Ggra6633.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6633.t1
Unique NameGgra6633.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length245
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000859_piloncontigtig00000859_pilon:338697..339511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog397278.JOJN01000001_gene3060
Max annot lvl201174|Actinobacteria
Evalue4.97e-51
EggNOG OGs2C3PP@1|root,2Z954@2|Bacteria,2IB93@201174|Actinobacteria,4DWUY@85009|Propionibacteriales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6633Ggra6633Gracilaria gracilis GNS1m malegenetig00000859_pilon 338697..339511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6633.t1Ggra6633.t1Gracilaria gracilis GNS1m malepolypeptidetig00000859_pilon 338697..339511 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6633.t1.stop1Ggra6633.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000859_pilon 338697..338699 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6633.t1.CDS1Ggra6633.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000859_pilon 338697..339307 -
Ggra6633.t1.CDS2Ggra6633.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000859_pilon 339388..339511 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6633.t1.exon1Ggra6633.t1.exon1Gracilaria gracilis GNS1m maleexontig00000859_pilon 338697..339307 -
Ggra6633.t1.exon2Ggra6633.t1.exon2Gracilaria gracilis GNS1m maleexontig00000859_pilon 339388..339511 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6633.t1.intron1Ggra6633.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000859_pilon 339308..339387 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6633.t1.start1Ggra6633.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000859_pilon 339509..339511 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6633.t1 ID=Ggra6633.t1|Name=Ggra6633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=245bp
MHSKNERRPLGLWASPRSTSTAFDKMMRQRGDHKVFTEPFSYPFYLGPER
VFSPYGEKRPDATFSAAFDEIMKENKKQPVFVKELPYQMGPLLKDKEAVL
SFKGSLLIRHPAWVVPSFQRVWPEHFNEFMVSYKSLHDIFNIMRDAGEDV
VVMEAHDLRDRPETVVGAWCERMGIETRLDALQWEKGMPDDWQPWSEWFV
TTSQSTGFMPVEPKPYPPLTEEQAKIVDANRPLYYDLEAHKLHV*
back to top

spliced messenger RNA

>Ggra6633.t1 ID=Ggra6633.t1|Name=Ggra6633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=735bp|location=Sequence derived from alignment at tig00000859_pilon:338697..339511- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAGCAAGAATGAAAGACGTCCACTTGGCCTATGGGCCTCGCCGCG
TTCTACGTCCACAGCATTTGACAAGATGATGCGGCAGAGGGGTGATCACA
AAGTTTTCACAGAGCCTTTCAGCTATCCATTTTATCTAGGTCCAGAACGC
GTGTTCAGTCCGTACGGTGAGAAACGCCCTGATGCCACATTCTCAGCTGC
CTTTGATGAAATCATGAAGGAAAACAAGAAACAACCGGTGTTTGTTAAGG
AACTACCGTATCAGATGGGACCACTGCTGAAGGACAAGGAAGCGGTACTT
TCGTTCAAAGGCTCACTGTTGATTCGTCATCCCGCTTGGGTTGTGCCGTC
GTTTCAAAGGGTGTGGCCAGAGCACTTCAATGAATTTATGGTAAGTTACA
AATCGTTGCACGATATCTTCAACATCATGCGCGACGCGGGGGAGGACGTA
GTGGTGATGGAGGCTCATGATCTCAGAGACAGGCCGGAGACGGTTGTCGG
CGCATGGTGTGAACGCATGGGCATAGAAACGCGCTTGGATGCGCTGCAGT
GGGAAAAGGGAATGCCGGACGATTGGCAGCCATGGTCCGAGTGGTTCGTG
ACAACGTCGCAATCGACGGGCTTCATGCCTGTCGAGCCGAAGCCGTACCC
GCCCTTGACGGAGGAGCAAGCGAAGATCGTAGACGCCAATAGGCCGCTTT
ACTACGATCTAGAGGCGCACAAGTTGCATGTGTAG
back to top

protein sequence of Ggra6633.t1

>Ggra6633.t1 ID=Ggra6633.t1|Name=Ggra6633.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=245bp
MHSKNERRPLGLWASPRSTSTAFDKMMRQRGDHKVFTEPFSYPFYLGPER
VFSPYGEKRPDATFSAAFDEIMKENKKQPVFVKELPYQMGPLLKDKEAVL
SFKGSLLIRHPAWVVPSFQRVWPEHFNEFMVSYKSLHDIFNIMRDAGEDV
VVMEAHDLRDRPETVVGAWCERMGIETRLDALQWEKGMPDDWQPWSEWFV
TTSQSTGFMPVEPKPYPPLTEEQAKIVDANRPLYYDLEAHKLHV*
back to top

mRNA from alignment at tig00000859_pilon:338697..339511-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6633.t1 ID=Ggra6633.t1|Name=Ggra6633.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=815bp|location=Sequence derived from alignment at tig00000859_pilon:338697..339511- (Gracilaria gracilis GNS1m male)
ATGCACAGCAAGAATGAAAGACGTCCACTTGGCCTATGGGCCTCGCCGCG
TTCTACGTCCACAGCATTTGACAAGATGATGCGGCAGAGGGGTGATCACA
AAGTTTTCACAGAGCCTTTCAGCTGTACGTCTTTCACTATGCTTCAGAAG
CGATGGAGCAAGAATAATATCTAACTTTGTTGCTCATGTTTTGTTTCCTT
TCAGATCCATTTTATCTAGGTCCAGAACGCGTGTTCAGTCCGTACGGTGA
GAAACGCCCTGATGCCACATTCTCAGCTGCCTTTGATGAAATCATGAAGG
AAAACAAGAAACAACCGGTGTTTGTTAAGGAACTACCGTATCAGATGGGA
CCACTGCTGAAGGACAAGGAAGCGGTACTTTCGTTCAAAGGCTCACTGTT
GATTCGTCATCCCGCTTGGGTTGTGCCGTCGTTTCAAAGGGTGTGGCCAG
AGCACTTCAATGAATTTATGGTAAGTTACAAATCGTTGCACGATATCTTC
AACATCATGCGCGACGCGGGGGAGGACGTAGTGGTGATGGAGGCTCATGA
TCTCAGAGACAGGCCGGAGACGGTTGTCGGCGCATGGTGTGAACGCATGG
GCATAGAAACGCGCTTGGATGCGCTGCAGTGGGAAAAGGGAATGCCGGAC
GATTGGCAGCCATGGTCCGAGTGGTTCGTGACAACGTCGCAATCGACGGG
CTTCATGCCTGTCGAGCCGAAGCCGTACCCGCCCTTGACGGAGGAGCAAG
CGAAGATCGTAGACGCCAATAGGCCGCTTTACTACGATCTAGAGGCGCAC
AAGTTGCATGTGTAG
back to top

Coding sequence (CDS) from alignment at tig00000859_pilon:338697..339511-

>Ggra6633.t1 ID=Ggra6633.t1|Name=Ggra6633.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=735bp|location=Sequence derived from alignment at tig00000859_pilon:338697..339511- (Gracilaria gracilis GNS1m male)
ATGCACAGCAAGAATGAAAGACGTCCACTTGGCCTATGGGCCTCGCCGCG
TTCTACGTCCACAGCATTTGACAAGATGATGCGGCAGAGGGGTGATCACA
AAGTTTTCACAGAGCCTTTCAGCTATCCATTTTATCTAGGTCCAGAACGC
GTGTTCAGTCCGTACGGTGAGAAACGCCCTGATGCCACATTCTCAGCTGC
CTTTGATGAAATCATGAAGGAAAACAAGAAACAACCGGTGTTTGTTAAGG
AACTACCGTATCAGATGGGACCACTGCTGAAGGACAAGGAAGCGGTACTT
TCGTTCAAAGGCTCACTGTTGATTCGTCATCCCGCTTGGGTTGTGCCGTC
GTTTCAAAGGGTGTGGCCAGAGCACTTCAATGAATTTATGGTAAGTTACA
AATCGTTGCACGATATCTTCAACATCATGCGCGACGCGGGGGAGGACGTA
GTGGTGATGGAGGCTCATGATCTCAGAGACAGGCCGGAGACGGTTGTCGG
CGCATGGTGTGAACGCATGGGCATAGAAACGCGCTTGGATGCGCTGCAGT
GGGAAAAGGGAATGCCGGACGATTGGCAGCCATGGTCCGAGTGGTTCGTG
ACAACGTCGCAATCGACGGGCTTCATGCCTGTCGAGCCGAAGCCGTACCC
GCCCTTGACGGAGGAGCAAGCGAAGATCGTAGACGCCAATAGGCCGCTTT
ACTACGATCTAGAGGCGCACAAGTTGCATGTGTAG
back to top