Ggra6667.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6667.t1
Unique NameGgra6667.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length304
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:67694..68605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009034896.1
Preferred nameCMS
PFAMsIspD
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00991
KEGG ReactionR05633
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG ModuleM00096
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006081,GO:0006082,GO:0006090,GO:0006629,GO:0006644,GO:0006720,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0008654,GO:0009058,GO:0009240,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016740,GO:0016772,GO:0016779,GO:0019288,GO:0019637,GO:0019682,GO:0019752,GO:0032787,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046490,GO:0050518,GO:0070567,GO:0071704,GO:0090407,GO:1901135,GO:1901576
Evalue5.15e-90
EggNOG OGsCOG1211@1|root,2QUUE@2759|Eukaryota
EC2.7.7.60
DescriptionD-ribitol-5-phosphate cytidylyltransferase activity
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6667Ggra6667Gracilaria gracilis GNS1m malegenetig00000056_pilon 67694..68605 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6667.t1.start1Ggra6667.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 67694..67696 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6667.t1.CDS1Ggra6667.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 67694..68605 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6667.t1.exon1Ggra6667.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 67694..68605 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6667.t1.stop1Ggra6667.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 68603..68605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6667.t1Ggra6667.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 67694..68605 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6667.t1 ID=Ggra6667.t1|Name=Ggra6667.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=304bp
MVVQSMKGFLMMDCATFVSPALIRPQLDRPSENRMRRKRMRYKPCQPRRR
TSVIDVNRRANVSMASSVSKVGDVSVILLAGGTGSRMKADRPKQFLELAG
KPVVEHSLLLFALMPEVKQLVLVMDKSYQEDFEPFGNRVDCELVFAEPGN
ERQDSVYNGLCKVMESASLVCVHDSARPLVSEENIRKVLRDGADHGAAVL
GVPSKATIKESVDGEFVLRTIPRKRLWEIQTPQVIKPDLLMKGFVKVRQD
KLEVTDDVSIVEQLGEPVKITLGEYTNIKLTTPEDMDIAEAILRDRARAR
ALM*
back to top

spliced messenger RNA

>Ggra6667.t1 ID=Ggra6667.t1|Name=Ggra6667.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000056_pilon:67694..68605+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTTCAGTCAATGAAAGGGTTTCTGATGATGGATTGTGCTACATT
TGTCTCACCTGCGTTGATTCGTCCTCAATTGGACCGACCTAGCGAAAACC
GCATGCGAAGAAAAAGGATGCGTTATAAACCATGCCAACCGAGACGACGA
ACGTCTGTTATCGATGTGAACAGGAGGGCAAACGTCTCTATGGCGTCGTC
GGTTTCAAAAGTTGGAGATGTGTCCGTGATCCTCTTGGCCGGTGGCACAG
GAAGCAGAATGAAAGCAGATCGCCCGAAGCAATTCTTGGAGTTGGCTGGG
AAGCCCGTCGTAGAGCATTCGCTTCTTTTGTTTGCATTAATGCCCGAAGT
GAAACAACTCGTACTAGTGATGGATAAATCTTACCAGGAAGATTTCGAAC
CTTTTGGAAACCGAGTAGACTGTGAATTAGTATTTGCCGAGCCTGGAAAT
GAGCGTCAAGACTCTGTCTACAATGGCCTGTGTAAAGTTATGGAATCAGC
TAGCCTTGTGTGCGTCCATGACTCAGCGAGACCATTGGTGAGTGAAGAAA
ACATTCGAAAAGTTCTTCGTGATGGAGCGGATCACGGGGCGGCTGTCCTA
GGAGTGCCATCAAAAGCCACAATCAAGGAAAGTGTTGACGGAGAGTTTGT
TCTTCGTACCATTCCTCGAAAGCGTCTCTGGGAAATTCAAACACCGCAGG
TTATCAAACCAGACTTGTTGATGAAGGGCTTTGTGAAGGTTCGTCAAGAC
AAACTAGAAGTTACAGACGACGTCTCCATTGTGGAGCAATTGGGAGAACC
GGTCAAGATCACTTTAGGAGAATACACAAATATCAAGCTAACGACCCCGG
AGGATATGGATATAGCGGAAGCGATTCTAAGAGATAGGGCGCGGGCTAGA
GCATTGATGTGA
back to top

protein sequence of Ggra6667.t1

>Ggra6667.t1 ID=Ggra6667.t1|Name=Ggra6667.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=304bp
MVVQSMKGFLMMDCATFVSPALIRPQLDRPSENRMRRKRMRYKPCQPRRR
TSVIDVNRRANVSMASSVSKVGDVSVILLAGGTGSRMKADRPKQFLELAG
KPVVEHSLLLFALMPEVKQLVLVMDKSYQEDFEPFGNRVDCELVFAEPGN
ERQDSVYNGLCKVMESASLVCVHDSARPLVSEENIRKVLRDGADHGAAVL
GVPSKATIKESVDGEFVLRTIPRKRLWEIQTPQVIKPDLLMKGFVKVRQD
KLEVTDDVSIVEQLGEPVKITLGEYTNIKLTTPEDMDIAEAILRDRARAR
ALM*
back to top

mRNA from alignment at tig00000056_pilon:67694..68605+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6667.t1 ID=Ggra6667.t1|Name=Ggra6667.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00000056_pilon:67694..68605+ (Gracilaria gracilis GNS1m male)
ATGGTTGTTCAGTCAATGAAAGGGTTTCTGATGATGGATTGTGCTACATT
TGTCTCACCTGCGTTGATTCGTCCTCAATTGGACCGACCTAGCGAAAACC
GCATGCGAAGAAAAAGGATGCGTTATAAACCATGCCAACCGAGACGACGA
ACGTCTGTTATCGATGTGAACAGGAGGGCAAACGTCTCTATGGCGTCGTC
GGTTTCAAAAGTTGGAGATGTGTCCGTGATCCTCTTGGCCGGTGGCACAG
GAAGCAGAATGAAAGCAGATCGCCCGAAGCAATTCTTGGAGTTGGCTGGG
AAGCCCGTCGTAGAGCATTCGCTTCTTTTGTTTGCATTAATGCCCGAAGT
GAAACAACTCGTACTAGTGATGGATAAATCTTACCAGGAAGATTTCGAAC
CTTTTGGAAACCGAGTAGACTGTGAATTAGTATTTGCCGAGCCTGGAAAT
GAGCGTCAAGACTCTGTCTACAATGGCCTGTGTAAAGTTATGGAATCAGC
TAGCCTTGTGTGCGTCCATGACTCAGCGAGACCATTGGTGAGTGAAGAAA
ACATTCGAAAAGTTCTTCGTGATGGAGCGGATCACGGGGCGGCTGTCCTA
GGAGTGCCATCAAAAGCCACAATCAAGGAAAGTGTTGACGGAGAGTTTGT
TCTTCGTACCATTCCTCGAAAGCGTCTCTGGGAAATTCAAACACCGCAGG
TTATCAAACCAGACTTGTTGATGAAGGGCTTTGTGAAGGTTCGTCAAGAC
AAACTAGAAGTTACAGACGACGTCTCCATTGTGGAGCAATTGGGAGAACC
GGTCAAGATCACTTTAGGAGAATACACAAATATCAAGCTAACGACCCCGG
AGGATATGGATATAGCGGAAGCGATTCTAAGAGATAGGGCGCGGGCTAGA
GCATTGATGTGA
back to top

Coding sequence (CDS) from alignment at tig00000056_pilon:67694..68605+

>Ggra6667.t1 ID=Ggra6667.t1|Name=Ggra6667.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00000056_pilon:67694..68605+ (Gracilaria gracilis GNS1m male)
ATGGTTGTTCAGTCAATGAAAGGGTTTCTGATGATGGATTGTGCTACATT
TGTCTCACCTGCGTTGATTCGTCCTCAATTGGACCGACCTAGCGAAAACC
GCATGCGAAGAAAAAGGATGCGTTATAAACCATGCCAACCGAGACGACGA
ACGTCTGTTATCGATGTGAACAGGAGGGCAAACGTCTCTATGGCGTCGTC
GGTTTCAAAAGTTGGAGATGTGTCCGTGATCCTCTTGGCCGGTGGCACAG
GAAGCAGAATGAAAGCAGATCGCCCGAAGCAATTCTTGGAGTTGGCTGGG
AAGCCCGTCGTAGAGCATTCGCTTCTTTTGTTTGCATTAATGCCCGAAGT
GAAACAACTCGTACTAGTGATGGATAAATCTTACCAGGAAGATTTCGAAC
CTTTTGGAAACCGAGTAGACTGTGAATTAGTATTTGCCGAGCCTGGAAAT
GAGCGTCAAGACTCTGTCTACAATGGCCTGTGTAAAGTTATGGAATCAGC
TAGCCTTGTGTGCGTCCATGACTCAGCGAGACCATTGGTGAGTGAAGAAA
ACATTCGAAAAGTTCTTCGTGATGGAGCGGATCACGGGGCGGCTGTCCTA
GGAGTGCCATCAAAAGCCACAATCAAGGAAAGTGTTGACGGAGAGTTTGT
TCTTCGTACCATTCCTCGAAAGCGTCTCTGGGAAATTCAAACACCGCAGG
TTATCAAACCAGACTTGTTGATGAAGGGCTTTGTGAAGGTTCGTCAAGAC
AAACTAGAAGTTACAGACGACGTCTCCATTGTGGAGCAATTGGGAGAACC
GGTCAAGATCACTTTAGGAGAATACACAAATATCAAGCTAACGACCCCGG
AGGATATGGATATAGCGGAAGCGATTCTAAGAGATAGGGCGCGGGCTAGA
GCATTGATGTGA
back to top