Ggra6620.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6620.t1
Unique NameGgra6620.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:654181..654774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6620Ggra6620Gracilaria gracilis GNS1m malegenetig00000081_pilon 654181..654774 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6620.t1.stop1Ggra6620.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 654181..654183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6620.t1.CDS1Ggra6620.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 654181..654774 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6620.t1.exon1Ggra6620.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 654181..654774 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6620.t1.start1Ggra6620.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 654772..654774 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6620.t1Ggra6620.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 654181..654774 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6620.t1 ID=Ggra6620.t1|Name=Ggra6620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=198bp
MILILTILAALGGMMVAAEPLRVDAEALSQSVRSAQYLPCPNSCLPAWIA
FHGCLSRLDHCILKGCDAAGSYGPGPFATCTDEQAVPTPPPSPAPTGCVT
STTDHAPGQFGLRCTCPNLGVTFISIANPADVLSCMRSCYEGSGDFLEAC
HEYKRRNVNGDLSEIRPVFLDVGKVCCENYCGGSYSASIGKPTCSRA*
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spliced messenger RNA

>Ggra6620.t1 ID=Ggra6620.t1|Name=Ggra6620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000081_pilon:654181..654774- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCTCATTCTCACTATCTTGGCAGCGCTTGGAGGAATGATGGTTGC
AGCTGAACCGCTGCGCGTTGACGCAGAGGCACTATCTCAGTCGGTTCGCT
CTGCTCAGTATCTGCCGTGTCCAAACAGCTGTCTGCCCGCGTGGATTGCG
TTCCATGGGTGCTTATCGAGACTGGACCACTGCATTCTGAAAGGGTGCGA
TGCGGCGGGGTCGTACGGCCCTGGACCGTTCGCAACGTGCACGGATGAGC
AGGCAGTTCCCACACCGCCTCCGTCGCCAGCACCCACGGGGTGCGTCACC
AGCACTACGGATCATGCGCCAGGACAGTTTGGTCTGCGATGCACGTGCCC
GAATCTGGGAGTGACGTTCATCTCGATTGCGAACCCGGCCGATGTGCTGT
CGTGCATGAGGTCGTGTTACGAAGGAAGTGGCGATTTCTTGGAGGCGTGT
CATGAGTATAAGCGAAGGAATGTGAACGGTGACCTTTCGGAGATCCGACC
TGTGTTCTTGGATGTGGGCAAAGTGTGCTGCGAGAATTACTGTGGCGGTT
CTTATTCGGCGAGCATTGGAAAGCCGACGTGCTCACGGGCCTAA
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protein sequence of Ggra6620.t1

>Ggra6620.t1 ID=Ggra6620.t1|Name=Ggra6620.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MILILTILAALGGMMVAAEPLRVDAEALSQSVRSAQYLPCPNSCLPAWIA
FHGCLSRLDHCILKGCDAAGSYGPGPFATCTDEQAVPTPPPSPAPTGCVT
STTDHAPGQFGLRCTCPNLGVTFISIANPADVLSCMRSCYEGSGDFLEAC
HEYKRRNVNGDLSEIRPVFLDVGKVCCENYCGGSYSASIGKPTCSRA*
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mRNA from alignment at tig00000081_pilon:654181..654774-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6620.t1 ID=Ggra6620.t1|Name=Ggra6620.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000081_pilon:654181..654774- (Gracilaria gracilis GNS1m male)
ATGATTCTCATTCTCACTATCTTGGCAGCGCTTGGAGGAATGATGGTTGC
AGCTGAACCGCTGCGCGTTGACGCAGAGGCACTATCTCAGTCGGTTCGCT
CTGCTCAGTATCTGCCGTGTCCAAACAGCTGTCTGCCCGCGTGGATTGCG
TTCCATGGGTGCTTATCGAGACTGGACCACTGCATTCTGAAAGGGTGCGA
TGCGGCGGGGTCGTACGGCCCTGGACCGTTCGCAACGTGCACGGATGAGC
AGGCAGTTCCCACACCGCCTCCGTCGCCAGCACCCACGGGGTGCGTCACC
AGCACTACGGATCATGCGCCAGGACAGTTTGGTCTGCGATGCACGTGCCC
GAATCTGGGAGTGACGTTCATCTCGATTGCGAACCCGGCCGATGTGCTGT
CGTGCATGAGGTCGTGTTACGAAGGAAGTGGCGATTTCTTGGAGGCGTGT
CATGAGTATAAGCGAAGGAATGTGAACGGTGACCTTTCGGAGATCCGACC
TGTGTTCTTGGATGTGGGCAAAGTGTGCTGCGAGAATTACTGTGGCGGTT
CTTATTCGGCGAGCATTGGAAAGCCGACGTGCTCACGGGCCTAA
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Coding sequence (CDS) from alignment at tig00000081_pilon:654181..654774-

>Ggra6620.t1 ID=Ggra6620.t1|Name=Ggra6620.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00000081_pilon:654181..654774- (Gracilaria gracilis GNS1m male)
ATGATTCTCATTCTCACTATCTTGGCAGCGCTTGGAGGAATGATGGTTGC
AGCTGAACCGCTGCGCGTTGACGCAGAGGCACTATCTCAGTCGGTTCGCT
CTGCTCAGTATCTGCCGTGTCCAAACAGCTGTCTGCCCGCGTGGATTGCG
TTCCATGGGTGCTTATCGAGACTGGACCACTGCATTCTGAAAGGGTGCGA
TGCGGCGGGGTCGTACGGCCCTGGACCGTTCGCAACGTGCACGGATGAGC
AGGCAGTTCCCACACCGCCTCCGTCGCCAGCACCCACGGGGTGCGTCACC
AGCACTACGGATCATGCGCCAGGACAGTTTGGTCTGCGATGCACGTGCCC
GAATCTGGGAGTGACGTTCATCTCGATTGCGAACCCGGCCGATGTGCTGT
CGTGCATGAGGTCGTGTTACGAAGGAAGTGGCGATTTCTTGGAGGCGTGT
CATGAGTATAAGCGAAGGAATGTGAACGGTGACCTTTCGGAGATCCGACC
TGTGTTCTTGGATGTGGGCAAAGTGTGCTGCGAGAATTACTGTGGCGGTT
CTTATTCGGCGAGCATTGGAAAGCCGACGTGCTCACGGGCCTAA
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