Ggra6661.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6661.t1
Unique Name	Ggra6661.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	683

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:55244..57292 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005709375.1
PFAMs	DnaJ,Sec63
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09537,ko:K09540
KEGG TC	3.A.5.8,3.A.5.9
KEGG Pathway	ko03060,ko04141,map03060,map04141
GOs	GO:0001655,GO:0001889,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005794,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0010259,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0033036,GO:0033365,GO:0034613,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0048513,GO:0048731,GO:0048732,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061008,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071944,GO:0072001,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098827
Evalue	1.13e-79
EggNOG OGs	COG5407@1\|root,KOG0721@2759\|Eukaryota
Description	Translocation protein SEC63
COG category	U
BRITE	ko00000,ko00001,ko02044,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6661	Ggra6661	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 55244..57292 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6661.t1.stop1	Ggra6661.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 55244..55246 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6661.t1.CDS1	Ggra6661.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 55244..57292 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6661.t1.exon1	Ggra6661.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 55244..57292 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6661.t1.start1	Ggra6661.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 57290..57292 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6661.t1	Ggra6661.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 55244..57292 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:55244..57292-
coding sequence from alignment at tig00000056_pilon:55244..57292-

mRNA sequence

>Ggra6661.t1 ID=Ggra6661.t1|Name=Ggra6661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=683bp
MGAYNTEDAGKSGNLPYDDVAFQSFLLTLLAVYCIPVLLFRSVRFVRRFR
HVPTALDHAKAAWCPCSLCQLKKERVEPRKARFSYHDLFLFCCTVLLVYT
ALNVYKANLNIEPPFDPFEILGVSEFTAEKNIKRAYRRLSVIHHPDKNRG
DPLAAERFIKITKAYAALTDPVSKENYEKYGNPDGRVSPTLEIGLPQWVA
ESRNGILFVYFAFLVIVFPLVVGLWWRKRSKELTRDILTDTFVLYRQTLQ
QTGRLRDLLGAFCGSVEFQHLYRSENNDALKELAESLKRSGRTEVKKTKT
VVQPTPAHSQNLMVMTAYLARMPIPKELEYIKDAILQRVEPLMTALTDTV
GAFQRPDCQAAWNKTFMHGHTLYMANAIVLTQSLIQALDEKSSPFMQIPH
FTEKEVRYCLNSRTPSIKTIYDFMKLEMSEQRNLLRGFSDDEFLDVRAFC
DRFPGANLEVSDPVVEGEEDGTVHAGDTVTIRAKLTVMRRSGSVFSPHTP
NIGVKKEEAWWIWLADERLQCPIDVKRLTPKKAKGYGPKKRHKHSADDER
RAEKAEMIEELLKDPRVTRFEVKFRFQAPRPGQYNLEVKTACDCYNGAAK
GTVIKMKVEKEVEPPSVDSVKYFDTDDESSAEEKSSDEEEGATDDEYEYI
EVTDDESEAGDFDDDDDDEHGISKAPHGDAAS*

spliced messenger RNA

>Ggra6661.t1 ID=Ggra6661.t1|Name=Ggra6661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2049bp|location=Sequence derived from alignment at tig00000056_pilon:55244..57292- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCTACAACACTGAAGATGCCGGCAAGTCTGGAAATCTCCCCTA
CGATGATGTCGCCTTTCAGTCTTTCTTACTTACCTTGCTCGCTGTGTACT
GCATCCCTGTGCTGCTGTTCCGCTCCGTCAGGTTTGTCCGCCGTTTCAGA
CATGTGCCCACCGCCTTGGACCACGCCAAGGCTGCCTGGTGTCCGTGTTC
CTTGTGTCAGCTCAAGAAGGAACGCGTTGAGCCCAGGAAGGCTCGCTTTT
CTTATCATGATTTGTTCCTATTTTGTTGCACCGTACTACTTGTGTATACC
GCCCTCAACGTATACAAGGCAAACCTCAACATTGAACCTCCCTTTGACCC
CTTTGAAATTCTCGGTGTCTCCGAGTTTACCGCTGAAAAAAATATCAAAC
GCGCCTACAGAAGACTGTCCGTCATTCATCACCCGGACAAGAATAGAGGC
GACCCCCTCGCTGCAGAGCGCTTTATCAAGATAACAAAGGCCTACGCCGC
GCTCACAGACCCTGTCTCCAAGGAGAACTACGAAAAGTATGGAAACCCCG
ACGGACGCGTCTCGCCCACTTTGGAGATCGGGCTACCACAGTGGGTGGCT
GAAAGTCGCAACGGAATTTTGTTCGTGTACTTTGCATTTCTGGTCATCGT
CTTCCCGCTCGTTGTGGGGCTGTGGTGGCGTAAGCGCAGTAAGGAGCTCA
CTCGTGACATTCTTACCGATACGTTTGTGCTCTACAGACAGACTTTGCAG
CAGACCGGCCGTTTGAGAGACTTGTTGGGCGCCTTTTGCGGAAGCGTTGA
GTTTCAACATTTGTACAGATCTGAAAATAATGACGCGCTCAAGGAACTCG
CTGAGTCTCTCAAACGGAGCGGACGTACAGAGGTCAAAAAGACAAAGACT
GTGGTTCAACCTACACCTGCACATTCACAGAACCTCATGGTCATGACGGC
GTACCTTGCGCGCATGCCCATTCCGAAGGAGCTTGAGTATATCAAGGATG
CCATACTACAAAGGGTTGAGCCCCTGATGACTGCTCTCACTGATACTGTT
GGCGCGTTTCAACGACCAGATTGCCAAGCAGCGTGGAACAAGACCTTCAT
GCATGGCCATACTTTGTACATGGCCAACGCAATTGTTCTCACGCAGAGCT
TGATACAGGCTCTGGATGAGAAGAGCTCGCCGTTTATGCAGATTCCGCAT
TTCACTGAGAAGGAAGTGAGGTATTGTCTCAATTCGCGCACGCCGAGTAT
TAAGACCATTTATGATTTCATGAAGCTGGAGATGAGCGAGCAACGCAACT
TGCTGCGCGGGTTCAGCGATGATGAGTTTCTGGATGTGAGGGCGTTCTGC
GATCGATTCCCGGGAGCTAATTTGGAAGTTAGCGACCCTGTGGTGGAAGG
TGAAGAGGACGGCACAGTGCACGCGGGTGATACTGTGACAATTCGGGCGA
AATTGACGGTTATGAGAAGAAGCGGGTCGGTGTTCTCACCGCACACGCCG
AACATTGGGGTGAAGAAGGAGGAGGCGTGGTGGATTTGGTTGGCGGACGA
ACGGCTGCAATGTCCCATTGACGTGAAGCGGCTGACGCCAAAGAAGGCAA
AGGGGTACGGACCGAAGAAGCGACACAAGCACAGCGCGGACGACGAACGC
CGTGCGGAGAAGGCGGAAATGATTGAAGAACTGCTGAAAGACCCGCGCGT
GACGCGATTCGAAGTGAAGTTCAGATTCCAGGCGCCAAGGCCCGGACAGT
ACAATCTGGAGGTGAAGACGGCGTGCGACTGCTACAATGGGGCGGCGAAG
GGGACGGTGATCAAGATGAAGGTGGAGAAGGAGGTGGAGCCGCCATCAGT
GGATAGCGTCAAGTACTTTGACACGGACGACGAGTCGTCGGCGGAGGAGA
AGAGCTCAGACGAGGAGGAGGGGGCCACGGACGACGAGTACGAGTACATC
GAGGTGACGGACGACGAGTCGGAGGCTGGCGACTTCGACGACGATGACGA
CGACGAGCACGGGATCAGTAAGGCGCCACACGGGGACGCGGCGTCGTGA

protein sequence of Ggra6661.t1

>Ggra6661.t1 ID=Ggra6661.t1|Name=Ggra6661.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=683bp
MGAYNTEDAGKSGNLPYDDVAFQSFLLTLLAVYCIPVLLFRSVRFVRRFR
HVPTALDHAKAAWCPCSLCQLKKERVEPRKARFSYHDLFLFCCTVLLVYT
ALNVYKANLNIEPPFDPFEILGVSEFTAEKNIKRAYRRLSVIHHPDKNRG
DPLAAERFIKITKAYAALTDPVSKENYEKYGNPDGRVSPTLEIGLPQWVA
ESRNGILFVYFAFLVIVFPLVVGLWWRKRSKELTRDILTDTFVLYRQTLQ
QTGRLRDLLGAFCGSVEFQHLYRSENNDALKELAESLKRSGRTEVKKTKT
VVQPTPAHSQNLMVMTAYLARMPIPKELEYIKDAILQRVEPLMTALTDTV
GAFQRPDCQAAWNKTFMHGHTLYMANAIVLTQSLIQALDEKSSPFMQIPH
FTEKEVRYCLNSRTPSIKTIYDFMKLEMSEQRNLLRGFSDDEFLDVRAFC
DRFPGANLEVSDPVVEGEEDGTVHAGDTVTIRAKLTVMRRSGSVFSPHTP
NIGVKKEEAWWIWLADERLQCPIDVKRLTPKKAKGYGPKKRHKHSADDER
RAEKAEMIEELLKDPRVTRFEVKFRFQAPRPGQYNLEVKTACDCYNGAAK
GTVIKMKVEKEVEPPSVDSVKYFDTDDESSAEEKSSDEEEGATDDEYEYI
EVTDDESEAGDFDDDDDDEHGISKAPHGDAAS*

mRNA from alignment at tig00000056_pilon:55244..57292-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6661.t1 ID=Ggra6661.t1|Name=Ggra6661.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2049bp|location=Sequence derived from alignment at tig00000056_pilon:55244..57292- (Gracilaria gracilis GNS1m male)
ATGGGCGCCTACAACACTGAAGATGCCGGCAAGTCTGGAAATCTCCCCTA
CGATGATGTCGCCTTTCAGTCTTTCTTACTTACCTTGCTCGCTGTGTACT
GCATCCCTGTGCTGCTGTTCCGCTCCGTCAGGTTTGTCCGCCGTTTCAGA
CATGTGCCCACCGCCTTGGACCACGCCAAGGCTGCCTGGTGTCCGTGTTC
CTTGTGTCAGCTCAAGAAGGAACGCGTTGAGCCCAGGAAGGCTCGCTTTT
CTTATCATGATTTGTTCCTATTTTGTTGCACCGTACTACTTGTGTATACC
GCCCTCAACGTATACAAGGCAAACCTCAACATTGAACCTCCCTTTGACCC
CTTTGAAATTCTCGGTGTCTCCGAGTTTACCGCTGAAAAAAATATCAAAC
GCGCCTACAGAAGACTGTCCGTCATTCATCACCCGGACAAGAATAGAGGC
GACCCCCTCGCTGCAGAGCGCTTTATCAAGATAACAAAGGCCTACGCCGC
GCTCACAGACCCTGTCTCCAAGGAGAACTACGAAAAGTATGGAAACCCCG
ACGGACGCGTCTCGCCCACTTTGGAGATCGGGCTACCACAGTGGGTGGCT
GAAAGTCGCAACGGAATTTTGTTCGTGTACTTTGCATTTCTGGTCATCGT
CTTCCCGCTCGTTGTGGGGCTGTGGTGGCGTAAGCGCAGTAAGGAGCTCA
CTCGTGACATTCTTACCGATACGTTTGTGCTCTACAGACAGACTTTGCAG
CAGACCGGCCGTTTGAGAGACTTGTTGGGCGCCTTTTGCGGAAGCGTTGA
GTTTCAACATTTGTACAGATCTGAAAATAATGACGCGCTCAAGGAACTCG
CTGAGTCTCTCAAACGGAGCGGACGTACAGAGGTCAAAAAGACAAAGACT
GTGGTTCAACCTACACCTGCACATTCACAGAACCTCATGGTCATGACGGC
GTACCTTGCGCGCATGCCCATTCCGAAGGAGCTTGAGTATATCAAGGATG
CCATACTACAAAGGGTTGAGCCCCTGATGACTGCTCTCACTGATACTGTT
GGCGCGTTTCAACGACCAGATTGCCAAGCAGCGTGGAACAAGACCTTCAT
GCATGGCCATACTTTGTACATGGCCAACGCAATTGTTCTCACGCAGAGCT
TGATACAGGCTCTGGATGAGAAGAGCTCGCCGTTTATGCAGATTCCGCAT
TTCACTGAGAAGGAAGTGAGGTATTGTCTCAATTCGCGCACGCCGAGTAT
TAAGACCATTTATGATTTCATGAAGCTGGAGATGAGCGAGCAACGCAACT
TGCTGCGCGGGTTCAGCGATGATGAGTTTCTGGATGTGAGGGCGTTCTGC
GATCGATTCCCGGGAGCTAATTTGGAAGTTAGCGACCCTGTGGTGGAAGG
TGAAGAGGACGGCACAGTGCACGCGGGTGATACTGTGACAATTCGGGCGA
AATTGACGGTTATGAGAAGAAGCGGGTCGGTGTTCTCACCGCACACGCCG
AACATTGGGGTGAAGAAGGAGGAGGCGTGGTGGATTTGGTTGGCGGACGA
ACGGCTGCAATGTCCCATTGACGTGAAGCGGCTGACGCCAAAGAAGGCAA
AGGGGTACGGACCGAAGAAGCGACACAAGCACAGCGCGGACGACGAACGC
CGTGCGGAGAAGGCGGAAATGATTGAAGAACTGCTGAAAGACCCGCGCGT
GACGCGATTCGAAGTGAAGTTCAGATTCCAGGCGCCAAGGCCCGGACAGT
ACAATCTGGAGGTGAAGACGGCGTGCGACTGCTACAATGGGGCGGCGAAG
GGGACGGTGATCAAGATGAAGGTGGAGAAGGAGGTGGAGCCGCCATCAGT
GGATAGCGTCAAGTACTTTGACACGGACGACGAGTCGTCGGCGGAGGAGA
AGAGCTCAGACGAGGAGGAGGGGGCCACGGACGACGAGTACGAGTACATC
GAGGTGACGGACGACGAGTCGGAGGCTGGCGACTTCGACGACGATGACGA
CGACGAGCACGGGATCAGTAAGGCGCCACACGGGGACGCGGCGTCGTGA

Coding sequence (CDS) from alignment at tig00000056_pilon:55244..57292-

>Ggra6661.t1 ID=Ggra6661.t1|Name=Ggra6661.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2049bp|location=Sequence derived from alignment at tig00000056_pilon:55244..57292- (Gracilaria gracilis GNS1m male)
ATGGGCGCCTACAACACTGAAGATGCCGGCAAGTCTGGAAATCTCCCCTA
CGATGATGTCGCCTTTCAGTCTTTCTTACTTACCTTGCTCGCTGTGTACT
GCATCCCTGTGCTGCTGTTCCGCTCCGTCAGGTTTGTCCGCCGTTTCAGA
CATGTGCCCACCGCCTTGGACCACGCCAAGGCTGCCTGGTGTCCGTGTTC
CTTGTGTCAGCTCAAGAAGGAACGCGTTGAGCCCAGGAAGGCTCGCTTTT
CTTATCATGATTTGTTCCTATTTTGTTGCACCGTACTACTTGTGTATACC
GCCCTCAACGTATACAAGGCAAACCTCAACATTGAACCTCCCTTTGACCC
CTTTGAAATTCTCGGTGTCTCCGAGTTTACCGCTGAAAAAAATATCAAAC
GCGCCTACAGAAGACTGTCCGTCATTCATCACCCGGACAAGAATAGAGGC
GACCCCCTCGCTGCAGAGCGCTTTATCAAGATAACAAAGGCCTACGCCGC
GCTCACAGACCCTGTCTCCAAGGAGAACTACGAAAAGTATGGAAACCCCG
ACGGACGCGTCTCGCCCACTTTGGAGATCGGGCTACCACAGTGGGTGGCT
GAAAGTCGCAACGGAATTTTGTTCGTGTACTTTGCATTTCTGGTCATCGT
CTTCCCGCTCGTTGTGGGGCTGTGGTGGCGTAAGCGCAGTAAGGAGCTCA
CTCGTGACATTCTTACCGATACGTTTGTGCTCTACAGACAGACTTTGCAG
CAGACCGGCCGTTTGAGAGACTTGTTGGGCGCCTTTTGCGGAAGCGTTGA
GTTTCAACATTTGTACAGATCTGAAAATAATGACGCGCTCAAGGAACTCG
CTGAGTCTCTCAAACGGAGCGGACGTACAGAGGTCAAAAAGACAAAGACT
GTGGTTCAACCTACACCTGCACATTCACAGAACCTCATGGTCATGACGGC
GTACCTTGCGCGCATGCCCATTCCGAAGGAGCTTGAGTATATCAAGGATG
CCATACTACAAAGGGTTGAGCCCCTGATGACTGCTCTCACTGATACTGTT
GGCGCGTTTCAACGACCAGATTGCCAAGCAGCGTGGAACAAGACCTTCAT
GCATGGCCATACTTTGTACATGGCCAACGCAATTGTTCTCACGCAGAGCT
TGATACAGGCTCTGGATGAGAAGAGCTCGCCGTTTATGCAGATTCCGCAT
TTCACTGAGAAGGAAGTGAGGTATTGTCTCAATTCGCGCACGCCGAGTAT
TAAGACCATTTATGATTTCATGAAGCTGGAGATGAGCGAGCAACGCAACT
TGCTGCGCGGGTTCAGCGATGATGAGTTTCTGGATGTGAGGGCGTTCTGC
GATCGATTCCCGGGAGCTAATTTGGAAGTTAGCGACCCTGTGGTGGAAGG
TGAAGAGGACGGCACAGTGCACGCGGGTGATACTGTGACAATTCGGGCGA
AATTGACGGTTATGAGAAGAAGCGGGTCGGTGTTCTCACCGCACACGCCG
AACATTGGGGTGAAGAAGGAGGAGGCGTGGTGGATTTGGTTGGCGGACGA
ACGGCTGCAATGTCCCATTGACGTGAAGCGGCTGACGCCAAAGAAGGCAA
AGGGGTACGGACCGAAGAAGCGACACAAGCACAGCGCGGACGACGAACGC
CGTGCGGAGAAGGCGGAAATGATTGAAGAACTGCTGAAAGACCCGCGCGT
GACGCGATTCGAAGTGAAGTTCAGATTCCAGGCGCCAAGGCCCGGACAGT
ACAATCTGGAGGTGAAGACGGCGTGCGACTGCTACAATGGGGCGGCGAAG
GGGACGGTGATCAAGATGAAGGTGGAGAAGGAGGTGGAGCCGCCATCAGT
GGATAGCGTCAAGTACTTTGACACGGACGACGAGTCGTCGGCGGAGGAGA
AGAGCTCAGACGAGGAGGAGGGGGCCACGGACGACGAGTACGAGTACATC
GAGGTGACGGACGACGAGTCGGAGGCTGGCGACTTCGACGACGATGACGA
CGACGAGCACGGGATCAGTAAGGCGCCACACGGGGACGCGGCGTCGTGA