Ggra6660.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6660.t1
Unique NameGgra6660.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:53774..54844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708291.1
PFAMsCK_II_beta
Max annot lvl2759|Eukaryota
KEGG koko:K03115
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
Evalue1.39e-106
EggNOG OGsCOG5041@1|root,KOG3092@2759|Eukaryota
Descriptionprotein kinase regulator activity
COG categoryDKT
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6660Ggra6660Gracilaria gracilis GNS1m malegenetig00000056_pilon 53774..54844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6660.t1Ggra6660.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 53774..54844 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6660.t1.stop1Ggra6660.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 53774..53776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6660.t1.CDS1Ggra6660.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 53774..53881 -
Ggra6660.t1.CDS2Ggra6660.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 53977..54079 -
Ggra6660.t1.CDS3Ggra6660.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 54147..54844 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6660.t1.exon1Ggra6660.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 53774..53881 -
Ggra6660.t1.exon2Ggra6660.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 53977..54079 -
Ggra6660.t1.exon3Ggra6660.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 54147..54844 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6660.t1.intron1Ggra6660.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 53882..53976 -
Ggra6660.t1.intron2Ggra6660.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 54080..54146 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6660.t1.start1Ggra6660.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 54842..54844 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6660.t1 ID=Ggra6660.t1|Name=Ggra6660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MSKTTANADGFTSGDSIDSGASEDTTWISWFSQLKGNEFFCEVEEDFIND
DFNLTGLSSQVTYYNYALDTILDVDIPEGELDERQQELVEVSAETLYGLI
HARYILTAHGMNAMRSKFIDGAFGRCPRVFCHGQQVLPVGLSDVPRNSTV
KTFCPRCWDLYFPRSRIHNNLDGAFWGTTFPHMFLHTYSTLVPKRNPEHY
VPRIYGFKIHRSAVQVRRNRSDEDTHNHVDDRNLIDVLLHDRLFYASSSS
FVCVRRDEISSQIMPYIRRNQFFDSNVTHCFEIFPFTAPILSSLFVFPFP
LG*
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spliced messenger RNA

>Ggra6660.t1 ID=Ggra6660.t1|Name=Ggra6660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000056_pilon:53774..54844- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAAGACAACCGCCAATGCAGATGGTTTCACCTCCGGCGACTCTAT
TGATTCCGGCGCTTCCGAGGACACTACTTGGATTTCCTGGTTCTCGCAAC
TCAAGGGCAACGAGTTCTTCTGCGAAGTCGAAGAGGATTTCATAAACGAC
GACTTCAATCTGACCGGCTTGTCCTCGCAGGTCACTTACTATAACTATGC
GCTCGATACCATCCTGGACGTCGACATCCCTGAGGGCGAGTTGGACGAGC
GTCAGCAGGAACTCGTCGAGGTCTCCGCAGAGACGCTGTATGGCCTCATT
CACGCGCGCTATATCCTCACCGCCCACGGCATGAACGCCATGCGCTCCAA
GTTCATCGACGGCGCCTTTGGTCGTTGCCCGCGCGTCTTTTGTCACGGCC
AACAGGTGCTGCCCGTCGGCTTGAGCGACGTGCCGCGAAACTCTACCGTC
AAGACCTTCTGTCCCAGGTGCTGGGACCTGTACTTTCCCCGATCGCGCAT
TCACAACAACTTGGATGGCGCCTTTTGGGGCACCACCTTTCCTCACATGT
TTTTGCACACGTACAGCACGCTGGTTCCTAAGCGCAATCCCGAACACTAT
GTGCCCAGAATATACGGCTTCAAGATACACAGGTCTGCCGTTCAAGTACG
TCGCAACCGGAGCGATGAGGACACCCACAATCATGTTGACGATCGCAATC
TAATCGACGTGTTGCTTCATGACCGATTGTTCTACGCTTCGAGTTCCTCG
TTCGTGTGTGTGCGTCGTGATGAAATATCGTCTCAAATCATGCCTTACAT
TCGCCGTAATCAATTCTTCGATTCGAACGTCACACATTGCTTTGAGATCT
TTCCCTTTACCGCCCCCATTTTGTCCTCCCTTTTTGTCTTCCCCTTTCCC
CTTGGTTGA
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protein sequence of Ggra6660.t1

>Ggra6660.t1 ID=Ggra6660.t1|Name=Ggra6660.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MSKTTANADGFTSGDSIDSGASEDTTWISWFSQLKGNEFFCEVEEDFIND
DFNLTGLSSQVTYYNYALDTILDVDIPEGELDERQQELVEVSAETLYGLI
HARYILTAHGMNAMRSKFIDGAFGRCPRVFCHGQQVLPVGLSDVPRNSTV
KTFCPRCWDLYFPRSRIHNNLDGAFWGTTFPHMFLHTYSTLVPKRNPEHY
VPRIYGFKIHRSAVQVRRNRSDEDTHNHVDDRNLIDVLLHDRLFYASSSS
FVCVRRDEISSQIMPYIRRNQFFDSNVTHCFEIFPFTAPILSSLFVFPFP
LG*
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mRNA from alignment at tig00000056_pilon:53774..54844-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6660.t1 ID=Ggra6660.t1|Name=Ggra6660.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000056_pilon:53774..54844- (Gracilaria gracilis GNS1m male)
ATGTCGAAGACAACCGCCAATGCAGATGGTTTCACCTCCGGCGACTCTAT
TGATTCCGGCGCTTCCGAGGACACTACTTGGATTTCCTGGTTCTCGCAAC
TCAAGGGCAACGAGTTCTTCTGCGAAGTCGAAGAGGATTTCATAAACGAC
GACTTCAATCTGACCGGCTTGTCCTCGCAGGTCACTTACTATAACTATGC
GCTCGATACCATCCTGGACGTCGACATCCCTGAGGGCGAGTTGGACGAGC
GTCAGCAGGAACTCGTCGAGGTCTCCGCAGAGACGCTGTATGGCCTCATT
CACGCGCGCTATATCCTCACCGCCCACGGCATGAACGCCATGCGCTCCAA
GTTCATCGACGGCGCCTTTGGTCGTTGCCCGCGCGTCTTTTGTCACGGCC
AACAGGTGCTGCCCGTCGGCTTGAGCGACGTGCCGCGAAACTCTACCGTC
AAGACCTTCTGTCCCAGGTGCTGGGACCTGTACTTTCCCCGATCGCGCAT
TCACAACAACTTGGATGGCGCCTTTTGGGGCACCACCTTTCCTCACATGT
TTTTGCACACGTACAGCACGCTGGTTCCTAAGCGCAATCCCGAACACTAT
GTGCCCAGAATATACGGCTTCAAGATACACAGGTCTGCCGTTCAAGTACG
TCGCAACCGGAGCGATGAGGACACCCACAATCATGTTGACGATCGCAAGT
ATAGGAACGAATCACACTCAAGACACTATCGGAATAATTCGCGAGCGCTT
TCATTACCCACTCAGTCTAATCGACGTGTTGCTTCATGACCGATTGTTCT
ACGCTTCGAGTTCCTCGTTCGTGTGTGTGCGTCGTGATGAAATATCGTCT
CAAATCATGCCTTACATTGTACGCCCCGCCCCAACTTATCTTTGGCATTC
TTCGCAATAACAAGCACACTAGCCTTAACTTTGTGTACATCTGTTTTCTC
GCAATACACTTAGCGCCGTAATCAATTCTTCGATTCGAACGTCACACATT
GCTTTGAGATCTTTCCCTTTACCGCCCCCATTTTGTCCTCCCTTTTTGTC
TTCCCCTTTCCCCTTGGTTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:53774..54844-

>Ggra6660.t1 ID=Ggra6660.t1|Name=Ggra6660.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000056_pilon:53774..54844- (Gracilaria gracilis GNS1m male)
ATGTCGAAGACAACCGCCAATGCAGATGGTTTCACCTCCGGCGACTCTAT
TGATTCCGGCGCTTCCGAGGACACTACTTGGATTTCCTGGTTCTCGCAAC
TCAAGGGCAACGAGTTCTTCTGCGAAGTCGAAGAGGATTTCATAAACGAC
GACTTCAATCTGACCGGCTTGTCCTCGCAGGTCACTTACTATAACTATGC
GCTCGATACCATCCTGGACGTCGACATCCCTGAGGGCGAGTTGGACGAGC
GTCAGCAGGAACTCGTCGAGGTCTCCGCAGAGACGCTGTATGGCCTCATT
CACGCGCGCTATATCCTCACCGCCCACGGCATGAACGCCATGCGCTCCAA
GTTCATCGACGGCGCCTTTGGTCGTTGCCCGCGCGTCTTTTGTCACGGCC
AACAGGTGCTGCCCGTCGGCTTGAGCGACGTGCCGCGAAACTCTACCGTC
AAGACCTTCTGTCCCAGGTGCTGGGACCTGTACTTTCCCCGATCGCGCAT
TCACAACAACTTGGATGGCGCCTTTTGGGGCACCACCTTTCCTCACATGT
TTTTGCACACGTACAGCACGCTGGTTCCTAAGCGCAATCCCGAACACTAT
GTGCCCAGAATATACGGCTTCAAGATACACAGGTCTGCCGTTCAAGTACG
TCGCAACCGGAGCGATGAGGACACCCACAATCATGTTGACGATCGCAATC
TAATCGACGTGTTGCTTCATGACCGATTGTTCTACGCTTCGAGTTCCTCG
TTCGTGTGTGTGCGTCGTGATGAAATATCGTCTCAAATCATGCCTTACAT
TCGCCGTAATCAATTCTTCGATTCGAACGTCACACATTGCTTTGAGATCT
TTCCCTTTACCGCCCCCATTTTGTCCTCCCTTTTTGTCTTCCCCTTTCCC
CTTGGTTGA
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