Ggra6619.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6619.t1
Unique NameGgra6619.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length295
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000081_piloncontigtig00000081_pilon:651834..652718 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog926554.KI912654_gene4469
PFAMsKelch_1,Malectin,NPCBM
Max annot lvl1297|Deinococcus-Thermus
Evalue4.55e-44
EggNOG OGsCOG2133@1|root,COG3055@1|root,COG2133@2|Bacteria,COG3055@2|Bacteria,1WM1P@1297|Deinococcus-Thermus
DescriptionKelch
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6619Ggra6619Gracilaria gracilis GNS1m malegenetig00000081_pilon 651834..653384 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6619.t1.stop1Ggra6619.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000081_pilon 651834..651836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6619.t1.CDS1Ggra6619.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000081_pilon 651834..652718 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6619.t1.exon1Ggra6619.t1.exon1Gracilaria gracilis GNS1m maleexontig00000081_pilon 651834..652718 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6619.t1.start1Ggra6619.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000081_pilon 652716..652718 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6619.t1Ggra6619.t1Gracilaria gracilis GNS1m malepolypeptidetig00000081_pilon 651834..652718 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6619.t1 ID=Ggra6619.t1|Name=Ggra6619.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=295bp
MLRTDDGRKLLLVAGGYIDNSELLTTKKAYVLDVREPRGEWQRVADMPRH
LTHCAQAFVGDKMYVCGGFLAKAPGRSVGHCYVFSYGANEWRALPKLPLA
VGGGGLVYLKRAHALLFSAGMIRKQDEWDGEDSVHTYMLRLDAPLAGWQR
KADIPVARNHMSAVSVQGRHFFVGGQRRADEESGNSALVHEYDAATDSWA
ERAPLPLPLGHIAASTTRWRGGALVVAGVTNGRAPVDAVLHYDVAADRWT
QVGKYARAVQSAVCGVARDALFCATGRGHPGTAADAEWRALRRV*
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spliced messenger RNA

>Ggra6619.t1 ID=Ggra6619.t1|Name=Ggra6619.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000081_pilon:651834..652718- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGCACGGACGACGGGCGCAAGCTGCTGCTGGTGGCGGGCGGCTA
CATCGACAACAGCGAGCTACTGACAACCAAAAAGGCGTACGTGCTGGACG
TGCGCGAGCCGCGCGGCGAGTGGCAGCGCGTGGCGGACATGCCGCGCCAC
TTGACGCACTGCGCGCAGGCCTTCGTGGGCGACAAGATGTACGTGTGCGG
CGGCTTTCTGGCAAAGGCGCCCGGACGCAGCGTCGGGCATTGCTACGTGT
TCTCGTACGGCGCCAACGAGTGGCGGGCGCTGCCCAAGCTGCCGCTGGCG
GTGGGCGGCGGCGGGCTGGTGTACCTGAAGCGCGCACACGCGCTGCTGTT
CTCCGCCGGCATGATCCGCAAACAGGACGAGTGGGACGGCGAAGACTCCG
TGCACACGTACATGCTACGGCTGGACGCGCCGCTCGCCGGCTGGCAGCGC
AAGGCGGACATCCCCGTAGCGCGCAACCACATGTCGGCCGTAAGCGTACA
GGGCCGCCACTTTTTCGTGGGTGGGCAGCGGCGCGCCGACGAGGAGTCCG
GCAACTCGGCGCTGGTGCACGAGTACGACGCAGCGACGGACAGCTGGGCG
GAGCGCGCGCCGCTGCCGCTGCCGCTGGGGCACATTGCGGCGTCCACGAC
GCGCTGGCGCGGCGGCGCGCTGGTGGTGGCCGGCGTCACCAACGGGCGCG
CGCCCGTGGACGCCGTGCTGCACTACGACGTAGCCGCCGACCGCTGGACG
CAAGTGGGCAAGTACGCGCGCGCCGTGCAGAGCGCCGTGTGCGGCGTGGC
GCGCGACGCGCTGTTCTGCGCCACGGGGCGCGGTCACCCCGGCACGGCGG
CCGACGCCGAGTGGCGCGCGCTGCGCCGCGTGTGA
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protein sequence of Ggra6619.t1

>Ggra6619.t1 ID=Ggra6619.t1|Name=Ggra6619.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=295bp
MLRTDDGRKLLLVAGGYIDNSELLTTKKAYVLDVREPRGEWQRVADMPRH
LTHCAQAFVGDKMYVCGGFLAKAPGRSVGHCYVFSYGANEWRALPKLPLA
VGGGGLVYLKRAHALLFSAGMIRKQDEWDGEDSVHTYMLRLDAPLAGWQR
KADIPVARNHMSAVSVQGRHFFVGGQRRADEESGNSALVHEYDAATDSWA
ERAPLPLPLGHIAASTTRWRGGALVVAGVTNGRAPVDAVLHYDVAADRWT
QVGKYARAVQSAVCGVARDALFCATGRGHPGTAADAEWRALRRV*
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mRNA from alignment at tig00000081_pilon:651834..652718-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6619.t1 ID=Ggra6619.t1|Name=Ggra6619.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=885bp|location=Sequence derived from alignment at tig00000081_pilon:651834..652718- (Gracilaria gracilis GNS1m male)
ATGCTGCGCACGGACGACGGGCGCAAGCTGCTGCTGGTGGCGGGCGGCTA
CATCGACAACAGCGAGCTACTGACAACCAAAAAGGCGTACGTGCTGGACG
TGCGCGAGCCGCGCGGCGAGTGGCAGCGCGTGGCGGACATGCCGCGCCAC
TTGACGCACTGCGCGCAGGCCTTCGTGGGCGACAAGATGTACGTGTGCGG
CGGCTTTCTGGCAAAGGCGCCCGGACGCAGCGTCGGGCATTGCTACGTGT
TCTCGTACGGCGCCAACGAGTGGCGGGCGCTGCCCAAGCTGCCGCTGGCG
GTGGGCGGCGGCGGGCTGGTGTACCTGAAGCGCGCACACGCGCTGCTGTT
CTCCGCCGGCATGATCCGCAAACAGGACGAGTGGGACGGCGAAGACTCCG
TGCACACGTACATGCTACGGCTGGACGCGCCGCTCGCCGGCTGGCAGCGC
AAGGCGGACATCCCCGTAGCGCGCAACCACATGTCGGCCGTAAGCGTACA
GGGCCGCCACTTTTTCGTGGGTGGGCAGCGGCGCGCCGACGAGGAGTCCG
GCAACTCGGCGCTGGTGCACGAGTACGACGCAGCGACGGACAGCTGGGCG
GAGCGCGCGCCGCTGCCGCTGCCGCTGGGGCACATTGCGGCGTCCACGAC
GCGCTGGCGCGGCGGCGCGCTGGTGGTGGCCGGCGTCACCAACGGGCGCG
CGCCCGTGGACGCCGTGCTGCACTACGACGTAGCCGCCGACCGCTGGACG
CAAGTGGGCAAGTACGCGCGCGCCGTGCAGAGCGCCGTGTGCGGCGTGGC
GCGCGACGCGCTGTTCTGCGCCACGGGGCGCGGTCACCCCGGCACGGCGG
CCGACGCCGAGTGGCGCGCGCTGCGCCGCGTGTGA
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Coding sequence (CDS) from alignment at tig00000081_pilon:651834..652718-

>Ggra6619.t1 ID=Ggra6619.t1|Name=Ggra6619.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=885bp|location=Sequence derived from alignment at tig00000081_pilon:651834..652718- (Gracilaria gracilis GNS1m male)
ATGCTGCGCACGGACGACGGGCGCAAGCTGCTGCTGGTGGCGGGCGGCTA
CATCGACAACAGCGAGCTACTGACAACCAAAAAGGCGTACGTGCTGGACG
TGCGCGAGCCGCGCGGCGAGTGGCAGCGCGTGGCGGACATGCCGCGCCAC
TTGACGCACTGCGCGCAGGCCTTCGTGGGCGACAAGATGTACGTGTGCGG
CGGCTTTCTGGCAAAGGCGCCCGGACGCAGCGTCGGGCATTGCTACGTGT
TCTCGTACGGCGCCAACGAGTGGCGGGCGCTGCCCAAGCTGCCGCTGGCG
GTGGGCGGCGGCGGGCTGGTGTACCTGAAGCGCGCACACGCGCTGCTGTT
CTCCGCCGGCATGATCCGCAAACAGGACGAGTGGGACGGCGAAGACTCCG
TGCACACGTACATGCTACGGCTGGACGCGCCGCTCGCCGGCTGGCAGCGC
AAGGCGGACATCCCCGTAGCGCGCAACCACATGTCGGCCGTAAGCGTACA
GGGCCGCCACTTTTTCGTGGGTGGGCAGCGGCGCGCCGACGAGGAGTCCG
GCAACTCGGCGCTGGTGCACGAGTACGACGCAGCGACGGACAGCTGGGCG
GAGCGCGCGCCGCTGCCGCTGCCGCTGGGGCACATTGCGGCGTCCACGAC
GCGCTGGCGCGGCGGCGCGCTGGTGGTGGCCGGCGTCACCAACGGGCGCG
CGCCCGTGGACGCCGTGCTGCACTACGACGTAGCCGCCGACCGCTGGACG
CAAGTGGGCAAGTACGCGCGCGCCGTGCAGAGCGCCGTGTGCGGCGTGGC
GCGCGACGCGCTGTTCTGCGCCACGGGGCGCGGTCACCCCGGCACGGCGG
CCGACGCCGAGTGGCGCGCGCTGCGCCGCGTGTGA
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