Ggra6666.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6666.t1
Unique NameGgra6666.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length441
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:65833..67155 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3075.A0A087SUC2
PFAMsWD40
Max annot lvl3041|Chlorophyta
Evalue1.66e-18
EggNOG OGsKOG2444@1|root,KOG2444@2759|Eukaryota,37K5W@33090|Viridiplantae,34KFU@3041|Chlorophyta
DescriptionWD domain, G-beta repeat
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6666Ggra6666Gracilaria gracilis GNS1m malegenetig00000056_pilon 65833..67155 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6666.t1.stop1Ggra6666.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 65833..65835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6666.t1.CDS1Ggra6666.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 65833..67155 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6666.t1.exon1Ggra6666.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 65833..67155 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6666.t1.start1Ggra6666.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 67153..67155 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6666.t1Ggra6666.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 65833..67155 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6666.t1 ID=Ggra6666.t1|Name=Ggra6666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=441bp
MTQDGTPNSYPENSSVEEWYLELKYAPICVAAHPSKPSLLSGFSEGEVVL
NVFSSTCGANGPQHMQKELYTIENSCIQTTFHGSENFVVASSKGKLLTFD
VSRTTPLETKQLPNDEEGNPRTATTFWVLDESSFLVGDDCGGLHLFDIRT
SQNAAVRTGETLGGSTCSCLEQADYISAIAPVCAFDKDAFLVTSGDGTLC
AYDLRFPPKPKLKLQYAFDSFQEDLLSLAVLPKHSLAVAGTLTGPLNLYN
LRFMDDSCDPDSAAHVDRFYGHPEAVNVVLPWEEDEDVIISASSDGIIRI
IDVPSRKLVGVLDYPVHTEESKFDSLDSLGKKKKKKKRKEERWPVEDMVR
MRGLNVPVFALLGHGSGIQFCDGSGLAEGNPTEQVDTERKSREVDLKQDD
QENSGGEAEVSGSSRKKKRRRKGFDDDKKKADQPSFFEGL*
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spliced messenger RNA

>Ggra6666.t1 ID=Ggra6666.t1|Name=Ggra6666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000056_pilon:65833..67155- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCAAGATGGCACTCCTAATTCATACCCTGAGAATTCTTCGGTTGA
GGAATGGTACCTCGAGCTCAAGTACGCACCGATCTGCGTCGCTGCTCATC
CATCAAAACCATCCTTGCTCTCGGGGTTTTCGGAAGGAGAAGTGGTTTTG
AATGTTTTTTCTTCAACGTGTGGAGCAAATGGACCCCAACACATGCAGAA
AGAACTGTATACTATTGAAAACTCATGCATACAAACAACTTTTCATGGTT
CCGAAAATTTTGTCGTTGCCTCCTCCAAGGGGAAGCTTCTTACGTTTGAT
GTGTCAAGGACAACGCCGCTAGAAACCAAACAGCTTCCCAACGACGAGGA
AGGGAACCCCCGAACTGCCACTACTTTCTGGGTTCTAGATGAATCTTCTT
TTCTGGTGGGCGACGACTGCGGTGGCCTTCATCTCTTCGATATAAGGACA
TCACAAAATGCAGCTGTGAGAACTGGTGAAACTCTCGGAGGATCAACATG
CTCATGTCTTGAACAAGCGGACTATATATCTGCAATTGCACCGGTCTGTG
CATTTGACAAGGATGCGTTCCTGGTAACATCTGGAGATGGAACTCTTTGC
GCTTACGATCTTCGCTTTCCACCAAAGCCGAAGCTGAAACTGCAATACGC
GTTTGACTCCTTTCAAGAAGATCTGCTTTCTCTGGCTGTGCTTCCAAAAC
ATTCTCTGGCTGTCGCAGGCACGCTGACTGGACCTCTAAATCTATACAAT
CTGCGTTTCATGGATGACTCTTGTGATCCCGACTCGGCTGCTCATGTCGA
CAGATTCTACGGACACCCCGAAGCTGTCAACGTGGTCTTGCCTTGGGAAG
AAGATGAGGACGTTATTATTTCAGCGAGCAGCGATGGCATCATTCGGATA
ATTGATGTACCAAGTCGAAAGCTGGTTGGAGTACTTGACTATCCTGTACA
CACAGAAGAATCAAAGTTTGATTCCTTAGACTCTCTTGGAAAAAAGAAAA
AGAAGAAGAAACGAAAAGAGGAGAGATGGCCGGTAGAAGACATGGTTAGG
ATGAGGGGGTTGAACGTACCAGTTTTTGCACTTTTGGGCCATGGCTCAGG
CATACAGTTTTGCGACGGAAGCGGTTTAGCCGAAGGAAATCCAACAGAAC
AAGTTGACACTGAGAGAAAAAGTCGAGAGGTAGATTTGAAACAAGACGAT
CAAGAGAACAGTGGAGGTGAAGCTGAGGTATCAGGTTCATCTAGAAAGAA
GAAGCGAAGGCGAAAGGGGTTTGACGATGATAAAAAGAAAGCAGATCAAC
CCAGTTTCTTCGAAGGTCTTTAG
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protein sequence of Ggra6666.t1

>Ggra6666.t1 ID=Ggra6666.t1|Name=Ggra6666.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=441bp
MTQDGTPNSYPENSSVEEWYLELKYAPICVAAHPSKPSLLSGFSEGEVVL
NVFSSTCGANGPQHMQKELYTIENSCIQTTFHGSENFVVASSKGKLLTFD
VSRTTPLETKQLPNDEEGNPRTATTFWVLDESSFLVGDDCGGLHLFDIRT
SQNAAVRTGETLGGSTCSCLEQADYISAIAPVCAFDKDAFLVTSGDGTLC
AYDLRFPPKPKLKLQYAFDSFQEDLLSLAVLPKHSLAVAGTLTGPLNLYN
LRFMDDSCDPDSAAHVDRFYGHPEAVNVVLPWEEDEDVIISASSDGIIRI
IDVPSRKLVGVLDYPVHTEESKFDSLDSLGKKKKKKKRKEERWPVEDMVR
MRGLNVPVFALLGHGSGIQFCDGSGLAEGNPTEQVDTERKSREVDLKQDD
QENSGGEAEVSGSSRKKKRRRKGFDDDKKKADQPSFFEGL*
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mRNA from alignment at tig00000056_pilon:65833..67155-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6666.t1 ID=Ggra6666.t1|Name=Ggra6666.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000056_pilon:65833..67155- (Gracilaria gracilis GNS1m male)
ATGACCCAAGATGGCACTCCTAATTCATACCCTGAGAATTCTTCGGTTGA
GGAATGGTACCTCGAGCTCAAGTACGCACCGATCTGCGTCGCTGCTCATC
CATCAAAACCATCCTTGCTCTCGGGGTTTTCGGAAGGAGAAGTGGTTTTG
AATGTTTTTTCTTCAACGTGTGGAGCAAATGGACCCCAACACATGCAGAA
AGAACTGTATACTATTGAAAACTCATGCATACAAACAACTTTTCATGGTT
CCGAAAATTTTGTCGTTGCCTCCTCCAAGGGGAAGCTTCTTACGTTTGAT
GTGTCAAGGACAACGCCGCTAGAAACCAAACAGCTTCCCAACGACGAGGA
AGGGAACCCCCGAACTGCCACTACTTTCTGGGTTCTAGATGAATCTTCTT
TTCTGGTGGGCGACGACTGCGGTGGCCTTCATCTCTTCGATATAAGGACA
TCACAAAATGCAGCTGTGAGAACTGGTGAAACTCTCGGAGGATCAACATG
CTCATGTCTTGAACAAGCGGACTATATATCTGCAATTGCACCGGTCTGTG
CATTTGACAAGGATGCGTTCCTGGTAACATCTGGAGATGGAACTCTTTGC
GCTTACGATCTTCGCTTTCCACCAAAGCCGAAGCTGAAACTGCAATACGC
GTTTGACTCCTTTCAAGAAGATCTGCTTTCTCTGGCTGTGCTTCCAAAAC
ATTCTCTGGCTGTCGCAGGCACGCTGACTGGACCTCTAAATCTATACAAT
CTGCGTTTCATGGATGACTCTTGTGATCCCGACTCGGCTGCTCATGTCGA
CAGATTCTACGGACACCCCGAAGCTGTCAACGTGGTCTTGCCTTGGGAAG
AAGATGAGGACGTTATTATTTCAGCGAGCAGCGATGGCATCATTCGGATA
ATTGATGTACCAAGTCGAAAGCTGGTTGGAGTACTTGACTATCCTGTACA
CACAGAAGAATCAAAGTTTGATTCCTTAGACTCTCTTGGAAAAAAGAAAA
AGAAGAAGAAACGAAAAGAGGAGAGATGGCCGGTAGAAGACATGGTTAGG
ATGAGGGGGTTGAACGTACCAGTTTTTGCACTTTTGGGCCATGGCTCAGG
CATACAGTTTTGCGACGGAAGCGGTTTAGCCGAAGGAAATCCAACAGAAC
AAGTTGACACTGAGAGAAAAAGTCGAGAGGTAGATTTGAAACAAGACGAT
CAAGAGAACAGTGGAGGTGAAGCTGAGGTATCAGGTTCATCTAGAAAGAA
GAAGCGAAGGCGAAAGGGGTTTGACGATGATAAAAAGAAAGCAGATCAAC
CCAGTTTCTTCGAAGGTCTTTAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:65833..67155-

>Ggra6666.t1 ID=Ggra6666.t1|Name=Ggra6666.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1323bp|location=Sequence derived from alignment at tig00000056_pilon:65833..67155- (Gracilaria gracilis GNS1m male)
ATGACCCAAGATGGCACTCCTAATTCATACCCTGAGAATTCTTCGGTTGA
GGAATGGTACCTCGAGCTCAAGTACGCACCGATCTGCGTCGCTGCTCATC
CATCAAAACCATCCTTGCTCTCGGGGTTTTCGGAAGGAGAAGTGGTTTTG
AATGTTTTTTCTTCAACGTGTGGAGCAAATGGACCCCAACACATGCAGAA
AGAACTGTATACTATTGAAAACTCATGCATACAAACAACTTTTCATGGTT
CCGAAAATTTTGTCGTTGCCTCCTCCAAGGGGAAGCTTCTTACGTTTGAT
GTGTCAAGGACAACGCCGCTAGAAACCAAACAGCTTCCCAACGACGAGGA
AGGGAACCCCCGAACTGCCACTACTTTCTGGGTTCTAGATGAATCTTCTT
TTCTGGTGGGCGACGACTGCGGTGGCCTTCATCTCTTCGATATAAGGACA
TCACAAAATGCAGCTGTGAGAACTGGTGAAACTCTCGGAGGATCAACATG
CTCATGTCTTGAACAAGCGGACTATATATCTGCAATTGCACCGGTCTGTG
CATTTGACAAGGATGCGTTCCTGGTAACATCTGGAGATGGAACTCTTTGC
GCTTACGATCTTCGCTTTCCACCAAAGCCGAAGCTGAAACTGCAATACGC
GTTTGACTCCTTTCAAGAAGATCTGCTTTCTCTGGCTGTGCTTCCAAAAC
ATTCTCTGGCTGTCGCAGGCACGCTGACTGGACCTCTAAATCTATACAAT
CTGCGTTTCATGGATGACTCTTGTGATCCCGACTCGGCTGCTCATGTCGA
CAGATTCTACGGACACCCCGAAGCTGTCAACGTGGTCTTGCCTTGGGAAG
AAGATGAGGACGTTATTATTTCAGCGAGCAGCGATGGCATCATTCGGATA
ATTGATGTACCAAGTCGAAAGCTGGTTGGAGTACTTGACTATCCTGTACA
CACAGAAGAATCAAAGTTTGATTCCTTAGACTCTCTTGGAAAAAAGAAAA
AGAAGAAGAAACGAAAAGAGGAGAGATGGCCGGTAGAAGACATGGTTAGG
ATGAGGGGGTTGAACGTACCAGTTTTTGCACTTTTGGGCCATGGCTCAGG
CATACAGTTTTGCGACGGAAGCGGTTTAGCCGAAGGAAATCCAACAGAAC
AAGTTGACACTGAGAGAAAAAGTCGAGAGGTAGATTTGAAACAAGACGAT
CAAGAGAACAGTGGAGGTGAAGCTGAGGTATCAGGTTCATCTAGAAAGAA
GAAGCGAAGGCGAAAGGGGTTTGACGATGATAAAAAGAAAGCAGATCAAC
CCAGTTTCTTCGAAGGTCTTTAG
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