,GO:0016051,GO:0016053,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019203,GO:0019637,GO:0019751,GO:0019752,GO:0019852,GO:0019853,GO:0023052,GO:0030145,GO:0030424,GO:0031403,GO:0031420,GO:0033036,GO:0034637,GO:0035418,GO:0036477,GO:0040011,GO:0042221,GO:0042330,GO:0042364,GO:0042578,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043025,GO:0043052,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043647,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044262,GO:0044281,GO:0044282,GO:0044283,GO:0044297,GO:0044424,GO:0044444,GO:0044464,GO:0045017,GO:0046164,GO:0046165,GO:0046173,GO:0046174,GO:0046364,GO:0046394,GO:0046434,GO:0046474,GO:0046486,GO:0046488,GO:0046838,GO:0046855,GO:0046872,GO:0046914,GO:0046983,GO:0050308,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051188,GO:0051716,GO:0052745,GO:0052832,GO:0052833,GO:0052834,GO:0065007,GO:0070456,GO:0071545,GO:0071704,GO:0071944,GO:0080167,GO:0090407,GO:0097458,GO:0120025,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617
Evalue7.92e-58
EggNOG OGsCOG0483@1|root,KOG2951@2759|Eukaryota
EC3.1.3.25,3.1.3.93
DescriptionInositol-1-monophosphatase
COG categoryG
BiGG ReactioniRC1080.CRv4_Au5_s13_g5028_t1
BRITEko00000,ko00001,ko00002,ko01000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6680Ggra6680Gracilaria gracilis GNS1m malegenetig00000056_pilon 172167..173111 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6680.t1Ggra6680.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 172167..173111 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6680.t1.stop1Ggra6680.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 172167..172169 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6680.t1.CDS1Ggra6680.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 172167..172699 -
Ggra6680.t1.CDS2Ggra6680.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 172775..173111 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6680.t1.exon1Ggra6680.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 172167..172699 -
Ggra6680.t1.exon2Ggra6680.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 172775..173111 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6680.t1.intron1Ggra6680.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 172700..172774 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6680.t1.start1Ggra6680.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 173109..173111 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6680.t1 ID=Ggra6680.t1|Name=Ggra6680.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=290bp
MSATQQQQQQQQQQVDVSASGTQQLLSFAVALAKQGGALIEAAFREERND
HYARKSPTDPVTDTDHAVEALILGAIRARFPQHKLIGEESASEVQWSAAP
TWIVDPLDGTANFVHRIPLCAVSIAFTYEKQLIVGVVYNPLQKELYSATH
LTRSQLNGRAIGVSRVSSLRSACVATEAGSERSAHKTEWVLAKLGAVLRH
DAQCVRMLGSCALNMAAVASGRVDVLYERGPRAWDVAAGALLVRQAGGVV
LSGHLFAAAADFDLTARSVLAFTPSLRAELLRTHKLQPP*
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spliced messenger RNA

>Ggra6680.t1 ID=Ggra6680.t1|Name=Ggra6680.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=870bp|location=Sequence derived from alignment at tig00000056_pilon:172167..173111- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGACGCAACAACAACAACAACAACAACAACAACAAGTGGACGT
GTCGGCGAGCGGCACGCAGCAGCTGCTGTCGTTCGCGGTGGCGCTAGCAA
AGCAGGGCGGCGCGCTGATCGAGGCGGCGTTCCGCGAGGAGCGCAACGAC
CACTACGCACGCAAGTCGCCTACAGACCCCGTGACGGACACGGACCACGC
GGTAGAGGCGCTGATCCTGGGCGCGATCCGCGCGCGTTTCCCGCAGCACA
AGCTGATCGGCGAGGAGAGCGCGAGCGAGGTGCAATGGAGCGCCGCGCCG
ACGTGGATCGTGGACCCGCTTGACGGCACCGCCAACTTCGTGCACCGCAT
CCCGCTGTGCGCGGTGAGCATCGCGTTCACGTACGAGAAGCAGCTCATCG
TGGGGGTGGTATACAACCCGCTGCAGAAGGAGCTGTACAGCGCGACGCAT
CTGACGCGCTCGCAGCTGAACGGGCGCGCCATCGGCGTATCGCGCGTGTC
GTCGCTGCGCTCCGCGTGCGTGGCGACGGAGGCCGGGTCAGAGCGCAGCG
CGCACAAGACGGAGTGGGTGCTGGCCAAGCTCGGGGCGGTGCTGCGCCAC
GACGCGCAGTGCGTGCGCATGCTGGGCTCGTGCGCGCTCAACATGGCGGC
CGTGGCGAGCGGGCGCGTGGACGTGCTGTACGAGCGCGGGCCGCGTGCGT
GGGACGTAGCGGCCGGCGCGCTGCTCGTCCGCCAGGCGGGCGGCGTCGTG
CTGAGCGGCCACTTGTTCGCCGCCGCCGCCGACTTTGACCTCACCGCGCG
CAGCGTGTTGGCGTTCACGCCCTCGCTGCGTGCCGAGCTGCTCCGCACGC
ACAAGCTGCAACCCCCGTAA
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protein sequence of Ggra6680.t1

>Ggra6680.t1 ID=Ggra6680.t1|Name=Ggra6680.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=290bp
MSATQQQQQQQQQQVDVSASGTQQLLSFAVALAKQGGALIEAAFREERND
HYARKSPTDPVTDTDHAVEALILGAIRARFPQHKLIGEESASEVQWSAAP
TWIVDPLDGTANFVHRIPLCAVSIAFTYEKQLIVGVVYNPLQKELYSATH
LTRSQLNGRAIGVSRVSSLRSACVATEAGSERSAHKTEWVLAKLGAVLRH
DAQCVRMLGSCALNMAAVASGRVDVLYERGPRAWDVAAGALLVRQAGGVV
LSGHLFAAAADFDLTARSVLAFTPSLRAELLRTHKLQPP*
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mRNA from alignment at tig00000056_pilon:172167..173111-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6680.t1 ID=Ggra6680.t1|Name=Ggra6680.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=945bp|location=Sequence derived from alignment at tig00000056_pilon:172167..173111- (Gracilaria gracilis GNS1m male)
ATGAGCGCGACGCAACAACAACAACAACAACAACAACAACAAGTGGACGT
GTCGGCGAGCGGCACGCAGCAGCTGCTGTCGTTCGCGGTGGCGCTAGCAA
AGCAGGGCGGCGCGCTGATCGAGGCGGCGTTCCGCGAGGAGCGCAACGAC
CACTACGCACGCAAGTCGCCTACAGACCCCGTGACGGACACGGACCACGC
GGTAGAGGCGCTGATCCTGGGCGCGATCCGCGCGCGTTTCCCGCAGCACA
AGCTGATCGGCGAGGAGAGCGCGAGCGAGGTGCAATGGAGCGCCGCGCCG
ACGTGGATCGTGGACCCGCTTGACGGCACCGCCAACTGTAAGTGCGCTAC
TACTCTTTCTCATAAGTTGCTGTGCTTGTTCTGACGAGGGCGTGGTTGTG
TTGGCGGCGCAGTCGTGCACCGCATCCCGCTGTGCGCGGTGAGCATCGCG
TTCACGTACGAGAAGCAGCTCATCGTGGGGGTGGTATACAACCCGCTGCA
GAAGGAGCTGTACAGCGCGACGCATCTGACGCGCTCGCAGCTGAACGGGC
GCGCCATCGGCGTATCGCGCGTGTCGTCGCTGCGCTCCGCGTGCGTGGCG
ACGGAGGCCGGGTCAGAGCGCAGCGCGCACAAGACGGAGTGGGTGCTGGC
CAAGCTCGGGGCGGTGCTGCGCCACGACGCGCAGTGCGTGCGCATGCTGG
GCTCGTGCGCGCTCAACATGGCGGCCGTGGCGAGCGGGCGCGTGGACGTG
CTGTACGAGCGCGGGCCGCGTGCGTGGGACGTAGCGGCCGGCGCGCTGCT
CGTCCGCCAGGCGGGCGGCGTCGTGCTGAGCGGCCACTTGTTCGCCGCCG
CCGCCGACTTTGACCTCACCGCGCGCAGCGTGTTGGCGTTCACGCCCTCG
CTGCGTGCCGAGCTGCTCCGCACGCACAAGCTGCAACCCCCGTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:172167..173111-

>Ggra6680.t1 ID=Ggra6680.t1|Name=Ggra6680.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=870bp|location=Sequence derived from alignment at tig00000056_pilon:172167..173111- (Gracilaria gracilis GNS1m male)
ATGAGCGCGACGCAACAACAACAACAACAACAACAACAACAAGTGGACGT
GTCGGCGAGCGGCACGCAGCAGCTGCTGTCGTTCGCGGTGGCGCTAGCAA
AGCAGGGCGGCGCGCTGATCGAGGCGGCGTTCCGCGAGGAGCGCAACGAC
CACTACGCACGCAAGTCGCCTACAGACCCCGTGACGGACACGGACCACGC
GGTAGAGGCGCTGATCCTGGGCGCGATCCGCGCGCGTTTCCCGCAGCACA
AGCTGATCGGCGAGGAGAGCGCGAGCGAGGTGCAATGGAGCGCCGCGCCG
ACGTGGATCGTGGACCCGCTTGACGGCACCGCCAACTTCGTGCACCGCAT
CCCGCTGTGCGCGGTGAGCATCGCGTTCACGTACGAGAAGCAGCTCATCG
TGGGGGTGGTATACAACCCGCTGCAGAAGGAGCTGTACAGCGCGACGCAT
CTGACGCGCTCGCAGCTGAACGGGCGCGCCATCGGCGTATCGCGCGTGTC
GTCGCTGCGCTCCGCGTGCGTGGCGACGGAGGCCGGGTCAGAGCGCAGCG
CGCACAAGACGGAGTGGGTGCTGGCCAAGCTCGGGGCGGTGCTGCGCCAC
GACGCGCAGTGCGTGCGCATGCTGGGCTCGTGCGCGCTCAACATGGCGGC
CGTGGCGAGCGGGCGCGTGGACGTGCTGTACGAGCGCGGGCCGCGTGCGT
GGGACGTAGCGGCCGGCGCGCTGCTCGTCCGCCAGGCGGGCGGCGTCGTG
CTGAGCGGCCACTTGTTCGCCGCCGCCGCCGACTTTGACCTCACCGCGCG
CAGCGTGTTGGCGTTCACGCCCTCGCTGCGTGCCGAGCTGCTCCGCACGC
ACAAGCTGCAACCCCCGTAA
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