Ggra6635.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6635.t1
Unique NameGgra6635.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000859_piloncontigtig00000859_pilon:350987..351652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15726219
PFAMsMethyltransf_11,Methyltransf_25
Max annot lvl33208|Metazoa
Evalue1.61e-23
EggNOG OGsCOG0500@1|root,KOG1541@2759|Eukaryota,3A06N@33154|Opisthokonta,3BUH6@33208|Metazoa
DescriptionubiE/COQ5 methyltransferase family
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6635Ggra6635Gracilaria gracilis GNS1m malegenetig00000859_pilon 350987..351652 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6635.t1.stop1Ggra6635.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000859_pilon 350987..350989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6635.t1.CDS1Ggra6635.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000859_pilon 350987..351652 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6635.t1.exon1Ggra6635.t1.exon1Gracilaria gracilis GNS1m maleexontig00000859_pilon 350987..351652 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6635.t1.start1Ggra6635.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000859_pilon 351650..351652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6635.t1Ggra6635.t1Gracilaria gracilis GNS1m malepolypeptidetig00000859_pilon 350987..351652 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6635.t1 ID=Ggra6635.t1|Name=Ggra6635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MSSAPKDQKVSAYRQWSKSYDADVLGSEYVAFDIAAEKLSRVIRNDDALR
TLEMVHMLDAGCGTGLCAVPFKKVAEEFQLPFRLTGVDFSEDMLQKASHR
EVYDELHCADMNYPLPVVAGTQHLCMSIGVFLEGHCGPKALGNILACLAA
GGYAVISIRQKHFSTLKDQFMAVIDETGCTIIEQSVCAYLGPVEAVYMVL
RKAQDKAGHTTGDLSCELLRE*
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spliced messenger RNA

>Ggra6635.t1 ID=Ggra6635.t1|Name=Ggra6635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000859_pilon:350987..351652- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCGCTCCCAAGGATCAGAAGGTCAGTGCGTATCGTCAGTGGTC
AAAAAGCTACGATGCCGATGTTTTAGGTTCCGAATACGTAGCGTTTGATA
TTGCAGCCGAGAAGCTATCCAGGGTGATTCGTAATGACGATGCTCTCAGA
ACGTTGGAAATGGTTCACATGCTGGACGCAGGTTGCGGCACTGGTCTCTG
TGCAGTTCCTTTCAAGAAGGTAGCGGAAGAGTTTCAGCTACCGTTTCGTC
TGACTGGGGTGGACTTCAGCGAAGACATGCTACAGAAAGCCAGCCATAGA
GAAGTGTATGATGAGCTCCACTGTGCAGATATGAACTACCCACTGCCTGT
GGTAGCGGGCACACAGCATTTGTGCATGTCGATTGGAGTGTTTCTGGAGG
GCCATTGCGGTCCCAAAGCGCTAGGCAACATCCTTGCTTGTCTAGCTGCA
GGAGGTTACGCTGTGATCTCCATTCGCCAGAAGCACTTCAGCACTCTCAA
GGATCAGTTCATGGCAGTTATAGACGAGACGGGGTGCACAATTATAGAGC
AGAGTGTTTGTGCGTACCTGGGTCCGGTTGAGGCAGTGTACATGGTGCTG
AGGAAGGCACAGGATAAGGCGGGCCACACTACCGGAGACTTGAGCTGCGA
ACTGTTGAGGGAGTGA
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protein sequence of Ggra6635.t1

>Ggra6635.t1 ID=Ggra6635.t1|Name=Ggra6635.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MSSAPKDQKVSAYRQWSKSYDADVLGSEYVAFDIAAEKLSRVIRNDDALR
TLEMVHMLDAGCGTGLCAVPFKKVAEEFQLPFRLTGVDFSEDMLQKASHR
EVYDELHCADMNYPLPVVAGTQHLCMSIGVFLEGHCGPKALGNILACLAA
GGYAVISIRQKHFSTLKDQFMAVIDETGCTIIEQSVCAYLGPVEAVYMVL
RKAQDKAGHTTGDLSCELLRE*
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mRNA from alignment at tig00000859_pilon:350987..351652-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6635.t1 ID=Ggra6635.t1|Name=Ggra6635.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000859_pilon:350987..351652- (Gracilaria gracilis GNS1m male)
ATGTCGTCCGCTCCCAAGGATCAGAAGGTCAGTGCGTATCGTCAGTGGTC
AAAAAGCTACGATGCCGATGTTTTAGGTTCCGAATACGTAGCGTTTGATA
TTGCAGCCGAGAAGCTATCCAGGGTGATTCGTAATGACGATGCTCTCAGA
ACGTTGGAAATGGTTCACATGCTGGACGCAGGTTGCGGCACTGGTCTCTG
TGCAGTTCCTTTCAAGAAGGTAGCGGAAGAGTTTCAGCTACCGTTTCGTC
TGACTGGGGTGGACTTCAGCGAAGACATGCTACAGAAAGCCAGCCATAGA
GAAGTGTATGATGAGCTCCACTGTGCAGATATGAACTACCCACTGCCTGT
GGTAGCGGGCACACAGCATTTGTGCATGTCGATTGGAGTGTTTCTGGAGG
GCCATTGCGGTCCCAAAGCGCTAGGCAACATCCTTGCTTGTCTAGCTGCA
GGAGGTTACGCTGTGATCTCCATTCGCCAGAAGCACTTCAGCACTCTCAA
GGATCAGTTCATGGCAGTTATAGACGAGACGGGGTGCACAATTATAGAGC
AGAGTGTTTGTGCGTACCTGGGTCCGGTTGAGGCAGTGTACATGGTGCTG
AGGAAGGCACAGGATAAGGCGGGCCACACTACCGGAGACTTGAGCTGCGA
ACTGTTGAGGGAGTGA
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Coding sequence (CDS) from alignment at tig00000859_pilon:350987..351652-

>Ggra6635.t1 ID=Ggra6635.t1|Name=Ggra6635.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000859_pilon:350987..351652- (Gracilaria gracilis GNS1m male)
ATGTCGTCCGCTCCCAAGGATCAGAAGGTCAGTGCGTATCGTCAGTGGTC
AAAAAGCTACGATGCCGATGTTTTAGGTTCCGAATACGTAGCGTTTGATA
TTGCAGCCGAGAAGCTATCCAGGGTGATTCGTAATGACGATGCTCTCAGA
ACGTTGGAAATGGTTCACATGCTGGACGCAGGTTGCGGCACTGGTCTCTG
TGCAGTTCCTTTCAAGAAGGTAGCGGAAGAGTTTCAGCTACCGTTTCGTC
TGACTGGGGTGGACTTCAGCGAAGACATGCTACAGAAAGCCAGCCATAGA
GAAGTGTATGATGAGCTCCACTGTGCAGATATGAACTACCCACTGCCTGT
GGTAGCGGGCACACAGCATTTGTGCATGTCGATTGGAGTGTTTCTGGAGG
GCCATTGCGGTCCCAAAGCGCTAGGCAACATCCTTGCTTGTCTAGCTGCA
GGAGGTTACGCTGTGATCTCCATTCGCCAGAAGCACTTCAGCACTCTCAA
GGATCAGTTCATGGCAGTTATAGACGAGACGGGGTGCACAATTATAGAGC
AGAGTGTTTGTGCGTACCTGGGTCCGGTTGAGGCAGTGTACATGGTGCTG
AGGAAGGCACAGGATAAGGCGGGCCACACTACCGGAGACTTGAGCTGCGA
ACTGTTGAGGGAGTGA
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